Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|982
Gene name
LocationContig_1202:1680..2584
Strand-
Gene length (bp)904
Transcript length (bp)660
Coding sequence length (bp)660
Protein length (aa) 220

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-07 6 55

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1 SV=4 3 60 4.0E-07
sp|G3V6S8|SRSF6_RAT Serine/arginine-rich splicing factor 6 OS=Rattus norvegicus GN=Srsf6 PE=1 SV=1 3 60 5.0E-06
sp|Q3TWW8|SRSF6_MOUSE Serine/arginine-rich splicing factor 6 OS=Mus musculus GN=Srsf6 PE=1 SV=1 3 60 5.0E-06
sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6 PE=1 SV=2 3 60 6.0E-06
sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2 SV=1 3 60 7.0E-06
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Swissprot ID Swissprot Description Start End E-value
sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1 SV=4 3 60 4.0E-07
sp|G3V6S8|SRSF6_RAT Serine/arginine-rich splicing factor 6 OS=Rattus norvegicus GN=Srsf6 PE=1 SV=1 3 60 5.0E-06
sp|Q3TWW8|SRSF6_MOUSE Serine/arginine-rich splicing factor 6 OS=Mus musculus GN=Srsf6 PE=1 SV=1 3 60 5.0E-06
sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6 PE=1 SV=2 3 60 6.0E-06
sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2 SV=1 3 60 7.0E-06
sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4 PE=2 SV=1 3 60 7.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.4755 0.8798 0.0191 0.0739 0.0958 0.0092 0.0656 0.0141 0.0014 0.0002

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup5794
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|584
Ophiocordyceps camponoti-floridani Ophcf2|01517
Ophiocordyceps camponoti-rufipedis Ophun1|5239
Ophiocordyceps kimflemingae Ophio5|2766
Ophiocordyceps subramaniannii Hirsu2|982 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|982
MDDLKDFARQSSLDVVYSETGRDSNGRGFVEFETAADLRTAVEKLDGREFKGNRVQCVADTQPDMPPRDRGRSRS
PGRRPYMPPFEEYDRRVPPRGAGGSSSGGAGGGGGGTGGGGGGTGYSPRRETGQYGYRDRSPRREYYEDRARYRS
PPRRPVDDYPPPRARYDDPYRRDYPPPPPDPYANGRAYDRPPRDFPPREPAYPPRDGYARDYERSGRYW*
Coding >Hirsu2|982
ATGGATGATCTCAAAGACTTTGCACGCCAGTCCAGCCTGGACGTGGTCTACTCCGAGACTGGCCGCGACTCCAAC
GGCAGAGGCTTTGTTGAATTCGAAACGGCCGCGGACTTGAGAACCGCGGTGGAGAAGCTCGATGGCCGGGAGTTT
AAGGGCAACCGCGTCCAGTGCGTGGCTGATACCCAACCAGACATGCCCCCACGAGACCGAGGCCGCTCCCGTTCC
CCGGGGCGCCGTCCGTACATGCCTCCGTTCGAGGAGTATGACCGTCGCGTGCCTCCCCGGGGCGCCGGAGGCAGC
AGCAGCGGAGGGGCCGGTGGCGGTGGCGGCGGTACCGGCGGCGGCGGCGGCGGTACCGGTTACAGTCCCCGCCGC
GAGACTGGCCAGTACGGATATCGCGACCGGAGCCCTCGCCGCGAGTACTACGAGGACCGCGCCCGCTACCGCTCT
CCCCCCCGCCGGCCGGTGGACGACTACCCGCCCCCGCGGGCACGCTACGATGACCCGTACCGCCGCGACTACCCG
CCTCCGCCGCCGGACCCATACGCCAACGGCCGAGCGTACGACCGACCGCCGAGGGACTTTCCTCCTCGAGAGCCT
GCGTACCCGCCGCGAGACGGGTACGCGCGCGATTATGAACGGAGTGGGCGCTACTGGTAA
Transcript >Hirsu2|982
ATGGATGATCTCAAAGACTTTGCACGCCAGTCCAGCCTGGACGTGGTCTACTCCGAGACTGGCCGCGACTCCAAC
GGCAGAGGCTTTGTTGAATTCGAAACGGCCGCGGACTTGAGAACCGCGGTGGAGAAGCTCGATGGCCGGGAGTTT
AAGGGCAACCGCGTCCAGTGCGTGGCTGATACCCAACCAGACATGCCCCCACGAGACCGAGGCCGCTCCCGTTCC
CCGGGGCGCCGTCCGTACATGCCTCCGTTCGAGGAGTATGACCGTCGCGTGCCTCCCCGGGGCGCCGGAGGCAGC
AGCAGCGGAGGGGCCGGTGGCGGTGGCGGCGGTACCGGCGGCGGCGGCGGCGGTACCGGTTACAGTCCCCGCCGC
GAGACTGGCCAGTACGGATATCGCGACCGGAGCCCTCGCCGCGAGTACTACGAGGACCGCGCCCGCTACCGCTCT
CCCCCCCGCCGGCCGGTGGACGACTACCCGCCCCCGCGGGCACGCTACGATGACCCGTACCGCCGCGACTACCCG
CCTCCGCCGCCGGACCCATACGCCAACGGCCGAGCGTACGACCGACCGCCGAGGGACTTTCCTCCTCGAGAGCCT
GCGTACCCGCCGCGAGACGGGTACGCGCGCGATTATGAACGGAGTGGGCGCTACTGGTAA
Gene >Hirsu2|982
ATGGATGTATAATCTGGCGGATCTGTGGACCTCGTTCTCGGCATTGTCGCCAAGCACGTGGTCCCTTCCCCCTGG
GGATAACGACTTACGTGGAATCTGGAACATAGGATCTCAAAGACTTTGCACGCCAGTCCAGCCTGGACGTGGTCT
ACTCCGAGACTGGCCGCGACTCCAACGGCAGAGGGTACGAGAGGGTTCCGCCCTTGCTGCCCAGCGCCGTGATTC
GCTAACCGCCACGGCAGCTTTGTTGAATTCGAAACGGCCGCGGACTTGAGAACCGCGGTGGAGAAGCTCGATGGC
CGGGAGTTTAAGGGCAACCGCGTCCAGTGCGTGGCTGATGTGAGTTGAAGGCGCCCGTCTTTACTCCCCGCCTCC
TCGACTGCGTCGTGACTCGACGGCACATCTCTAACATGAGTGACTGCAGACCCAACCAGACATGCCCCCACGAGA
CCGAGGCCGCTCCCGTTCCCCGGGGCGCCGTCCGTACATGCCTCCGTTCGAGGAGTATGACCGTCGCGTGCCTCC
CCGGGGCGCCGGAGGCAGCAGCAGCGGAGGGGCCGGTGGCGGTGGCGGCGGTACCGGCGGCGGCGGCGGCGGTAC
CGGTTACAGTCCCCGCCGCGAGACTGGCCAGTACGGATATCGCGACCGGAGCCCTCGCCGCGAGTACTACGAGGA
CCGCGCCCGCTACCGCTCTCCCCCCCGCCGGCCGGTGGACGACTACCCGCCCCCGCGGGCACGCTACGATGACCC
GTACCGCCGCGACTACCCGCCTCCGCCGCCGGACCCATACGCCAACGGCCGAGCGTACGACCGACCGCCGAGGGA
CTTTCCTCCTCGAGAGCCTGCGTACCCGCCGCGAGACGGGTACGCGCGCGATTATGAACGGAGTGGGCGCTACTG
GTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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