Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|983
Gene name
LocationContig_1202:2986..3485
Strand-
Gene length (bp)499
Transcript length (bp)210
Coding sequence length (bp)210
Protein length (aa) 70

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-09 9 57

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P78814|SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp2 PE=1 SV=2 4 58 4.0E-10
sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis elegans GN=rsp-2 PE=3 SV=1 8 57 6.0E-07
sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis elegans GN=rsp-1 PE=3 SV=1 6 57 1.0E-06
sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus GN=Srsf5 PE=1 SV=1 4 57 2.0E-06
sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5 PE=1 SV=2 4 57 2.0E-06
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[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P78814|SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp2 PE=1 SV=2 4 58 4.0E-10
sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis elegans GN=rsp-2 PE=3 SV=1 8 57 6.0E-07
sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis elegans GN=rsp-1 PE=3 SV=1 6 57 1.0E-06
sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus GN=Srsf5 PE=1 SV=1 4 57 2.0E-06
sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5 PE=1 SV=2 4 57 2.0E-06
sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5 PE=1 SV=1 4 57 2.0E-06
sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5 OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3 8 58 6.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Extracellular 0.6423 0.3763 0.6665 0.0586 0.5819 0.1539 0.3385 0.0984 0.3529 0.0143

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup11026
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|983 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|983
MTEVSATRLYLGNLPRNATKADVEAHFATHGTGEITEVKLMNGFGFIEYKDPMDARDVPSTGPTSWESA*
Coding >Hirsu2|983
ATGACCGAGGTTTCGGCCACCAGGCTCTACCTGGGCAACCTCCCGCGCAATGCTACCAAGGCCGACGTCGAGGCT
CACTTCGCGACTCATGGCACCGGAGAGATCACCGAGGTCAAGCTCATGAACGGCTTCGGCTTCATCGAGTACAAA
GACCCCATGGATGCCCGAGATGTGCCTTCCACGGGTCCGACTTCATGGGAGAGCGCCTGA
Transcript >Hirsu2|983
ATGACCGAGGTTTCGGCCACCAGGCTCTACCTGGGCAACCTCCCGCGCAATGCTACCAAGGCCGACGTCGAGGCT
CACTTCGCGACTCATGGCACCGGAGAGATCACCGAGGTCAAGCTCATGAACGGCTTCGGCTTCATCGAGTACAAA
GACCCCATGGATGCCCGAGATGTGCCTTCCACGGGTCCGACTTCATGGGAGAGCGCCTGA
Gene >Hirsu2|983
ATGACCGAGGTTTCGGCCACCAGGCTCTACCTGGGCAACCTCCCGCGCAATGGTTCATAGCCCTTCCCGAGGCGC
CCGCCGTCGTCTTGTTTTCCCGTGGCGGCGACTGACGCGCTGGCGGCAGCTACCAAGGCCGACGTCGAGGCTCAC
TTCGCGACTCATGGCACCGGAGAGATCACCGAGGTCAAGCTCATGAACGGCTTCGGCTTCATCGAGTACAAAGAC
CCCATGGATGCCCGAGATGTGGTTCCCGGTACGTCGACCTGCCAACCGCCGGCCTAGGGGACACCATTCCGCGGC
ACCTCCCGCGCGACCACTCTTGCTGACCTTGGGACTCGCCGTCTTTCCTCTTGGCATCCGACAGCCTTCCGTACG
TCTCCTTCTGCACACCCTGCCAGCCGGCTCTGGAAGAGCTCGACCCGACCCCGTGGCGTCTCGCTTAGCTGACTC
GGCCCTGCTGCCGCCGCAGACGGGTCCGACTTCATGGGAGAGCGCCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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