Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|9743
Gene name
LocationContig_730:868..1495
Strand-
Gene length (bp)627
Transcript length (bp)627
Coding sequence length (bp)627
Protein length (aa) 209

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14856 Hce2 Pathogen effector; putative necrosis-inducing factor 1.1E-11 72 184

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 39 0.5

Transmembrane Domains

Domain # Start End Length
1 21 43 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|9743
MPRAVPLVTIGQSSRQSSRQLVSAFFVLMALHLVLVTGAVVPSSAASSHCFSPPFTNATGVSWRPSPVGQRTCGQ
ATFADDTTLVPANWRRCSALYSEWAAENGSFHVVKAAAPRVATPLAASAAGSTFVPILGETDCALAVEIADASLG
PLVIGSQDLEALLFNSLKDYSRGTLLAVTGTLECDLASGGGHAPLSWKISKTATARRK*
Coding >Hirsu2|9743
ATGCCGCGAGCTGTGCCTCTCGTCACCATCGGCCAGAGCAGCCGCCAGAGCAGCCGCCAGCTCGTGTCCGCCTTC
TTCGTCCTCATGGCCCTGCACCTCGTCCTTGTCACCGGCGCTGTCGTGCCCTCGTCTGCCGCGTCTTCGCACTGC
TTTTCGCCGCCCTTTACCAACGCGACGGGCGTGTCATGGAGACCCTCGCCGGTCGGCCAGCGCACCTGCGGCCAG
GCCACGTTCGCAGACGATACGACGCTCGTGCCCGCCAACTGGCGAAGATGCTCCGCCCTCTACAGTGAATGGGCC
GCCGAGAACGGCTCGTTTCATGTCGTCAAAGCCGCCGCCCCGAGGGTAGCCACACCCCTCGCCGCCTCTGCCGCG
GGCAGCACCTTCGTGCCCATACTGGGAGAGACGGACTGCGCACTGGCCGTCGAGATCGCCGACGCCTCCCTCGGG
CCCCTCGTCATCGGCAGCCAAGACCTCGAAGCCCTCCTCTTCAACAGCCTCAAGGACTACTCCCGCGGCACCTTG
TTGGCCGTCACCGGCACGCTGGAGTGCGATCTGGCAAGCGGCGGAGGCCACGCCCCCTTGTCGTGGAAGATCTCC
AAGACAGCGACGGCGCGCCGGAAATGA
Transcript >Hirsu2|9743
ATGCCGCGAGCTGTGCCTCTCGTCACCATCGGCCAGAGCAGCCGCCAGAGCAGCCGCCAGCTCGTGTCCGCCTTC
TTCGTCCTCATGGCCCTGCACCTCGTCCTTGTCACCGGCGCTGTCGTGCCCTCGTCTGCCGCGTCTTCGCACTGC
TTTTCGCCGCCCTTTACCAACGCGACGGGCGTGTCATGGAGACCCTCGCCGGTCGGCCAGCGCACCTGCGGCCAG
GCCACGTTCGCAGACGATACGACGCTCGTGCCCGCCAACTGGCGAAGATGCTCCGCCCTCTACAGTGAATGGGCC
GCCGAGAACGGCTCGTTTCATGTCGTCAAAGCCGCCGCCCCGAGGGTAGCCACACCCCTCGCCGCCTCTGCCGCG
GGCAGCACCTTCGTGCCCATACTGGGAGAGACGGACTGCGCACTGGCCGTCGAGATCGCCGACGCCTCCCTCGGG
CCCCTCGTCATCGGCAGCCAAGACCTCGAAGCCCTCCTCTTCAACAGCCTCAAGGACTACTCCCGCGGCACCTTG
TTGGCCGTCACCGGCACGCTGGAGTGCGATCTGGCAAGCGGCGGAGGCCACGCCCCCTTGTCGTGGAAGATCTCC
AAGACAGCGACGGCGCGCCGGAAATGA
Gene >Hirsu2|9743
ATGCCGCGAGCTGTGCCTCTCGTCACCATCGGCCAGAGCAGCCGCCAGAGCAGCCGCCAGCTCGTGTCCGCCTTC
TTCGTCCTCATGGCCCTGCACCTCGTCCTTGTCACCGGCGCTGTCGTGCCCTCGTCTGCCGCGTCTTCGCACTGC
TTTTCGCCGCCCTTTACCAACGCGACGGGCGTGTCATGGAGACCCTCGCCGGTCGGCCAGCGCACCTGCGGCCAG
GCCACGTTCGCAGACGATACGACGCTCGTGCCCGCCAACTGGCGAAGATGCTCCGCCCTCTACAGTGAATGGGCC
GCCGAGAACGGCTCGTTTCATGTCGTCAAAGCCGCCGCCCCGAGGGTAGCCACACCCCTCGCCGCCTCTGCCGCG
GGCAGCACCTTCGTGCCCATACTGGGAGAGACGGACTGCGCACTGGCCGTCGAGATCGCCGACGCCTCCCTCGGG
CCCCTCGTCATCGGCAGCCAAGACCTCGAAGCCCTCCTCTTCAACAGCCTCAAGGACTACTCCCGCGGCACCTTG
TTGGCCGTCACCGGCACGCTGGAGTGCGATCTGGCAAGCGGCGGAGGCCACGCCCCCTTGTCGTGGAAGATCTCC
AAGACAGCGACGGCGCGCCGGAAATGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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