© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9631 |
| Gene name | |
| Location | Contig_711:3243..3938 |
| Strand | + |
| Gene length (bp) | 695 |
| Transcript length (bp) | 630 |
| Coding sequence length (bp) | 630 |
| Protein length (aa) | 210 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05064 | Nsp1_C | Nsp1-like C-terminal region | 3.2E-33 | 1 | 89 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|G0SBQ3|NSP1_CHATD | Nucleoporin NSP1 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=NSP1 PE=1 SV=1 | 1 | 207 | 3.0E-87 |
| sp|P37198|NUP62_HUMAN | Nuclear pore glycoprotein p62 OS=Homo sapiens GN=NUP62 PE=1 SV=3 | 1 | 176 | 4.0E-28 |
| sp|P17955|NUP62_RAT | Nuclear pore glycoprotein p62 OS=Rattus norvegicus GN=Nup62 PE=1 SV=1 | 1 | 181 | 2.0E-27 |
| sp|Q63850|NUP62_MOUSE | Nuclear pore glycoprotein p62 OS=Mus musculus GN=Nup62 PE=1 SV=2 | 1 | 176 | 2.0E-27 |
| sp|Q10168|NSP1_SCHPO | Nucleoporin nsp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nsp1 PE=1 SV=1 | 1 | 166 | 4.0E-25 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|G0SBQ3|NSP1_CHATD | Nucleoporin NSP1 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=NSP1 PE=1 SV=1 | 1 | 207 | 3.0E-87 |
| sp|P37198|NUP62_HUMAN | Nuclear pore glycoprotein p62 OS=Homo sapiens GN=NUP62 PE=1 SV=3 | 1 | 176 | 4.0E-28 |
| sp|P17955|NUP62_RAT | Nuclear pore glycoprotein p62 OS=Rattus norvegicus GN=Nup62 PE=1 SV=1 | 1 | 181 | 2.0E-27 |
| sp|Q63850|NUP62_MOUSE | Nuclear pore glycoprotein p62 OS=Mus musculus GN=Nup62 PE=1 SV=2 | 1 | 176 | 2.0E-27 |
| sp|Q10168|NSP1_SCHPO | Nucleoporin nsp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nsp1 PE=1 SV=1 | 1 | 166 | 4.0E-25 |
| sp|P14907|NSP1_YEAST | Nucleoporin NSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSP1 PE=1 SV=1 | 1 | 181 | 2.0E-22 |
| sp|Q8L7F7|NUP62_ARATH | Nuclear pore complex protein NUP62 OS=Arabidopsis thaliana GN=NUP62 PE=1 SV=1 | 1 | 184 | 1.0E-16 |
| sp|Q9H1M0|N62CL_HUMAN | Nucleoporin-62 C-terminal-like protein OS=Homo sapiens GN=NUP62CL PE=1 SV=3 | 1 | 84 | 5.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9631 MEDIVTRWASDLSKYQKEFKEQATIVSTWDRNLVDNGEKIQKLYLDTFEAERASHEIERQLVAVESQQDELEAWL DRYESEVQDMFVKQIGPGEQLAGPDQERERTYKLAEKLTQQLDEKSRDLSKMVKEINEISGTLSKGAKAEDPLSQ IVRVLNGHLTQLQWIDANAAALQAKVAAAQKSSGALNSHYAGADTDAAESFYRSYMGRR* |
