Protein ID | Hirsu2|98 |
Gene name | |
Location | Contig_1012:4369..6037 |
Strand | - |
Gene length (bp) | 1668 |
Transcript length (bp) | 1545 |
Coding sequence length (bp) | 1545 |
Protein length (aa) | 515 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00010 | HLH | Helix-loop-helix DNA-binding domain | 1.0E-11 | 345 | 388 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q04635|ESC1_SCHPO | Protein esc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=esc1 PE=2 SV=1 | 330 | 419 | 2.0E-17 |
GO Term | Description | Terminal node |
---|---|---|
GO:0046983 | protein dimerization activity | Yes |
GO:0003674 | molecular_function | No |
GO:0005515 | protein binding | No |
GO:0005488 | binding | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm|Nucleus | Nuclear localization signal | 0.5328 | 0.7789 | 0.0831 | 0.0398 | 0.1321 | 0.0003 | 0.0554 | 0.0833 | 0.031 | 0.0029 |
Transcription Factor Class (based on PFAM domains) |
---|
Helix-loop-helix |
Orthofinder run ID | 4 |
Orthogroup | 4651 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|98 MTAAMETHAQQHPRPAPAKAAGLTNILNKDDQPPSHNAPLPQLRDSGFYSTAEASSKHTSAASFSVNGLSPTASG YQSSSADKTPSPVAANMVPQALVSPSASNMSVASMVSPTSPGSIDQRRFDRPTSLESNGAMLGENLAAGLSAARR ESVDSRINQGFSDMRLGSSPYTSNNQSTSSIQNTLHSQRNPRPGLEALSVHRISNGYQPSADRNPEPKTVKTAPA ITGPATGHIARAAEPTKGQAWAFPEEEISRVGPPGRYDDSRRSSITESIASSQFTTESRLPPGQRRLDDGSDHLR MSHTSGEFPPVHHHSMQHKQLSDLQAEEANGPSGSQPYSRTPELRVSHKLAERKRRTEMKELFDQLRDLMPQERG SKASKWEILTKAIAEHQRQSEHIRVLQAHYNTALTDNDMLRRELHSLRMDGAHPSSHAQQGPPPPPPPPQQQPPP PPQQAQQQQGSQPGSYAADPYAGASRTELPPLRSISNSLPNGPDSMTGVQYEAPRVNGYRHERY* |
Coding | >Hirsu2|98 ATGACGGCGGCGATGGAGACGCATGCCCAGCAACATCCGCGCCCCGCGCCCGCCAAGGCGGCGGGCCTGACAAAC ATACTCAACAAGGACGATCAACCGCCATCGCACAATGCTCCCCTCCCCCAGCTGCGTGATTCGGGCTTCTACTCG ACGGCCGAGGCCTCGAGCAAACATACCTCTGCCGCCTCGTTCAGCGTCAACGGCCTGAGCCCGACCGCCTCGGGC TACCAGTCGTCGTCGGCCGACAAGACGCCCTCGCCCGTCGCCGCCAACATGGTGCCACAAGCCCTCGTCTCCCCG TCCGCCAGCAACATGAGCGTCGCCTCCATGGTCTCGCCCACGAGCCCCGGCAGCATCGATCAACGTCGATTCGAC CGACCCACCTCGCTCGAGTCCAACGGCGCCATGCTGGGCGAGAACCTGGCCGCCGGCCTCTCGGCCGCGAGGCGC GAGAGCGTCGACAGCAGGATCAATCAGGGCTTCAGCGACATGCGTCTCGGCAGCTCTCCGTACACGAGCAACAAC