© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|960 |
| Gene name | |
| Location | Contig_12:51198..52598 |
| Strand | + |
| Gene length (bp) | 1400 |
| Transcript length (bp) | 1104 |
| Coding sequence length (bp) | 1104 |
| Protein length (aa) | 368 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01522 | Polysacc_deac_1 | Polysaccharide deacetylase | 1.5E-30 | 149 | 271 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D4AM78|CDA_ARTBC | Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 | 109 | 357 | 8.0E-43 |
| sp|D4B5F9|PGDA_ARTBC | Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 | 134 | 357 | 4.0E-40 |
| sp|Q06702|CDA1_YEAST | Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 | 149 | 350 | 3.0E-17 |
| sp|P83513|XY11A_PSEXY | Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 | 149 | 254 | 5.0E-16 |
| sp|P50325|CDA_AMYRO | Chitin deacetylase OS=Amylomyces rouxii PE=1 SV=1 | 151 | 302 | 1.0E-15 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D4AM78|CDA_ARTBC | Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 | 109 | 357 | 8.0E-43 |
| sp|D4B5F9|PGDA_ARTBC | Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 | 134 | 357 | 4.0E-40 |
| sp|Q06702|CDA1_YEAST | Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 | 149 | 350 | 3.0E-17 |
| sp|P83513|XY11A_PSEXY | Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 | 149 | 254 | 5.0E-16 |
| sp|P50325|CDA_AMYRO | Chitin deacetylase OS=Amylomyces rouxii PE=1 SV=1 | 151 | 302 | 1.0E-15 |
| sp|Q8DP63|PGDA_STRR6 | Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 | 149 | 256 | 1.0E-15 |
| sp|O34798|PDAC_BACSU | Peptidoglycan-N-acetylmuramic acid deacetylase PdaC OS=Bacillus subtilis (strain 168) GN=pdaC PE=1 SV=1 | 149 | 347 | 3.0E-14 |
| sp|Q06703|CDA2_YEAST | Chitin deacetylase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA2 PE=1 SV=1 | 140 | 349 | 3.0E-13 |
| sp|P54865|XYND_CELFI | Bifunctional xylanase/deacetylase OS=Cellulomonas fimi GN=xynD PE=1 SV=1 | 143 | 293 | 6.0E-13 |
| sp|P50355|NODB_RHISN | Chitooligosaccharide deacetylase OS=Rhizobium sp. (strain NGR234) GN=nodB PE=3 SV=2 | 148 | 239 | 1.0E-12 |
| sp|P50354|NODB_RHIGA | Chitooligosaccharide deacetylase OS=Rhizobium galegae GN=nodB PE=3 SV=1 | 149 | 278 | 2.0E-12 |
| sp|Q04729|YFUM2_GEOSE | Uncharacterized 30.6 kDa protein in fumA 3'region OS=Geobacillus stearothermophilus PE=3 SV=1 | 149 | 277 | 8.0E-12 |
| sp|P02963|NODB_RHIME | Chitooligosaccharide deacetylase OS=Rhizobium meliloti (strain 1021) GN=nodB PE=3 SV=3 | 148 | 254 | 1.0E-11 |
| sp|Q52845|NODB_RHILO | Chitooligosaccharide deacetylase OS=Rhizobium loti (strain MAFF303099) GN=nodB PE=3 SV=2 | 148 | 256 | 2.0E-10 |
| sp|P04675|NODB_BRASP | Chitooligosaccharide deacetylase OS=Bradyrhizobium sp. (strain ANU 289) GN=nodB PE=3 SV=2 | 148 | 278 | 3.0E-10 |
| sp|P50352|NODB_BRAEL | Chitooligosaccharide deacetylase OS=Bradyrhizobium elkanii GN=nodB PE=3 SV=1 | 148 | 278 | 5.0E-10 |
| sp|O34928|PDAA_BACSU | Peptidoglycan-N-acetylmuramic acid deacetylase PdaA OS=Bacillus subtilis (strain 168) GN=pdaA PE=1 SV=1 | 149 | 277 | 4.0E-09 |
| sp|P82476|CDA_CRYNH | Chitin deacetylase OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CNAG_01239 PE=1 SV=3 | 150 | 323 | 4.0E-09 |
| sp|P04676|NODB_RHILT | Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. trifolii GN=nodB PE=3 SV=1 | 148 | 239 | 5.0E-09 |
| sp|Q07740|NODB_AZOC5 | Chitooligosaccharide deacetylase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=nodB PE=3 SV=2 | 137 | 303 | 6.0E-09 |
| sp|P0CP76|CDA_CRYNJ | Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MP 84 PE=2 SV=1 | 150 | 261 | 1.0E-08 |
| sp|P04339|NODB_RHILV | Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. viciae GN=nodB PE=3 SV=1 | 149 | 232 | 1.0E-08 |
| sp|P0CP77|CDA_CRYNB | Chitin deacetylase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=MP 84 PE=3 SV=1 | 150 | 261 | 2.0E-08 |
| sp|P24150|NODB_RHILP | Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. phaseoli GN=nodB PE=3 SV=1 | 151 | 327 | 7.0E-08 |
| sp|P50850|YLXY_BACSU | Uncharacterized protein YlxY OS=Bacillus subtilis (strain 168) GN=ylxY PE=3 SV=2 | 160 | 291 | 3.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|960 MLIQRHLRLVGLAAVAECVAAGARLRPERWYPAEVGRRPELSAAPVLRGGASDADAGFSSVAKRQPAPAARCGVK FGAACQKGECCSKEGWCGQGYLYCSSPACQLDYSDSCDGNIRPQGRDTTNVPRPHRGSVPYGQAIYHCEALGGVA LTFDDGPFVYTEYLLDLLASYHVKATFFITGRNLGKGAINDPAKPWPGLIRRMARDGHQVASHTWSHQRLTLLGR DQVRNQVIYNEVALADILGFFPTYIRPPYSASDGRVDGWLAELGYHVTYFNLDTEGYLHDSPALIQQSKQIWDDA VAGRDPGASRWLQIEHDIVYQSVYNLTEHVLRSLARTGLRAVTVGECLGDPPENWYRRLGPPTPGPP* |
| Coding | >Hirsu2|960 ATGTTGATTCAGCGGCATCTGCGCCTCGTGGGGCTGGCTGCCGTCGCGGAGTGCGTGGCCGCCGGGGCACGACTG CGTCCCGAGAGGTGGTACCCCGCCGAGGTCGGCCGCCGGCCGGAGCTTTCTGCCGCGCCGGTGCTTCGGGGTGGG GCCTCCGATGCCGATGCGGGTTTTTCGTCCGTGGCAAAGCGGCAACCTGCCCCGGCGGCCCGGTGTGGAGTTAAG TTTGGGGCTGCGTGCCAGAAGGGAGAGTGTTGCTCCAAAGAAGGGTGGTGCGGCCAAGGATATCTGTACTGCTCC TCTCCAGCCTGTCAGCTCGACTACAGCGACAGCTGCGATGGCAACATCCGTCCCCAGGGACGAGACACTACAAAC GTGCCGCGTCCGCACCGGGGCTCCGTCCCGTACGGCCAGGCCATCTATCACTGCGAGGCCCTCGGCGGCGTCGCC CTCACGTTCGATGACGGGCCCTTCGTCTATACGGAATACCTCCTCGACTTGCTTGCTTCGTACCACGTCAAGGCG ACCTTCTTCATCACCGGCCGAAACCTGGGCAAGGGCGCCATCAACGACCCGGCCAAGCCGTGGCCGGGCCTGATC CGGCGCATGGCCCGGGACGGCCACCAGGTGGCGAGCCACACGTGGTCGCACCAGCGGCTGACGCTGCTCGGGCGC GACCAGGTCCGCAACCAGGTCATCTACAACGAGGTGGCCCTGGCCGACATCCTCGGCTTCTTCCCGACCTACATC CGGCCGCCCTACTCGGCCAGCGACGGCCGAGTGGACGGCTGGCTGGCCGAGCTGGGCTACCACGTCACCTACTTC AACCTCGACACCGAGGGCTACCTGCACGACAGCCCGGCCCTGATCCAGCAGTCGAAGCAGATCTGGGACGACGCG GTCGCCGGCCGCGACCCCGGGGCCAGCCGGTGGCTGCAGATCGAGCACGACATCGTCTATCAGTCCGTCTACAAC CTGACCGAGCACGTGCTGCGCTCGCTCGCCCGGACCGGCCTCCGCGCCGTCACGGTGGGCGAGTGTCTCGGCGAC CCGCCCGAAAACTGGTATCGCCGGCTCGGACCTCCAACGCCGGGGCCCCCCTGA |
| Transcript | >Hirsu2|960 ATGTTGATTCAGCGGCATCTGCGCCTCGTGGGGCTGGCTGCCGTCGCGGAGTGCGTGGCCGCCGGGGCACGACTG CGTCCCGAGAGGTGGTACCCCGCCGAGGTCGGCCGCCGGCCGGAGCTTTCTGCCGCGCCGGTGCTTCGGGGTGGG GCCTCCGATGCCGATGCGGGTTTTTCGTCCGTGGCAAAGCGGCAACCTGCCCCGGCGGCCCGGTGTGGAGTTAAG TTTGGGGCTGCGTGCCAGAAGGGAGAGTGTTGCTCCAAAGAAGGGTGGTGCGGCCAAGGATATCTGTACTGCTCC TCTCCAGCCTGTCAGCTCGACTACAGCGACAGCTGCGATGGCAACATCCGTCCCCAGGGACGAGACACTACAAAC GTGCCGCGTCCGCACCGGGGCTCCGTCCCGTACGGCCAGGCCATCTATCACTGCGAGGCCCTCGGCGGCGTCGCC CTCACGTTCGATGACGGGCCCTTCGTCTATACGGAATACCTCCTCGACTTGCTTGCTTCGTACCACGTCAAGGCG ACCTTCTTCATCACCGGCCGAAACCTGGGCAAGGGCGCCATCAACGACCCGGCCAAGCCGTGGCCGGGCCTGATC CGGCGCATGGCCCGGGACGGCCACCAGGTGGCGAGCCACACGTGGTCGCACCAGCGGCTGACGCTGCTCGGGCGC GACCAGGTCCGCAACCAGGTCATCTACAACGAGGTGGCCCTGGCCGACATCCTCGGCTTCTTCCCGACCTACATC CGGCCGCCCTACTCGGCCAGCGACGGCCGAGTGGACGGCTGGCTGGCCGAGCTGGGCTACCACGTCACCTACTTC AACCTCGACACCGAGGGCTACCTGCACGACAGCCCGGCCCTGATCCAGCAGTCGAAGCAGATCTGGGACGACGCG GTCGCCGGCCGCGACCCCGGGGCCAGCCGGTGGCTGCAGATCGAGCACGACATCGTCTATCAGTCCGTCTACAAC CTGACCGAGCACGTGCTGCGCTCGCTCGCCCGGACCGGCCTCCGCGCCGTCACGGTGGGCGAGTGTCTCGGCGAC CCGCCCGAAAACTGGTATCGCCGGCTCGGACCTCCAACGCCGGGGCCCCCCTGA |
| Gene | >Hirsu2|960 ATGTTGATTCAGCGGCATCTGCGCCTCGTGGGGCTGGCTGCCGTCGCGGAGTGCGTGGCCGCCGGGGCACGACTG CGTCCCGAGAGGTGGTACCCCGCCGAGGTCGGCCGCCGGCCGGAGCTTTCTGCCGCGCCGGTGCTTCGGGGTGGG GCCTCCGATGCCGATGCGGGTTTTTCGTCCGTGGCAAAGCGGCAACCTGCCCCGGCGGCCCGGTGTGGAGTTAAG TTTGGGGCTGCGTGCCAGAAGGGAGAGTGTTGCTCCAAAGAAGGGTGAGACTTTGCTCCCCCTATTCTGTGTTTT TCGCTTTCTGTTTTTCTCCGGCTTTTTGGTGAATGGCAATGTAACGACGTGGCACACACAGGTGGTGCGGCCAAG GATATCTGTACTGCTCCTCTCCAGCCTGTCAGCTCGACTACAGCGACAGCTGCGATGGCAACATCCGTCCCCAGG GACGAGACACTACAAACGTGCCGCGTCCGCACCGGGGCTCCGTCCCGTACGGCCAGGCCATCTATCACTGCGAGG CCCTCGGCGGCGTCGCCCTCACGTTCGATGACGGGCCCTTCGTCTATACGGAATACCTCCTCGACTTGCTTGCTG TACGTCACTCCCCCCTCCCAGACACGTCTGCGATTCGGTGTCTCCCGGGCCGTCTGCGCTCTTGAGGATAAGCCG AGATAGCGCCGGCTCGTCCGTCAAGACGATGGAGAGAGCAGAGCCAAGATGGAGGAGAAGAGAATGTTGACAAAG GAGCACGAAAACAACCCCCGCCCCCTTTTCTCTCTCCCGCGCCGAGCCCACAGTCGTACCACGTCAAGGCGACCT TCTTCATCACCGGCCGAAACCTGGGCAAGGGCGCCATCAACGACCCGGCCAAGCCGTGGCCGGGCCTGATCCGGC GCATGGCCCGGGACGGCCACCAGGTGGCGAGCCACACGTGGTCGCACCAGCGGCTGACGCTGCTCGGGCGCGACC AGGTCCGCAACCAGGTCATCTACAACGAGGTGGCCCTGGCCGACATCCTCGGCTTCTTCCCGACCTACATCCGGC CGCCCTACTCGGCCAGCGACGGCCGAGTGGACGGCTGGCTGGCCGAGCTGGGCTACCACGTCACCTACTTCAACC TCGACACCGAGGGCTACCTGCACGACAGCCCGGCCCTGATCCAGCAGTCGAAGCAGATCTGGGACGACGCGGTCG CCGGCCGCGACCCCGGGGCCAGCCGGTGGCTGCAGATCGAGCACGACATCGTCTATCAGTCCGTCTACAACCTGA CCGAGCACGTGCTGCGCTCGCTCGCCCGGACCGGCCTCCGCGCCGTCACGGTGGGCGAGTGTCTCGGCGACCCGC CCGAAAACTGGTATCGCCGGCTCGGACCTCCAACGCCGGGGCCCCCCTGA |