© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|9841 |
| Gene name | |
| Location | Contig_746:6308..7369 |
| Strand | - |
| Gene length (bp) | 1061 |
| Transcript length (bp) | 1011 |
| Coding sequence length (bp) | 1011 |
| Protein length (aa) | 337 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13821 | DUF4187 | Domain of unknown function (DUF4187) | 2.8E-20 | 284 | 335 |
| PF01585 | G-patch | G-patch domain | 3.2E-08 | 88 | 134 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6DGZ0|GPT11_DANRE | G patch domain-containing protein 11 OS=Danio rerio GN=gpatch11 PE=2 SV=1 | 21 | 214 | 3.0E-15 |
| sp|Q3UFS4|GPT11_MOUSE | G patch domain-containing protein 11 OS=Mus musculus GN=Gpatch11 PE=1 SV=2 | 23 | 192 | 3.0E-09 |
| sp|Q8N954|GPT11_HUMAN | G patch domain-containing protein 11 OS=Homo sapiens GN=GPATCH11 PE=1 SV=3 | 23 | 192 | 6.0E-09 |
| sp|Q2KI19|GPT11_BOVIN | G patch domain-containing protein 11 OS=Bos taurus GN=GPATCH11 PE=2 SV=2 | 23 | 200 | 8.0E-09 |
| sp|Q6DF57|GPT11_XENTR | G patch domain-containing protein 11 OS=Xenopus tropicalis GN=gpatch11 PE=2 SV=1 | 20 | 208 | 1.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003676 | nucleic acid binding | Yes |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9841 MTSKTPSGKGADMTGRDGSEDGEDDYMSMTFAEPDKPNESSLQRTQRLKRESQARGFTKSKAQLAEEEAEARKKA LSRSLLDDPRAKQSKGLAMMAKMGFTGGGLGKKTDQGASSGRTEPIMVSVKEDRGGIGLDSENKRRLQEEEAQRE AKAVKVEPMDPEQYRERAGRERDEARREKQFHAAQRLIERLDEDEVPGTPARPQPIPRDASSRPLKAIPLVYRGL VRFREEQQHDQLRRRELEQSISRYPRYDDPEADEDDKMALGQQEMKPLAAADDLHEEDEELEKFNALDAGERLRR AVDYLRQNHHYCFWCKMAYPNAQLEGCPGLTEDDHE* |
| Coding | >Hirsu2|9841 ATGACATCAAAGACGCCATCAGGCAAGGGCGCCGACATGACAGGTCGTGACGGCAGCGAGGACGGCGAGGATGAC TATATGAGCATGACGTTTGCAGAACCAGACAAGCCCAATGAGAGCTCCCTGCAGCGGACCCAGCGCCTGAAGCGC GAGTCTCAGGCCCGCGGCTTCACCAAGTCCAAGGCGCAGCTCGCGGAGGAGGAAGCAGAGGCCCGGAAGAAGGCC CTGTCCAGGTCGCTGCTCGACGACCCGCGGGCCAAGCAGAGCAAGGGCCTGGCTATGATGGCCAAGATGGGCTTC ACCGGCGGCGGCCTGGGCAAGAAGACGGACCAGGGCGCCTCGTCCGGCCGGACCGAGCCCATCATGGTCAGCGTC AAGGAGGACCGCGGCGGCATCGGGCTCGACAGCGAGAACAAGCGGCGGCTGCAGGAGGAGGAGGCGCAGCGGGAG GCCAAGGCCGTCAAGGTGGAGCCGATGGACCCGGAGCAGTACCGCGAGCGCGCCGGCAGGGAGCGCGACGAGGCC AGGCGCGAGAAGCAGTTCCACGCGGCCCAGCGCCTCATCGAGCGCCTGGACGAGGACGAGGTCCCGGGCACGCCC GCCCGCCCGCAGCCGATCCCCCGCGACGCGTCCTCGCGCCCGCTCAAGGCGATCCCCCTCGTCTACCGCGGCCTC GTCCGCTTCCGCGAGGAGCAGCAGCACGACCAGCTCCGGCGACGCGAGCTCGAGCAGTCCATCTCGCGCTACCCC CGCTACGACGACCCGGAGGCCGACGAGGACGACAAGATGGCCCTCGGCCAGCAGGAGATGAAGCCGCTCGCCGCC GCGGACGACCTGCACGAGGAGGACGAGGAGCTCGAGAAGTTCAACGCGCTCGACGCCGGCGAGCGATTGCGCAGG GCCGTCGACTACCTGCGCCAGAACCACCACTACTGCTTCTGGTGCAAGATGGCCTATCCCAACGCGCAGTTAGAG GGGTGCCCAGGCCTAACAGAGGACGATCACGAGTAA |
| Transcript | >Hirsu2|9841 ATGACATCAAAGACGCCATCAGGCAAGGGCGCCGACATGACAGGTCGTGACGGCAGCGAGGACGGCGAGGATGAC TATATGAGCATGACGTTTGCAGAACCAGACAAGCCCAATGAGAGCTCCCTGCAGCGGACCCAGCGCCTGAAGCGC GAGTCTCAGGCCCGCGGCTTCACCAAGTCCAAGGCGCAGCTCGCGGAGGAGGAAGCAGAGGCCCGGAAGAAGGCC CTGTCCAGGTCGCTGCTCGACGACCCGCGGGCCAAGCAGAGCAAGGGCCTGGCTATGATGGCCAAGATGGGCTTC ACCGGCGGCGGCCTGGGCAAGAAGACGGACCAGGGCGCCTCGTCCGGCCGGACCGAGCCCATCATGGTCAGCGTC AAGGAGGACCGCGGCGGCATCGGGCTCGACAGCGAGAACAAGCGGCGGCTGCAGGAGGAGGAGGCGCAGCGGGAG GCCAAGGCCGTCAAGGTGGAGCCGATGGACCCGGAGCAGTACCGCGAGCGCGCCGGCAGGGAGCGCGACGAGGCC AGGCGCGAGAAGCAGTTCCACGCGGCCCAGCGCCTCATCGAGCGCCTGGACGAGGACGAGGTCCCGGGCACGCCC GCCCGCCCGCAGCCGATCCCCCGCGACGCGTCCTCGCGCCCGCTCAAGGCGATCCCCCTCGTCTACCGCGGCCTC GTCCGCTTCCGCGAGGAGCAGCAGCACGACCAGCTCCGGCGACGCGAGCTCGAGCAGTCCATCTCGCGCTACCCC CGCTACGACGACCCGGAGGCCGACGAGGACGACAAGATGGCCCTCGGCCAGCAGGAGATGAAGCCGCTCGCCGCC GCGGACGACCTGCACGAGGAGGACGAGGAGCTCGAGAAGTTCAACGCGCTCGACGCCGGCGAGCGATTGCGCAGG GCCGTCGACTACCTGCGCCAGAACCACCACTACTGCTTCTGGTGCAAGATGGCCTATCCCAACGCGCAGTTAGAG GGGTGCCCAGGCCTAACAGAGGACGATCACGAGTAA |
| Gene | >Hirsu2|9841 ATGACATCAAAGAGTGAGCGACATCAGCGTCGGGAGCGGCAACGCGGGCTTACCATCCTCCAGCGCCATCAGGCA AGGGCGCCGACATGACAGGTCGTGACGGCAGCGAGGACGGCGAGGATGACTATATGAGCATGACGTTTGCAGAAC CAGACAAGCCCAATGAGAGCTCCCTGCAGCGGACCCAGCGCCTGAAGCGCGAGTCTCAGGCCCGCGGCTTCACCA AGTCCAAGGCGCAGCTCGCGGAGGAGGAAGCAGAGGCCCGGAAGAAGGCCCTGTCCAGGTCGCTGCTCGACGACC CGCGGGCCAAGCAGAGCAAGGGCCTGGCTATGATGGCCAAGATGGGCTTCACCGGCGGCGGCCTGGGCAAGAAGA CGGACCAGGGCGCCTCGTCCGGCCGGACCGAGCCCATCATGGTCAGCGTCAAGGAGGACCGCGGCGGCATCGGGC TCGACAGCGAGAACAAGCGGCGGCTGCAGGAGGAGGAGGCGCAGCGGGAGGCCAAGGCCGTCAAGGTGGAGCCGA TGGACCCGGAGCAGTACCGCGAGCGCGCCGGCAGGGAGCGCGACGAGGCCAGGCGCGAGAAGCAGTTCCACGCGG CCCAGCGCCTCATCGAGCGCCTGGACGAGGACGAGGTCCCGGGCACGCCCGCCCGCCCGCAGCCGATCCCCCGCG ACGCGTCCTCGCGCCCGCTCAAGGCGATCCCCCTCGTCTACCGCGGCCTCGTCCGCTTCCGCGAGGAGCAGCAGC ACGACCAGCTCCGGCGACGCGAGCTCGAGCAGTCCATCTCGCGCTACCCCCGCTACGACGACCCGGAGGCCGACG AGGACGACAAGATGGCCCTCGGCCAGCAGGAGATGAAGCCGCTCGCCGCCGCGGACGACCTGCACGAGGAGGACG AGGAGCTCGAGAAGTTCAACGCGCTCGACGCCGGCGAGCGATTGCGCAGGGCCGTCGACTACCTGCGCCAGAACC ACCACTACTGCTTCTGGTGCAAGATGGCCTATCCCAACGCGCAGTTAGAGGGGTGCCCAGGCCTAACAGAGGACG ATCACGAGTAA |