CAGTCGACGAGCTCGATCCAGAACACGCTCCACTCCCAGCGGAATCCCCGCCCCGGCCTCGAGGCTCTGTCCGTC CACCGAATCTCCAACGGCTACCAGCCGAGCGCCGACAGGAACCCGGAACCGAAGACGGTCAAGACGGCGCCGGCT ATCACCGGCCCTGCCACCGGCCACATCGCACGGGCTGCCGAGCCGACTAAGGGTCAGGCTTGGGCGTTCCCCGAG GAGGAGATATCGAGAGTCGGCCCCCCCGGCCGCTACGACGATTCGCGCCGGAGCAGCATCACCGAGTCGATAGCC AGCAGCCAGTTCACCACGGAGTCGCGGCTGCCGCCCGGCCAGCGCAGATTGGACGACGGCTCGGACCACCTCCGC ATGTCACACACGTCGGGCGAGTTCCCGCCCGTCCACCACCACAGCATGCAGCACAAGCAGCTCAGCGACCTGCAG GCCGAAGAGGCCAACGGCCCCTCCGGCTCGCAGCCCTACAGCCGCACCCCCGAGCTGAGGGTCAGCCACAAGCTG GCCGAGAGGAAGCGACGGACCGAGATGAAGGAGCTCTTTGACCAATTGCGCGATCTGATGCCTCAGGAACGCGGA TCCAAGGCCTCCAAGTGGGAGATTTTGACCAAAGCCATCGCGGAACACCAGAGACAGAGCGAGCACATTCGGGTG CTGCAGGCGCACTACAACACGGCCCTGACCGACAACGACATGCTCCGTCGCGAGCTGCACAGCCTGCGGATGGAC GGCGCGCACCCGTCCAGCCACGCCCAGCAGGGCCCGCCGCCCCCGCCCCCGCCGCCGCAACAACAACCGCCGCCG CCACCCCAGCAGGCGCAGCAGCAGCAGGGCTCGCAACCGGGCTCGTATGCCGCCGACCCCTACGCCGGCGCCAGC CGGACCGAGCTCCCGCCGCTGCGCTCCATCAGCAACAGTCTGCCCAACGGGCCGGACTCCATGACGGGCGTCCAG TACGAAGCCCCGAGGGTCAACGGGTATCGGCATGAGAGATACTGA |
Transcript | >Hirsu2|98 ATGACGGCGGCGATGGAGACGCATGCCCAGCAACATCCGCGCCCCGCGCCCGCCAAGGCGGCGGGCCTGACAAAC ATACTCAACAAGGACGATCAACCGCCATCGCACAATGCTCCCCTCCCCCAGCTGCGTGATTCGGGCTTCTACTCG ACGGCCGAGGCCTCGAGCAAACATACCTCTGCCGCCTCGTTCAGCGTCAACGGCCTGAGCCCGACCGCCTCGGGC TACCAGTCGTCGTCGGCCGACAAGACGCCCTCGCCCGTCGCCGCCAACATGGTGCCACAAGCCCTCGTCTCCCCG TCCGCCAGCAACATGAGCGTCGCCTCCATGGTCTCGCCCACGAGCCCCGGCAGCATCGATCAACGTCGATTCGAC CGACCCACCTCGCTCGAGTCCAACGGCGCCATGCTGGGCGAGAACCTGGCCGCCGGCCTCTCGGCCGCGAGGCGC GAGAGCGTCGACAGCAGGATCAATCAGGGCTTCAGCGACATGCGTCTCGGCAGCTCTCCGTACACGAGCAACAAC CAGTCGACGAGCTCGATCCAGAACACGCTCCACTCCCAGCGGAATCCCCGCCCCGGCCTCGAGGCTCTGTCCGTC CACCGAATCTCCAACGGCTACCAGCCGAGCGCCGACAGGAACCCGGAACCGAAGACGGTCAAGACGGCGCCGGCT ATCACCGGCCCTGCCACCGGCCACATCGCACGGGCTGCCGAGCCGACTAAGGGTCAGGCTTGGGCGTTCCCCGAG GAGGAGATATCGAGAGTCGGCCCCCCCGGCCGCTACGACGATTCGCGCCGGAGCAGCATCACCGAGTCGATAGCC AGCAGCCAGTTCACCACGGAGTCGCGGCTGCCGCCCGGCCAGCGCAGATTGGACGACGGCTCGGACCACCTCCGC ATGTCACACACGTCGGGCGAGTTCCCGCCCGTCCACCACCACAGCATGCAGCACAAGCAGCTCAGCGACCTGCAG GCCGAAGAGGCCAACGGCCCCTCCGGCTCGCAGCCCTACAGCCGCACCCCCGAGCTGAGGGTCAGCCACAAGCTG GCCGAGAGGAAGCGACGGACCGAGATGAAGGAGCTCTTTGACCAATTGCGCGATCTGATGCCTCAGGAACGCGGA