Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|9898
Gene name
LocationContig_755:9670..10551
Strand+
Gene length (bp)881
Transcript length (bp)582
Coding sequence length (bp)582
Protein length (aa) 194

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08292 RNA_pol_Rbc25 RNA polymerase III subunit Rpc25 7.4E-33 79 190
PF03876 SHS2_Rpb7-N SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 1.4E-13 9 77

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O94285|RPC8_SCHPO DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc25 PE=1 SV=1 1 190 1.0E-47
sp|P35718|RPC8_YEAST DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC25 PE=1 SV=1 1 191 3.0E-45
sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens GN=POLR3H PE=1 SV=1 1 190 3.0E-42
sp|Q2T9X1|RPC8_BOVIN DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus GN=POLR3H PE=2 SV=1 1 190 7.0E-40
sp|Q9D2C6|RPC8_MOUSE DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus GN=Polr3h PE=1 SV=2 1 190 9.0E-40
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O94285|RPC8_SCHPO DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc25 PE=1 SV=1 1 190 1.0E-47
sp|P35718|RPC8_YEAST DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC25 PE=1 SV=1 1 191 3.0E-45
sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens GN=POLR3H PE=1 SV=1 1 190 3.0E-42
sp|Q2T9X1|RPC8_BOVIN DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus GN=POLR3H PE=2 SV=1 1 190 7.0E-40
sp|Q9D2C6|RPC8_MOUSE DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus GN=Polr3h PE=1 SV=2 1 190 9.0E-40
sp|Q557J3|RPC8_DICDI DNA-directed RNA polymerase III subunit rpc8 OS=Dictyostelium discoideum GN=polr3h-1 PE=2 SV=1 1 190 3.0E-31
[Show less]