| Coding | >Hirsu2|9631 ATGGAGGATATCGTCACGCGTTGGGCCTCGGATCTATCCAAGTACCAGAAAGAATTCAAAGAGCAGGCCACCATC GTGTCGACTTGGGATAGAAACCTGGTCGACAACGGGGAGAAGATCCAGAAGCTGTACCTGGACACCTTCGAGGCC GAGCGAGCCAGCCACGAGATCGAGCGACAGCTGGTGGCGGTGGAGAGCCAGCAGGACGAGCTCGAAGCGTGGCTG GACCGGTACGAATCCGAGGTGCAGGACATGTTCGTCAAGCAGATCGGCCCCGGGGAGCAGCTGGCCGGGCCGGAC CAGGAGCGAGAGCGGACGTACAAGCTCGCAGAGAAGCTGACGCAGCAGCTGGACGAGAAGTCGCGAGACCTGTCC AAGATGGTCAAGGAGATCAACGAGATCTCGGGCACCCTGAGCAAGGGGGCCAAGGCCGAGGATCCGCTGAGCCAG ATCGTGCGCGTCCTCAACGGCCACCTCACGCAGCTGCAGTGGATCGATGCCAACGCGGCGGCGCTGCAGGCCAAG GTGGCTGCGGCGCAGAAGTCGAGCGGCGCGCTGAACAGCCACTACGCCGGGGCGGACACTGACGCGGCAGAGAGC TTCTACCGCTCGTACATGGGGCGACGGTGA |
| Transcript | >Hirsu2|9631 ATGGAGGATATCGTCACGCGTTGGGCCTCGGATCTATCCAAGTACCAGAAAGAATTCAAAGAGCAGGCCACCATC GTGTCGACTTGGGATAGAAACCTGGTCGACAACGGGGAGAAGATCCAGAAGCTGTACCTGGACACCTTCGAGGCC GAGCGAGCCAGCCACGAGATCGAGCGACAGCTGGTGGCGGTGGAGAGCCAGCAGGACGAGCTCGAAGCGTGGCTG GACCGGTACGAATCCGAGGTGCAGGACATGTTCGTCAAGCAGATCGGCCCCGGGGAGCAGCTGGCCGGGCCGGAC CAGGAGCGAGAGCGGACGTACAAGCTCGCAGAGAAGCTGACGCAGCAGCTGGACGAGAAGTCGCGAGACCTGTCC AAGATGGTCAAGGAGATCAACGAGATCTCGGGCACCCTGAGCAAGGGGGCCAAGGCCGAGGATCCGCTGAGCCAG ATCGTGCGCGTCCTCAACGGCCACCTCACGCAGCTGCAGTGGATCGATGCCAACGCGGCGGCGCTGCAGGCCAAG GTGGCTGCGGCGCAGAAGTCGAGCGGCGCGCTGAACAGCCACTACGCCGGGGCGGACACTGACGCGGCAGAGAGC TTCTACCGCTCGTACATGGGGCGACGGTGA |
| Gene | >Hirsu2|9631 ATGGAGGATATCGTCACGCGTTGGGCCTCGGATCTATCCAAGTACCAGAAAGAATTCAAAGAGCAGGCCACCATC GTGTCGACTTGGGATAGAAACCTGGTCGACAACGGGGAGAAGATCCAGAAGCTGTACCTGGACACCTTCGAGGCC GAGCGAGCCAGCCACGAGATCGAGCGACAGCTGGTGGCGGTGGAGAGCCAGCAGGACGAGCTCGAAGCGTGGCTG GACCGGTACGAATCCGAGGTGCAGGACATGTTCGTCAAGCAGATCGGCCCCGGGGAGCAGCTGGCCGGGCCGGAC CAGGAGCGAGAGCGGACGTACAAGCTCGCAGAGAAGCTGACGCAGCAGCTGGACGAGAAGTCGCGAGACCTGTCC AAGATGGTCAAGGAGATCAACGAGATCTCGGGCACCCTGAGCAAGGGGGCCAAGGCCGAGGATCCGGTAAGCATG AGAGATCCCCCCAGTCCCCCAGCCCGACCCGTTGGGACGCTAACTCGGCGACGCAGCTGAGCCAGATCGTGCGCG TCCTCAACGGCCACCTCACGCAGCTGCAGTGGATCGATGCCAACGCGGCGGCGCTGCAGGCCAAGGTGGCTGCGG CGCAGAAGTCGAGCGGCGCGCTGAACAGCCACTACGCCGGGGCGGACACTGACGCGGCAGAGAGCTTCTACCGCT CGTACATGGGGCGACGGTGA |