© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|990 |
| Gene name | |
| Location | Contig_1204:690..2420 |
| Strand | + |
| Gene length (bp) | 1730 |
| Transcript length (bp) | 1212 |
| Coding sequence length (bp) | 1212 |
| Protein length (aa) | 404 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05383 | La | La domain | 6.4E-20 | 99 | 156 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.8E-09 | 204 | 262 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87058|LAH1_SCHPO | La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sla1 PE=1 SV=1 | 86 | 296 | 1.0E-35 |
| sp|P33399|LHP1_YEAST | La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LHP1 PE=1 SV=2 | 101 | 296 | 2.0E-23 |
| sp|P10881|LA_BOVIN | Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2 | 99 | 372 | 4.0E-19 |
| sp|P05455|LA_HUMAN | Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2 | 99 | 284 | 1.0E-18 |
| sp|P32067|LA_MOUSE | Lupus La protein homolog OS=Mus musculus GN=Ssb PE=1 SV=1 | 99 | 297 | 2.0E-17 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87058|LAH1_SCHPO | La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sla1 PE=1 SV=1 | 86 | 296 | 1.0E-35 |
| sp|P33399|LHP1_YEAST | La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LHP1 PE=1 SV=2 | 101 | 296 | 2.0E-23 |
| sp|P10881|LA_BOVIN | Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2 | 99 | 372 | 4.0E-19 |
| sp|P05455|LA_HUMAN | Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2 | 99 | 284 | 1.0E-18 |
| sp|P32067|LA_MOUSE | Lupus La protein homolog OS=Mus musculus GN=Ssb PE=1 SV=1 | 99 | 297 | 2.0E-17 |
| sp|P38656|LA_RAT | Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=1 SV=1 | 99 | 284 | 2.0E-17 |
| sp|P28049|LAB_XENLA | Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1 | 90 | 276 | 5.0E-17 |
| sp|P40796|LA_DROME | La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2 | 98 | 276 | 5.0E-16 |
| sp|P28048|LAA_XENLA | Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1 | 94 | 276 | 8.0E-16 |
| sp|Q26457|LA_AEDAL | La protein homolog OS=Aedes albopictus PE=1 SV=1 | 101 | 262 | 3.0E-14 |
| sp|Q7ZWE3|LARP7_DANRE | La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1 | 81 | 250 | 7.0E-11 |
| sp|Q93ZV7|LA1_ARATH | La protein 1 OS=Arabidopsis thaliana GN=LA1 PE=1 SV=1 | 99 | 274 | 5.0E-10 |
| sp|Q28G87|LARP7_XENTR | La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1 | 99 | 250 | 5.0E-10 |
| sp|Q4R627|LARP7_MACFA | La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1 | 89 | 250 | 1.0E-08 |
| sp|Q4G0J3|LARP7_HUMAN | La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1 | 89 | 250 | 2.0E-08 |
| sp|Q05CL8|LARP7_MOUSE | La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2 | 89 | 250 | 2.0E-08 |
| sp|Q5XI01|LARP7_RAT | La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2 | 89 | 250 | 3.0E-08 |
| sp|Q94A38|LRP6A_ARATH | La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1 | 75 | 223 | 2.0E-07 |
| sp|Q0V7U7|LA2_ARATH | La protein 2 OS=Arabidopsis thaliana GN=LA2 PE=1 SV=1 | 102 | 287 | 8.0E-07 |
| sp|Q6FKG4|PABP_CANGA | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1 | 185 | 280 | 4.0E-06 |
| sp|Q7S6N6|PABP_NEUCR | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pabp-1 PE=3 SV=1 | 185 | 277 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.5588 | 0.6228 | 0.3718 | 0.0639 | 0.1098 | 0.0509 | 0.1535 | 0.0272 | 0.0476 | 0.0029 |
| Orthofinder run ID | 4 |
| Orthogroup | 5802 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|990 MSVVTKPAVEDETTQPAQNKPELIGGQPELMMEDVKPAGVKAEPTEDEPKLAEEQPKTGENSEDTKMLKTKASID RDNFRNNRKFDPSVREVTDDPVAIRKQVEFYFGDWNFPQDKFMWESCEGTANKPVPISKIHSFKRMRTFQPYSAI VAALRDSKFVEVVGEKGQELVKRRVAYKPMAGGRVKVEASTVYVKGFGDENPDTQFDLESFFAKFGEIKGLKLRR TNEGLFKGSVFVTFPNEEAAKKFVEQDPAPTYKGHELKIMSKRKYCDEKSELIRQGKLEPNNSSQKKFFEGRDPN KKGDATTAKGPAFKTGAAAAGAVAAGAVAAGTETVPARTAVAETIPTMQGLASNVLLWKAKMNPPHPTASEAVKT RGRPLLALLLAPCVRQWLVDSDVSEPVE* |
| Coding | >Hirsu2|990 ATGTCCGTTGTGACGAAGCCAGCCGTCGAAGATGAGACGACTCAGCCTGCTCAGAACAAGCCCGAACTTATAGGC GGGCAGCCGGAGCTCATGATGGAGGATGTGAAACCTGCGGGGGTCAAGGCCGAGCCTACGGAAGACGAGCCCAAA CTGGCAGAGGAACAGCCCAAGACAGGCGAGAACTCGGAGGATACGAAGATGCTCAAGACAAAGGCATCAATTGAC CGCGACAATTTCCGCAACAACCGCAAGTTCGACCCCAGCGTTCGCGAGGTCACCGACGACCCAGTTGCCATTCGG AAACAGGTCGAGTTCTACTTTGGAGACTGGAACTTCCCTCAGGATAAATTCATGTGGGAATCCTGCGAGGGTACA GCGAACAAGCCCGTGCCCATATCCAAGATTCATTCCTTTAAACGCATGCGCACCTTCCAGCCTTACAGTGCCATA GTTGCTGCCTTGCGTGACAGCAAATTTGTCGAAGTGGTAGGCGAAAAGGGCCAGGAATTGGTCAAACGCAGGGTC GCCTACAAGCCCATGGCCGGAGGACGGGTCAAGGTCGAGGCCTCTACCGTCTATGTCAAGGGTTTTGGGGACGAG AACCCGGATACCCAGTTCGACCTCGAAAGCTTTTTCGCAAAGTTCGGTGAGATCAAGGGTCTCAAGCTTCGTCGG ACGAACGAGGGTCTCTTCAAGGGTTCTGTTTTTGTCACCTTCCCGAACGAAGAGGCTGCGAAAAAATTTGTCGAA CAGGATCCGGCGCCAACTTACAAAGGCCATGAGCTGAAAATTATGTCGAAGCGAAAGTATTGCGACGAGAAGAGT GAGCTTATCCGCCAGGGAAAGCTGGAGCCCAACAATTCCTCGCAGAAAAAGTTCTTCGAGGGCAGGGATCCGAAC AAGAAGGGAGACGCGACCACGGCCAAAGGACCGGCTTTCAAGACCGGCGCGGCGGCGGCCGGGGCCGTGGCGGCC GGGGCCGTGGCGGCCGGGACCGAGACGGTCCCCGCGAGAACGGCAGTTGCCGAGACGATACCAACGATGCAAGGC CTCGCATCCAATGTACTGCTGTGGAAAGCAAAGATGAATCCGCCCCATCCAACGGCAAGCGAGGCCGTGAAGACG AGGGGGCGCCCTCTCCTTGCACTACTTCTGGCACCGTGCGTTCGACAGTGGCTGGTCGACTCGGACGTGTCCGAG CCCGTGGAGTAA |