TCCAAGGCCTCCAAGTGGGAGATTTTGACCAAAGCCATCGCGGAACACCAGAGACAGAGCGAGCACATTCGGGTG CTGCAGGCGCACTACAACACGGCCCTGACCGACAACGACATGCTCCGTCGCGAGCTGCACAGCCTGCGGATGGAC GGCGCGCACCCGTCCAGCCACGCCCAGCAGGGCCCGCCGCCCCCGCCCCCGCCGCCGCAACAACAACCGCCGCCG CCACCCCAGCAGGCGCAGCAGCAGCAGGGCTCGCAACCGGGCTCGTATGCCGCCGACCCCTACGCCGGCGCCAGC CGGACCGAGCTCCCGCCGCTGCGCTCCATCAGCAACAGTCTGCCCAACGGGCCGGACTCCATGACGGGCGTCCAG TACGAAGCCCCGAGGGTCAACGGGTATCGGCATGAGAGATACTGA |
Gene | >Hirsu2|98 ATGACGGCGGCGATGGAGACGCATGCCCAGCAACATCCGCGCCCCGCGCCCGCCAAGGCGGCGGGCCTGACAAAC ATACTCAACAAGGACGATCAACCGCCATCGCACAATGCTCCCCTCCCCCAGCTGCGTGATTCGGGCTTCTACTCG ACGGCCGAGGCCTCGAGCAAACGTATGTCGTCTGCCTTCCTTGACTGCCTCGCTTACGCTCAACGGCGCAGATAC CTCTGCCGCCTCGTTCAGCGTCAACGGCCTGAGCCCGACCGCCTCGGGCTACCAGTCGTCGTCGGCCGACAAGAC GCCCTCGCCCGTCGCCGCCAACATGGTGCCACAAGCCCTCGTCTCCCCGTCCGCCAGCAACATGAGCGTCGCCTC CATGGTCTCGCCCACGAGCCCCGGCAGCATCGATCAACGTCGATTCGACCGACCCACCTCGCTCGAGTCCAACGG CGCCATGCTGGGCGAGAACCTGGCCGCCGGCCTCTCGGCCGCGAGGCGCGAGAGCGTCGACAGCAGGATCAATCA GGGCTTCAGCGACATGCGTCTCGGCAGCTCTCCGTACACGAGCAACAACCAGTCGACGAGCTCGATCCAGAACAC GCTCCACTCCCAGCGGAATCCCCGCCCCGGCCTCGAGGCTCTGTCCGTCCACCGAATCTCCAACGGCTACCAGCC GAGCGCCGACAGGAACCCGGAACCGAAGACGGTCAAGACGGCGCCGGCTATCACCGGCCCTGCCACCGGCCACAT CGCACGGGCTGCCGAGCCGACTAAGGGTCAGGCTTGGGCGTTCCCCGAGGAGGAGATATCGAGAGTCGGCCCCCC CGGCCGCTACGACGATTCGCGCCGGAGCAGCATCACCGAGTCGATAGCCAGCAGCCAGTTCACCACGGAGTCGCG GCTGCCGCCCGGCCAGCGCAGATTGGACGACGGCTCGGACCACCTCCGCATGTCACACACGTCGGGCGAGTTCCC GCCCGTCCACCACCACAGCATGCAGCACAAGCAGCTCAGCGACCTGCAGGCCGAAGAGGCCAACGGCCCCTCCGG CTCGCAGCCCTACAGCCGCACCCCCGAGCTGAGGGTCAGCCACAAGCTGGCCGAGAGGAAGCGACGGACCGAGAT GAAGGAGCTCTTTGACCAATTGCGCGATCTGATGCCTCAGGAACGCGGATCCAAGGCCTCCAAGTGGGAGATTTT GACCAAAGGTAGAGAGAGGCTGCCCGCACCAGCCACGACGGCCGGGCCCGCCACGTACCATCAAGCTGACGTGGG GAACTAGCCATCGCGGAACACCAGAGACAGAGCGAGCACATTCGGGTGCTGCAGGCGCACTACAACACGGCCCTG ACCGACAACGACATGCTCCGTCGCGAGCTGCACAGCCTGCGGATGGACGGCGCGCACCCGTCCAGCCACGCCCAG CAGGGCCCGCCGCCCCCGCCCCCGCCGCCGCAACAACAACCGCCGCCGCCACCCCAGCAGGCGCAGCAGCAGCAG GGCTCGCAACCGGGCTCGTATGCCGCCGACCCCTACGCCGGCGCCAGCCGGACCGAGCTCCCGCCGCTGCGCTCC ATCAGCAACAGTCTGCCCAACGGGCCGGACTCCATGACGGGCGTCCAGTACGAAGCCCCGAGGGTCAACGGGTAT CGGCATGAGAGATACTGA |