Protein ID | Hirsu2|9813 |
Gene name | |
Location | Contig_740:6667..7426 |
Strand | - |
Gene length (bp) | 759 |
Transcript length (bp) | 759 |
Coding sequence length (bp) | 759 |
Protein length (aa) | 253 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08787 | Alginate_lyase2 | Alginate lyase | 5.5E-37 | 34 | 251 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1245 | 0.0616 | 0.9473 | 0.1136 | 0.1677 | 0.0885 | 0.1564 | 0.1269 | 0.1452 | 0.0247 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 22 | 0.999642 |
CAZyme category | E-value | Start | End |
---|---|---|---|
PL7_4 | 1.4E-54 | 34 | 251 |
Orthofinder run ID | 4 |
Orthogroup | 5179 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|9813 MLLSRCSALLTLAAAVARPAAARLDPDCAPGGNFDLRHWYLQLPTGLPGRIDTVPSKGLQGCHGYNDSSFYTDRA TGEMVLKAPGHPSLTGCATTGGSKHCRTELREVDKRSGRNTVWSPGSVNILGVTIKVVRADDGRHGTAIGQVFAL GFGPLAEMYYSRSGRIVVGVKPKPGAKQRMTSVGQVPPGTSFHYEMSYSRHVLSVSIDGTQTLLDVSAWASPSCY FKSGNYNQARTKAGSEVRIAAVNVTHA* |
Coding | >Hirsu2|9813 ATGCTCCTCTCCCGATGCTCGGCCCTCCTGACCCTGGCCGCCGCCGTGGCCCGACCGGCGGCGGCAAGGCTCGAT CCGGATTGTGCTCCGGGAGGCAACTTCGACCTCAGACACTGGTATCTCCAACTGCCGACCGGGCTTCCCGGACGG ATCGACACGGTTCCGAGCAAGGGCCTGCAGGGCTGCCACGGCTACAACGACAGCAGCTTCTACACGGACAGGGCG ACGGGCGAGATGGTGCTCAAGGCCCCGGGCCATCCGTCCTTGACGGGATGCGCCACGACGGGCGGCAGCAAGCAC TGCCGGACGGAGCTGCGCGAGGTCGACAAGCGCAGCGGGCGCAACACGGTCTGGAGCCCCGGGAGCGTCAACATT CTCGGGGTGACGATCAAGGTGGTCAGGGCCGACGACGGCCGGCACGGGACGGCCATCGGCCAAGTCTTTGCCCTG GGCTTCGGGCCCCTGGCCGAGATGTACTACAGCCGAAGCGGGCGGATCGTGGTCGGGGTGAAGCCGAAGCCCGGC GCAAAGCAGCGGATGACGAGCGTGGGCCAGGTGCCGCCCGGGACGTCGTTCCACTACGAGATGTCCTATTCCAGA CACGTCCTGTCAGTGTCCATCGACGGCACGCAAACGCTCCTCGACGTGAGCGCCTGGGCCTCGCCGAGCTGCTAC TTCAAGTCGGGCAACTATAATCAGGCAAGGACGAAGGCCGGGTCCGAGGTGCGGATCGCGGCAGTCAACGTGACA CATGCCTAG |
Transcript | >Hirsu2|9813 ATGCTCCTCTCCCGATGCTCGGCCCTCCTGACCCTGGCCGCCGCCGTGGCCCGACCGGCGGCGGCAAGGCTCGAT CCGGATTGTGCTCCGGGAGGCAACTTCGACCTCAGACACTGGTATCTCCAACTGCCGACCGGGCTTCCCGGACGG ATCGACACGGTTCCGAGCAAGGGCCTGCAGGGCTGCCACGGCTACAACGACAGCAGCTTCTACACGGACAGGGCG ACGGGCGAGATGGTGCTCAAGGCCCCGGGCCATCCGTCCTTGACGGGATGCGCCACGACGGGCGGCAGCAAGCAC TGCCGGACGGAGCTGCGCGAGGTCGACAAGCGCAGCGGGCGCAACACGGTCTGGAGCCCCGGGAGCGTCAACATT CTCGGGGTGACGATCAAGGTGGTCAGGGCCGACGACGGCCGGCACGGGACGGCCATCGGCCAAGTCTTTGCCCTG GGCTTCGGGCCCCTGGCCGAGATGTACTACAGCCGAAGCGGGCGGATCGTGGTCGGGGTGAAGCCGAAGCCCGGC GCAAAGCAGCGGATGACGAGCGTGGGCCAGGTGCCGCCCGGGACGTCGTTCCACTACGAGATGTCCTATTCCAGA CACGTCCTGTCAGTGTCCATCGACGGCACGCAAACGCTCCTCGACGTGAGCGCCTGGGCCTCGCCGAGCTGCTAC TTCAAGTCGGGCAACTATAATCAGGCAAGGACGAAGGCCGGGTCCGAGGTGCGGATCGCGGCAGTCAACGTGACA CATGCCTAG |
Gene | >Hirsu2|9813 ATGCTCCTCTCCCGATGCTCGGCCCTCCTGACCCTGGCCGCCGCCGTGGCCCGACCGGCGGCGGCAAGGCTCGAT CCGGATTGTGCTCCGGGAGGCAACTTCGACCTCAGACACTGGTATCTCCAACTGCCGACCGGGCTTCCCGGACGG ATCGACACGGTTCCGAGCAAGGGCCTGCAGGGCTGCCACGGCTACAACGACAGCAGCTTCTACACGGACAGGGCG ACGGGCGAGATGGTGCTCAAGGCCCCGGGCCATCCGTCCTTGACGGGATGCGCCACGACGGGCGGCAGCAAGCAC TGCCGGACGGAGCTGCGCGAGGTCGACAAGCGCAGCGGGCGCAACACGGTCTGGAGCCCCGGGAGCGTCAACATT CTCGGGGTGACGATCAAGGTGGTCAGGGCCGACGACGGCCGGCACGGGACGGCCATCGGCCAAGTCTTTGCCCTG GGCTTCGGGCCCCTGGCCGAGATGTACTACAGCCGAAGCGGGCGGATCGTGGTCGGGGTGAAGCCGAAGCCCGGC GCAAAGCAGCGGATGACGAGCGTGGGCCAGGTGCCGCCCGGGACGTCGTTCCACTACGAGATGTCCTATTCCAGA CACGTCCTGTCAGTGTCCATCGACGGCACGCAAACGCTCCTCGACGTGAGCGCCTGGGCCTCGCCGAGCTGCTAC TTCAAGTCGGGCAACTATAATCAGGCAAGGACGAAGGCCGGGTCCGAGGTGCGGATCGCGGCAGTCAACGTGACA CATGCCTAG |