| Transcript | >Hirsu2|990 ATGTCCGTTGTGACGAAGCCAGCCGTCGAAGATGAGACGACTCAGCCTGCTCAGAACAAGCCCGAACTTATAGGC GGGCAGCCGGAGCTCATGATGGAGGATGTGAAACCTGCGGGGGTCAAGGCCGAGCCTACGGAAGACGAGCCCAAA CTGGCAGAGGAACAGCCCAAGACAGGCGAGAACTCGGAGGATACGAAGATGCTCAAGACAAAGGCATCAATTGAC CGCGACAATTTCCGCAACAACCGCAAGTTCGACCCCAGCGTTCGCGAGGTCACCGACGACCCAGTTGCCATTCGG AAACAGGTCGAGTTCTACTTTGGAGACTGGAACTTCCCTCAGGATAAATTCATGTGGGAATCCTGCGAGGGTACA GCGAACAAGCCCGTGCCCATATCCAAGATTCATTCCTTTAAACGCATGCGCACCTTCCAGCCTTACAGTGCCATA GTTGCTGCCTTGCGTGACAGCAAATTTGTCGAAGTGGTAGGCGAAAAGGGCCAGGAATTGGTCAAACGCAGGGTC GCCTACAAGCCCATGGCCGGAGGACGGGTCAAGGTCGAGGCCTCTACCGTCTATGTCAAGGGTTTTGGGGACGAG AACCCGGATACCCAGTTCGACCTCGAAAGCTTTTTCGCAAAGTTCGGTGAGATCAAGGGTCTCAAGCTTCGTCGG ACGAACGAGGGTCTCTTCAAGGGTTCTGTTTTTGTCACCTTCCCGAACGAAGAGGCTGCGAAAAAATTTGTCGAA CAGGATCCGGCGCCAACTTACAAAGGCCATGAGCTGAAAATTATGTCGAAGCGAAAGTATTGCGACGAGAAGAGT GAGCTTATCCGCCAGGGAAAGCTGGAGCCCAACAATTCCTCGCAGAAAAAGTTCTTCGAGGGCAGGGATCCGAAC AAGAAGGGAGACGCGACCACGGCCAAAGGACCGGCTTTCAAGACCGGCGCGGCGGCGGCCGGGGCCGTGGCGGCC GGGGCCGTGGCGGCCGGGACCGAGACGGTCCCCGCGAGAACGGCAGTTGCCGAGACGATACCAACGATGCAAGGC CTCGCATCCAATGTACTGCTGTGGAAAGCAAAGATGAATCCGCCCCATCCAACGGCAAGCGAGGCCGTGAAGACG AGGGGGCGCCCTCTCCTTGCACTACTTCTGGCACCGTGCGTTCGACAGTGGCTGGTCGACTCGGACGTGTCCGAG CCCGTGGAGTAA |
| Gene | >Hirsu2|990 ATGTCCGTTGTGACGAAGCCAGCCGTCGAAGATGAGACGACTCAGCCTGCTCAGAACAAGCCCGAACTTATAGGC GGGCAGCCGGAGCTCATGATGGAGGATGTGAAACCTGCGGGGGTCAAGGCCGAGCCTACGGAAGACGAGCCCAAA CTGGCAGAGGAACAGCCCAAGACAGGCGAGAACTCGGAGGATACGAAGATGCTCAAGACAAAGGCATCAATTGAC CGCGACAATTTCCGCAACAACCGCAAGTTCGACCCCAGCGTTCGCGAGGTCACCGACGACCCAGTTGCCATTCGG AAACAGGTAGTACCTCGTCGTCCAGCAGTCCACAGTTCTCTCACGGCGTCTGACGGCTTTTGTCGCACTAGGTCG AGTTCTACTTTGGAGACTGGAACTTCCCTCAGGATAAATTCATGTGGGAATCCTGCGAGGGTACAGCGAACAAGC CCGTGCCCATATCCAAGATTCATTCCTTTAAACGCATGCGCACCTTCCAGCCTTACAGTGCCATAGTTGCTGCCT TGCGTGACAGCAAATTTGTCGAAGTGGTAGGCGAAAAGGGCCAGGAATTGGTCAAACGCAGGGTCGCCTACAAGC CCATGGCCGGAGGACGGGTCAAGGTCGAGGCCTCTACCGTCTATGTCAAGGGTTTTGGGGACGAGAACCCGGATA CCCAGTTCGACCTCGAAAGCTTTTTCGCAAAGTTCGGTGAGATCAAGGGTCTCAAGCTTCGTCGGACGAACGAGG GTCTCTTCAAGGGTTCTGTTTTTGTCACCTTCCCGAACGAAGAGGCTGCGAAAAAATTTGTCGAACAGGATCCGG CGCCAACTTACAAAGGCCATGAGCTGAAAATTATGTCGAAGCGAAAGTATTGCGACGAGAAGAGTGAGCTTATCC GCCAGGGAAAGCTGGAGCCCAACAATTCCTCGCAGAAAAAGTTCTTCGAGGGCAGGGATCCGAACAAGAAGGGGT ATCGAGACAGAAATGCCCGAGGTGGGCGCGATGCTGACGACTGGAAGAAGAGACGCGACCACGGCCAAAGGACCG GCTTTCAAGACCGGCGCGGCGGCGGCCGGGGCCGTGGCGGCCGGGGCCGTGGCGGCCGGGACCGAGACGGTCCCC GCGAGAACGGCAGTTGCCGAGACGATACCAACGAGTTAGTTGGCACCGCTTCGGTTCGTCATGAACCTTTAAGTG ACACTTCCTCTAGTGCAAGGCCTCGCATCCAATGTACTGCTGTGGAAAGCAAAGATGAATCCGCCCCATCCAACG GCAAGCGAGGCCGTGAAGACGAGGGGGCGTCAGAGGAGGCGCCAGCCGCTAAGAAGGTTGATACCAAGGAGGAGG TCAAGGCTGAGGCAGCGTAGTGGTGGACTCACGGAGCCATGTCGCACGTTGGTAACTTGACCCCCCGTGCAAGGG GAGATGAATTTGACGAGGACCGCAGATTTCATGTTCTTTTTCACACTTCGATGTGGAGACCTCTCGTTTCCCCGC TCTTTCCCTGCGACAGGCTGCGCGACGGCCTCAGGAAAGGCATGAGAGAGATGGTCTCTGATGTCCGAGTCTCGC TGGCATGTAGGCCCTCTCCTTGCACTACTTCTGGCAGTGAGTAAAGTTATTGCTAGCTTCCGTTATGAAATAGAG TGCCAACGAGCGCCGACGGAGTGTAGCCGTGCGTTCGACAGTGGCTGGTCGACTCGGACGTGTCCGAGCCCGTGG AGTAA |