GO

GO Term Description Terminal node
GO:0006351 transcription, DNA-templated Yes
GO:0003899 DNA-directed 5'-3' RNA polymerase activity Yes
GO:0008152 metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0044237 cellular metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0034062 5'-3' RNA polymerase activity No
GO:0016070 RNA metabolic process No
GO:0032774 RNA biosynthetic process No
GO:0071704 organic substance metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0044238 primary metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0008150 biological_process No
GO:0044260 cellular macromolecule metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0097747 RNA polymerase activity No
GO:0016740 transferase activity No
GO:0003674 molecular_function No
GO:0016772 transferase activity, transferring phosphorus-containing groups No
GO:0044249 cellular biosynthetic process No
GO:0140098 catalytic activity, acting on RNA No
GO:0009987 cellular process No
GO:0018130 heterocycle biosynthetic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0034645 cellular macromolecule biosynthetic process No
GO:0009059 macromolecule biosynthetic process No
GO:0016779 nucleotidyltransferase activity No
GO:0003824 catalytic activity No
GO:0019438 aromatic compound biosynthetic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0090304 nucleic acid metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0009058 biosynthetic process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:1901576 organic substance biosynthetic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 14 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|9898
MFILTKISDLVQIEPNDFSKHSIVAIEDNINAKYSNKVIQKIGLCICLYDLLWSSEGLIGHKTGLVNVNVEFRMV
VFRPFKGEVMLGRIRSSTPAGINLRTDFFDDIFIPFDQLPEGSEYSHSEQLWIWTMDEVRLFYDANEMVRFQVIE
EEWHDQTPAGPSQGEDVPAKTPYKIKGSMAGDGLGVCLWWDDM*
Coding >Hirsu2|9898
ATGTTTATTCTTACGAAAATCTCCGATCTGGTGCAGATCGAGCCCAACGACTTCTCCAAGCACAGCATCGTCGCC
ATCGAGGACAACATCAACGCCAAGTACTCCAACAAGGTCATCCAGAAAATCGGCCTGTGCATATGCCTGTACGAC
CTTCTCTGGTCCTCGGAGGGCCTCATCGGCCATAAGACCGGTCTCGTCAACGTCAACGTCGAGTTTCGCATGGTC
GTCTTCCGGCCCTTCAAGGGAGAGGTGATGCTGGGCCGAATACGCAGTTCCACCCCGGCCGGCATCAACCTGAGA
ACCGACTTCTTCGACGACATCTTCATCCCGTTCGACCAGCTGCCCGAAGGCTCCGAATATAGCCACAGCGAGCAA
CTCTGGATCTGGACCATGGACGAGGTGCGGCTATTCTACGACGCCAACGAGATGGTCCGCTTCCAGGTCATCGAG
GAGGAGTGGCACGACCAGACACCGGCGGGGCCATCGCAAGGGGAAGACGTGCCGGCCAAGACGCCGTACAAGATC
AAGGGAAGCATGGCCGGCGACGGGCTCGGGGTGTGCCTCTGGTGGGACGACATGTGA
Transcript >Hirsu2|9898
ATGTTTATTCTTACGAAAATCTCCGATCTGGTGCAGATCGAGCCCAACGACTTCTCCAAGCACAGCATCGTCGCC
ATCGAGGACAACATCAACGCCAAGTACTCCAACAAGGTCATCCAGAAAATCGGCCTGTGCATATGCCTGTACGAC
CTTCTCTGGTCCTCGGAGGGCCTCATCGGCCATAAGACCGGTCTCGTCAACGTCAACGTCGAGTTTCGCATGGTC
GTCTTCCGGCCCTTCAAGGGAGAGGTGATGCTGGGCCGAATACGCAGTTCCACCCCGGCCGGCATCAACCTGAGA
ACCGACTTCTTCGACGACATCTTCATCCCGTTCGACCAGCTGCCCGAAGGCTCCGAATATAGCCACAGCGAGCAA
CTCTGGATCTGGACCATGGACGAGGTGCGGCTATTCTACGACGCCAACGAGATGGTCCGCTTCCAGGTCATCGAG
GAGGAGTGGCACGACCAGACACCGGCGGGGCCATCGCAAGGGGAAGACGTGCCGGCCAAGACGCCGTACAAGATC
AAGGGAAGCATGGCCGGCGACGGGCTCGGGGTGTGCCTCTGGTGGGACGACATGTGA
Gene >Hirsu2|9898
ATGTTTATTCTTGTAAGTTGAGGTACCCCCCTCCACTCACCTGTCGCGATGTCCTTCTCCAAACGATTGGGCCTC
GACTCAATGCGCGCCCGTCTGTAGACGAAAATCTCCGATCTGGTGCAGATCGAGCCCAACGACTTCTCCAAGCAC
AGCATCGTCGCCATCGAGGACAACATCAACGCCAAGTACTCCAACAAGGTCAGCCGCAGCCGAACTACGTGGCGC
TGCGCAGCACGGCTGACGCGCTGCCGGCGATAGGTCATCCAGAAAATCGGCCTGTGCATATGCCTGTACGACCTT
CTCTGGTCCTCGGAGGGCCTCATCGGCCATAAGACCGGTCTCGTCAACGTCAACGGTAGCAGCTGGCCCCCCCTC
AACCGCCTCCAGATTCTCTGCCCGACCTCTGGCTGACCGGGCCCGCGTGCAGTCGAGTTTCGCATGGTCGTCTTC
CGGCCCTTCAAGGGAGAGGTGATGCTGGGCCGAATACGCAGTTCCACCCCGGCCGGCATCAACCTGAGAACCGAC
TTCTTCGACGACATCTTCATCCCGTTCGACCAGCTGCCCGAAGGCTCCGAATAGTGAGTGCTGCGCAGAAACCGC
TTTGGCCGAAAGGAAGGGACATATGCTGACAGTGTTTCTTTTTTTTTCTGCCATATAGTAGCCACAGCGAGCAAC
TCTGGATCTGGACCATGGACGAGGTGCGGCTATTCTACGACGCCAACGAGATGGTCCGCTTCCAGGTCATCGAGG
AGGAGTGGCACGACCAGACACCGGCGGGGCCATCGCAAGGGGAAGACGTGCCGGCCAAGACGCCGTACAAGATCA
AGGGAAGCATGGCCGGCGACGGGCTCGGGGTGTGCCTCTGGTGGGACGACATGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail