Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|9854
Gene name
LocationContig_75:2719..3130
Strand+
Gene length (bp)411
Transcript length (bp)294
Coding sequence length (bp)294
Protein length (aa) 98

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01679 Pmp3 Proteolipid membrane potential modulator 1.1E-20 7 54

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q4WYA5|PMP3_ASPFU Plasma membrane proteolipid 3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pmp3 PE=3 SV=1 4 56 8.0E-13
sp|Q4HXT6|PMP3_GIBZE Plasma membrane proteolipid 3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PMP3 PE=3 SV=2 4 56 5.0E-11
sp|Q871V2|PMP3_NEUCR Plasma membrane proteolipid 3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pmp-1 PE=3 SV=1 4 56 7.0E-11
sp|Q9C1W4|PMP3_SCHPO Plasma membrane proteolipid 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmp3 PE=3 SV=2 5 56 4.0E-08
sp|Q22702|YCU5_CAEEL UPF0057 membrane protein T23F2.5 OS=Caenorhabditis elegans GN=T23F2.5 PE=3 SV=1 11 56 9.0E-08
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q4WYA5|PMP3_ASPFU Plasma membrane proteolipid 3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pmp3 PE=3 SV=1 4 56 8.0E-13
sp|Q4HXT6|PMP3_GIBZE Plasma membrane proteolipid 3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PMP3 PE=3 SV=2 4 56 5.0E-11
sp|Q871V2|PMP3_NEUCR Plasma membrane proteolipid 3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pmp-1 PE=3 SV=1 4 56 7.0E-11
sp|Q9C1W4|PMP3_SCHPO Plasma membrane proteolipid 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmp3 PE=3 SV=2 5 56 4.0E-08
sp|Q22702|YCU5_CAEEL UPF0057 membrane protein T23F2.5 OS=Caenorhabditis elegans GN=T23F2.5 PE=3 SV=1 11 56 9.0E-08
sp|P0AE42|YQAE_ECOLI UPF0057 membrane protein YqaE OS=Escherichia coli (strain K12) GN=yqaE PE=3 SV=1 10 53 1.0E-07
sp|P0AE43|YQAE_ECOL6 UPF0057 membrane protein YqaE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yqaE PE=3 SV=1 10 53 1.0E-07
sp|P0AE44|YQAE_ECO57 UPF0057 membrane protein YqaE OS=Escherichia coli O157:H7 GN=yqaE PE=3 SV=1 10 53 1.0E-07
sp|P34655|YOT0_CAEEL UPF0057 membrane protein ZK632.10 OS=Caenorhabditis elegans GN=ZK632.10 PE=3 SV=2 7 52 2.0E-07
sp|Q9Y068|RIC1_PHYIN Protein Ric1 OS=Phytophthora infestans GN=RIC1 PE=3 SV=1 10 52 3.0E-07
sp|Q9ZNQ7|RCI2A_ARATH Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1 10 52 6.0E-07
sp|Q9M095|RC23_ARATH UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=3 SV=1 10 73 4.0E-06
sp|Q6BVN0|PMP3_DEBHA Plasma membrane proteolipid 3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PMP3 PE=3 SV=1 16 56 5.0E-06
[Show less]

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0044425 membrane part No
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 24 0.5

Transmembrane Domains

Domain # Start End Length
1 7 26 19
2 31 50 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|9854
MGVASTVLLVLVTILFPPAGVWAVAGCGMDLFINVCLTLLGYIPGHLHAFYIEYVYYDRREQAHEGRFPTGPAPG
VYSDNVQTGGQGYGTMAAQPVA*
Coding >Hirsu2|9854
ATGGGTGTCGCATCGACGGTCCTCCTCGTGCTCGTCACCATCCTCTTTCCCCCCGCCGGTGTCTGGGCCGTGGCA
GGCTGCGGAATGGACCTCTTCATCAACGTCTGCCTGACCCTGCTGGGGTACATACCCGGGCACCTGCATGCCTTC
TACATCGAGTACGTCTACTACGATCGTCGCGAGCAGGCCCACGAGGGCCGTTTCCCAACCGGCCCTGCCCCGGGC
GTCTACTCGGACAACGTCCAAACCGGCGGCCAGGGCTACGGCACCATGGCCGCGCAGCCTGTCGCCTAG
Transcript >Hirsu2|9854
ATGGGTGTCGCATCGACGGTCCTCCTCGTGCTCGTCACCATCCTCTTTCCCCCCGCCGGTGTCTGGGCCGTGGCA
GGCTGCGGAATGGACCTCTTCATCAACGTCTGCCTGACCCTGCTGGGGTACATACCCGGGCACCTGCATGCCTTC
TACATCGAGTACGTCTACTACGATCGTCGCGAGCAGGCCCACGAGGGCCGTTTCCCAACCGGCCCTGCCCCGGGC
GTCTACTCGGACAACGTCCAAACCGGCGGCCAGGGCTACGGCACCATGGCCGCGCAGCCTGTCGCCTAG
Gene >Hirsu2|9854
ATGGGTGTCGCATCGACGGTCCTCCTCGTGCTCGTCACCATCCTCTGTAGGGCCTCTGTCGTCGCGCGGGGCCCG
AGCGTGTTTGCTGACCTGTCTCGCAGTTCCCCCCGCCGGTGTCTGGGCCGTGGCAGGCTGCGGAATGGGTTCGTG
GCGGACGGCGGATGCGCGTGCCGGAGACAAGGGCGGCCTGCTAATGTTCGTCTAGACCTCTTCATCAACGTCTGC
CTGACCCTGCTGGGGTACATACCCGGGCACCTGCATGCCTTCTACATCGAGTACGTCTACTACGATCGTCGCGAG
CAGGCCCACGAGGGCCGTTTCCCAACCGGCCCTGCCCCGGGCGTCTACTCGGACAACGTCCAAACCGGCGGCCAG
GGCTACGGCACCATGGCCGCGCAGCCTGTCGCCTAG

© 2020 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail