Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|9709
Gene name
LocationContig_726:1599..3079
Strand-
Gene length (bp)1480
Transcript length (bp)1179
Coding sequence length (bp)1179
Protein length (aa) 393

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12220 U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 9.4E-27 3 93
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.9E-16 106 182

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O13829|RU17_SCHPO U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp101 PE=1 SV=1 1 225 1.0E-41
sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1 5 204 7.0E-36
sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2 1 198 1.0E-33
sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2 1 198 2.0E-33
sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1 1 198 3.0E-33
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Swissprot ID Swissprot Description Start End E-value
sp|O13829|RU17_SCHPO U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp101 PE=1 SV=1 1 225 1.0E-41
sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1 5 204 7.0E-36
sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2 1 198 1.0E-33
sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2 1 198 2.0E-33
sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1 1 198 3.0E-33
sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1 1 198 4.0E-32
sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1 1 198 1.0E-31
sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila melanogaster GN=snRNP-U1-70K PE=1 SV=2 1 196 3.0E-29
sp|Q55FQ0|RU17_DICDI U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium discoideum GN=snrnp70 PE=3 SV=1 81 205 3.0E-24
sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1 SV=1 3 196 1.0E-23
sp|Q1LZH0|U1SBP_BOVIN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus GN=SNRNP35 PE=2 SV=1 94 198 4.0E-09
sp|Q9D384|U1SBP_MOUSE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus musculus GN=Snrnp35 PE=2 SV=1 94 198 7.0E-09
sp|Q5U1W5|U1SBP_RAT U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus norvegicus GN=Snrnp35 PE=2 SV=1 94 198 1.0E-08
sp|Q16560|U1SBP_HUMAN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens GN=SNRNP35 PE=1 SV=1 94 198 3.0E-08
sp|W8E7I1|RBM3_CAPHI RNA-binding protein 3 OS=Capra hircus GN=RBM3 PE=2 SV=2 104 184 1.0E-07
sp|P98179|RBM3_HUMAN RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1 104 184 2.0E-07
sp|Q925G0|RBM3_RAT RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2 104 210 3.0E-07
sp|Q4KMD3|U1SBP_DANRE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio rerio GN=snrnp35 PE=2 SV=1 94 199 4.0E-07
sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2 SV=1 104 183 5.0E-07
sp|O89086|RBM3_MOUSE RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1 104 184 7.0E-07
sp|O02008|TRA2_DROVI Transformer-2 sex-determining protein OS=Drosophila virilis GN=tra2 PE=3 SV=1 99 221 1.0E-06
sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3 104 183 2.0E-06
sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1 104 184 3.0E-06
sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1 104 184 3.0E-06
sp|Q8VY74|U1135_ARATH U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Arabidopsis thaliana GN=SNRNP35 PE=1 SV=1 78 196 3.0E-06
sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1 104 184 5.0E-06
sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1 104 184 5.0E-06
sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1 104 184 5.0E-06
sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1 104 184 5.0E-06
sp|Q4R813|RMXL2_MACFA RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1 104 183 5.0E-06
sp|P19018|TRA2_DROME Transformer-2 sex-determining protein OS=Drosophila melanogaster GN=tra2 PE=1 SV=1 100 186 6.0E-06
sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes GN=RBMXL3 PE=3 SV=1 96 183 7.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.3316 0.9153 0.0187 0.0281 0.0971 0.0016 0.0382 0.0142 0.0081 0.0001

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup4624
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|3917
Ophiocordyceps australis map64 (Brazil) OphauB2|4147
Ophiocordyceps camponoti-floridani Ophcf2|04453
Ophiocordyceps camponoti-rufipedis Ophun1|1775
Ophiocordyceps kimflemingae Ophio5|7484
Ophiocordyceps subramaniannii Hirsu2|9709 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|9709
MTDKLPPNLLALFAPRPPLRWVEPTDHAPEKRRTKPVSGVGAYLGELQKYKETDTHTPTESWLEARDRKKEEKQT
AIKKLLEEGPKKFQPAEDPNIRGDALRTMIVARLSYEADERDLERHFHRFGPVERIRIVSDTHEHEKPNKKKKPH
RGYAFVVFERESDMQAAVRGCDGDRIKGRAIKTDVERGRTVVGWKPRRLGGGLGGRGYTRIIPSRPVGPRGFGDG
FRGGYRGFDGGRPRGGRGGGRGGGFRGDFGGPRGDRGFGPPSGAPSGPGFDRRNGDRGFSGPGHDSRGHGRYDDR
HGGYRDGGRFGDRDGGRRTGSNMEPIGRRDGGFRDRDRDRDRDRDRDRDRDRDRDRDRGRDRRDYDRPRDDDSRK
RAYEGGGYDDSRKMPRY*
Coding >Hirsu2|9709
ATGACGGACAAGCTTCCTCCGAACCTGCTCGCGCTCTTCGCGCCGCGGCCTCCCCTCCGCTGGGTCGAGCCCACC
GACCACGCGCCCGAGAAGCGGCGAACCAAGCCCGTGAGCGGGGTCGGCGCCTACCTCGGAGAGCTGCAGAAGTAC
AAGGAGACGGACACGCACACTCCGACCGAGAGCTGGCTGGAGGCGCGCGACCGGAAGAAGGAAGAGAAGCAGACG
GCCATCAAGAAGCTCCTCGAGGAGGGCCCCAAGAAGTTTCAACCGGCCGAGGATCCCAACATTCGAGGCGATGCG
CTCAGGACCATGATCGTGGCCCGCCTGAGCTATGAGGCCGACGAACGTGACTTGGAGCGACATTTCCACCGTTTC
GGCCCGGTCGAGCGCATCCGCATCGTGTCAGATACCCATGAACACGAGAAACCCAACAAGAAGAAGAAGCCTCAC
AGAGGTTACGCTTTCGTCGTGTTCGAGCGGGAGTCAGACATGCAAGCCGCTGTCAGAGGTTGTGACGGGGATCGA
ATCAAAGGCAGAGCTATCAAGACAGACGTCGAACGGGGCCGCACCGTCGTCGGCTGGAAGCCCCGAAGACTCGGT
GGCGGACTCGGCGGCCGAGGCTACACCAGAATCATCCCGTCGCGACCCGTCGGGCCCCGTGGCTTCGGCGACGGC
TTCAGGGGGGGTTACCGAGGATTCGATGGTGGACGCCCTCGCGGCGGCCGAGGCGGCGGCCGGGGCGGAGGCTTC
AGGGGTGATTTCGGCGGCCCTCGAGGCGACAGAGGCTTCGGACCGCCCAGCGGCGCGCCCTCCGGGCCAGGCTTC
GACAGGCGAAACGGCGACCGTGGCTTCTCTGGTCCTGGCCACGATTCCCGAGGACACGGTCGTTACGACGACAGA
CACGGTGGCTACCGCGATGGCGGTCGGTTCGGCGATCGTGACGGTGGGCGCCGGACAGGAAGCAACATGGAGCCG
ATTGGCCGCCGAGACGGTGGGTTTCGCGACCGCGACCGTGACCGCGACCGTGACCGCGACCGCGACCGCGACCGC
