© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9620 |
| Gene name | |
| Location | Contig_71:25114..25846 |
| Strand | + |
| Gene length (bp) | 732 |
| Transcript length (bp) | 732 |
| Coding sequence length (bp) | 732 |
| Protein length (aa) | 244 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13649 | Methyltransf_25 | Methyltransferase domain | 4.6E-12 | 20 | 123 |
| PF08241 | Methyltransf_11 | Methyltransferase domain | 1.7E-08 | 21 | 126 |
| PF13847 | Methyltransf_31 | Methyltransferase domain | 2.1E-07 | 16 | 131 |
| PF13489 | Methyltransf_23 | Methyltransferase domain | 1.3E-06 | 14 | 162 |
| PF01209 | Ubie_methyltran | ubiE/COQ5 methyltransferase family | 2.1E-04 | 17 | 128 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008168 | methyltransferase activity | Yes |
| GO:0016740 | transferase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.7047 | 0.7085 | 0.1803 | 0.0238 | 0.073 | 0.0387 | 0.0348 | 0.0762 | 0.0972 | 0.0029 |
| Orthofinder run ID | 4 |
| Orthogroup | 1039 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9620 MELRNVQMVLRNLLSPNSAVLEFACGTGFYTTHLLDWGAKSLTAMDNSPTMLGSASARLLNHGLSGCARLVQGDG TTPQSLAPDGKLECFDLAFGAWFLNYARSKAELTAMFKTISLNLKPGGVFVGIVPHPTDDLKLRAAAYRNPRFRN TFPRNEYTEELESGDGWGLQVSLDDDGVRFMTWHMKQRVYEEAARLGGMKGRLEWRREQLFKEEWGERFGLSREE LQAREENPHHGILVAYKD* |
| Coding | >Hirsu2|9620 ATGGAGTTGCGCAACGTTCAAATGGTCCTGAGGAATCTACTTTCTCCTAACTCCGCCGTCCTCGAGTTCGCCTGC GGGACGGGCTTCTACACCACGCACCTTCTAGACTGGGGCGCCAAGTCTCTCACAGCCATGGATAACTCCCCTACC ATGCTCGGGAGTGCCTCGGCTCGACTGCTGAATCATGGGCTTTCTGGCTGTGCACGACTGGTCCAGGGCGACGGC ACCACACCGCAGTCGTTGGCCCCCGATGGAAAGCTGGAATGTTTCGACCTCGCCTTTGGCGCCTGGTTCCTCAAC TACGCGCGGAGCAAAGCCGAGCTGACAGCCATGTTCAAGACAATCTCGCTGAACCTCAAACCGGGCGGCGTCTTC GTCGGCATAGTGCCGCATCCGACAGACGATCTGAAGCTCCGCGCGGCGGCGTACCGTAACCCGCGCTTCAGGAAT ACCTTTCCGCGGAACGAGTATACCGAAGAGCTCGAGTCGGGTGACGGATGGGGCCTGCAGGTCTCTCTGGACGAC GACGGCGTGCGCTTCATGACGTGGCACATGAAGCAGCGCGTCTACGAGGAGGCGGCCCGGCTCGGGGGCATGAAA GGGAGGCTGGAGTGGAGGCGCGAGCAGTTGTTCAAGGAGGAATGGGGGGAGAGATTCGGTCTAAGTCGCGAAGAG CTGCAGGCGCGGGAAGAAAACCCCCATCATGGCATACTCGTTGCATATAAAGATTAG |
| Transcript | >Hirsu2|9620 ATGGAGTTGCGCAACGTTCAAATGGTCCTGAGGAATCTACTTTCTCCTAACTCCGCCGTCCTCGAGTTCGCCTGC GGGACGGGCTTCTACACCACGCACCTTCTAGACTGGGGCGCCAAGTCTCTCACAGCCATGGATAACTCCCCTACC ATGCTCGGGAGTGCCTCGGCTCGACTGCTGAATCATGGGCTTTCTGGCTGTGCACGACTGGTCCAGGGCGACGGC ACCACACCGCAGTCGTTGGCCCCCGATGGAAAGCTGGAATGTTTCGACCTCGCCTTTGGCGCCTGGTTCCTCAAC TACGCGCGGAGCAAAGCCGAGCTGACAGCCATGTTCAAGACAATCTCGCTGAACCTCAAACCGGGCGGCGTCTTC GTCGGCATAGTGCCGCATCCGACAGACGATCTGAAGCTCCGCGCGGCGGCGTACCGTAACCCGCGCTTCAGGAAT ACCTTTCCGCGGAACGAGTATACCGAAGAGCTCGAGTCGGGTGACGGATGGGGCCTGCAGGTCTCTCTGGACGAC GACGGCGTGCGCTTCATGACGTGGCACATGAAGCAGCGCGTCTACGAGGAGGCGGCCCGGCTCGGGGGCATGAAA GGGAGGCTGGAGTGGAGGCGCGAGCAGTTGTTCAAGGAGGAATGGGGGGAGAGATTCGGTCTAAGTCGCGAAGAG CTGCAGGCGCGGGAAGAAAACCCCCATCATGGCATACTCGTTGCATATAAAGATTAG |
| Gene | >Hirsu2|9620 ATGGAGTTGCGCAACGTTCAAATGGTCCTGAGGAATCTACTTTCTCCTAACTCCGCCGTCCTCGAGTTCGCCTGC GGGACGGGCTTCTACACCACGCACCTTCTAGACTGGGGCGCCAAGTCTCTCACAGCCATGGATAACTCCCCTACC ATGCTCGGGAGTGCCTCGGCTCGACTGCTGAATCATGGGCTTTCTGGCTGTGCACGACTGGTCCAGGGCGACGGC ACCACACCGCAGTCGTTGGCCCCCGATGGAAAGCTGGAATGTTTCGACCTCGCCTTTGGCGCCTGGTTCCTCAAC TACGCGCGGAGCAAAGCCGAGCTGACAGCCATGTTCAAGACAATCTCGCTGAACCTCAAACCGGGCGGCGTCTTC GTCGGCATAGTGCCGCATCCGACAGACGATCTGAAGCTCCGCGCGGCGGCGTACCGTAACCCGCGCTTCAGGAAT ACCTTTCCGCGGAACGAGTATACCGAAGAGCTCGAGTCGGGTGACGGATGGGGCCTGCAGGTCTCTCTGGACGAC GACGGCGTGCGCTTCATGACGTGGCACATGAAGCAGCGCGTCTACGAGGAGGCGGCCCGGCTCGGGGGCATGAAA GGGAGGCTGGAGTGGAGGCGCGAGCAGTTGTTCAAGGAGGAATGGGGGGAGAGATTCGGTCTAAGTCGCGAAGAG CTGCAGGCGCGGGAAGAAAACCCCCATCATGGCATACTCGTTGCATATAAAGATTAG |