GATCGCGACAGGGACAGGGACAGGGGACGGGATCGACGGGACTACGATCGGCCGCGTGATGACGACAGCCGGAAG
CGAGCGTACGAGGGAGGCGGCTACGACGATTCACGGAAAATGCCCCGTTACTAA
Transcript >Hirsu2|9709
ATGACGGACAAGCTTCCTCCGAACCTGCTCGCGCTCTTCGCGCCGCGGCCTCCCCTCCGCTGGGTCGAGCCCACC
GACCACGCGCCCGAGAAGCGGCGAACCAAGCCCGTGAGCGGGGTCGGCGCCTACCTCGGAGAGCTGCAGAAGTAC
AAGGAGACGGACACGCACACTCCGACCGAGAGCTGGCTGGAGGCGCGCGACCGGAAGAAGGAAGAGAAGCAGACG
GCCATCAAGAAGCTCCTCGAGGAGGGCCCCAAGAAGTTTCAACCGGCCGAGGATCCCAACATTCGAGGCGATGCG
CTCAGGACCATGATCGTGGCCCGCCTGAGCTATGAGGCCGACGAACGTGACTTGGAGCGACATTTCCACCGTTTC
GGCCCGGTCGAGCGCATCCGCATCGTGTCAGATACCCATGAACACGAGAAACCCAACAAGAAGAAGAAGCCTCAC
AGAGGTTACGCTTTCGTCGTGTTCGAGCGGGAGTCAGACATGCAAGCCGCTGTCAGAGGTTGTGACGGGGATCGA
ATCAAAGGCAGAGCTATCAAGACAGACGTCGAACGGGGCCGCACCGTCGTCGGCTGGAAGCCCCGAAGACTCGGT
GGCGGACTCGGCGGCCGAGGCTACACCAGAATCATCCCGTCGCGACCCGTCGGGCCCCGTGGCTTCGGCGACGGC
TTCAGGGGGGGTTACCGAGGATTCGATGGTGGACGCCCTCGCGGCGGCCGAGGCGGCGGCCGGGGCGGAGGCTTC
AGGGGTGATTTCGGCGGCCCTCGAGGCGACAGAGGCTTCGGACCGCCCAGCGGCGCGCCCTCCGGGCCAGGCTTC
GACAGGCGAAACGGCGACCGTGGCTTCTCTGGTCCTGGCCACGATTCCCGAGGACACGGTCGTTACGACGACAGA
CACGGTGGCTACCGCGATGGCGGTCGGTTCGGCGATCGTGACGGTGGGCGCCGGACAGGAAGCAACATGGAGCCG
ATTGGCCGCCGAGACGGTGGGTTTCGCGACCGCGACCGTGACCGCGACCGTGACCGCGACCGCGACCGCGACCGC
GATCGCGACAGGGACAGGGACAGGGGACGGGATCGACGGGACTACGATCGGCCGCGTGATGACGACAGCCGGAAG
CGAGCGTACGAGGGAGGCGGCTACGACGATTCACGGAAAATGCCCCGTTACTAA
Gene >Hirsu2|9709
ATGACGGACAAGCTTCCTCCGAACCTGCTCGCGCTCTTCGCGCCGCGGCCTCCCCTCCGCTGGGTCGAGCCCACC
GACCACGCGCCCGAGAAGCGGCGAACCAAGCCCGTGAGCGGGGTCGGCGCCTACCTCGGAGAGCTGCAGAAGTAC
AAGGAGACGGACACGCACACTCCGACCGAGAGCTGGCTGGAGGCGCGCGACCGGAAGAAGGAAGAGAAGCAGACG
GCCATCAAGAAGCTCCTCGAGGAGGGCCCCAAGAAGTGTATGGAAGAGACGCCCTTCGCACGGTCACGCGAGCTG
CGAACTGACTATCGATGCCCAGTTCAACCGGCCGAGGATCCCAACATTCGAGGCGATGCGCTCAGGACCATGATC
GTGGCCCGCCTGAGCTATGAGGCCGACGAACGTGACTTGGAGCGACATTTCCACCGTTTCGGCCCGGTCGAGCGC
GTCGGTCTTCCCGCGTCACGTCCGCCTTCCGGTGCCGCCGGCTGACATTCATACCAGATCCGCATCGTGTCAGAT
ACCCATGAACACGAGAAACCCAACAAGAAGAAGAAGCCTCACAGAGGTTACGCTTTCGTCGTGTTCGAGCGGGAG
TCAGACATGCAAGGTAACTAAGTTTCTCCTCATTGGAATTTTTCGGCGCCGGCTTCGTTGCCTGCCATGACGCAT
ACCCGCCACTTTGTTGTCCAGATTTTGGAGGATGCATGATCAGATGTCCAACATCTTCCAACTTGGCCCATCTCC
TACCAAACACTGCTGACACACGTGCCGGCTGGCACCTCCACAATTAGCCGCTGTCAGAGGTTGTGACGGGGATCG
AATCAAAGGCAGAGCTATCAAGACAGACGTCGAACGGGGCCGCACCGTCGTCGGCTGGAAGCCCCGAAGACTCGG
TGGCGGACTCGGCGGCCGAGGCTACACCAGAATCATCCCGTCGCGACCCGTCGGGCCCCGTGGCTTCGGCGACGG
CTTCAGGGGGGGTTACCGAGGATTCGATGGTGGACGCCCTCGCGGCGGCCGAGGCGGCGGCCGGGGCGGAGGCTT
CAGGGGTGATTTCGGCGGCCCTCGAGGCGACAGAGGCTTCGGACCGCCCAGCGGCGCGCCCTCCGGGCCAGGCTT
CGACAGGCGAAACGGCGACCGTGGCTTCTCTGGTCCTGGCCACGATTCCCGAGGACACGGTCGTTACGACGACAG
ACACGGTGGCTACCGCGATGGCGGTCGGTTCGGCGATCGTGACGGTGGGCGCCGGACAGGAAGCAACATGGAGCC
GATTGGCCGCCGAGACGGTGGGTTTCGCGACCGCGACCGTGACCGCGACCGTGACCGCGACCGCGACCGCGACCG
CGATCGCGACAGGGACAGGGACAGGGGACGGGATCGACGGGACTACGATCGGCCGCGTGATGACGACAGCCGGAA
GCGAGCGTACGAGGGAGGCGGCTACGACGATTCACGGAAAATGCCCCGTTACTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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