© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9508 |
| Gene name | |
| Location | Contig_698:6361..7617 |
| Strand | - |
| Gene length (bp) | 1256 |
| Transcript length (bp) | 1050 |
| Coding sequence length (bp) | 1050 |
| Protein length (aa) | 350 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 1.2E-11 | 7 | 153 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6RVV4|TIC32_PEA | Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1 | 1 | 334 | 1.0E-17 |
| sp|A2RVM0|TIC32_ARATH | Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1 | 4 | 284 | 2.0E-16 |
| sp|Q9VLU5|WWOX_DROME | WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1 | 5 | 330 | 3.0E-14 |
| sp|Q91WL8|WWOX_MOUSE | WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1 | 4 | 330 | 1.0E-12 |
| sp|Q5R9W5|WWOX_PONAB | WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1 | 4 | 329 | 4.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6RVV4|TIC32_PEA | Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1 | 1 | 334 | 1.0E-17 |
| sp|A2RVM0|TIC32_ARATH | Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1 | 4 | 284 | 2.0E-16 |
| sp|Q9VLU5|WWOX_DROME | WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1 | 5 | 330 | 3.0E-14 |
| sp|Q91WL8|WWOX_MOUSE | WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1 | 4 | 330 | 1.0E-12 |
| sp|Q5R9W5|WWOX_PONAB | WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1 | 4 | 329 | 4.0E-11 |
| sp|Q9ERI6|RDH14_MOUSE | Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1 | 5 | 338 | 4.0E-11 |
| sp|Q9NZC7|WWOX_HUMAN | WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1 | 4 | 329 | 7.0E-11 |
| sp|Q8W3D9|PORB_ORYSJ | Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica GN=PORB PE=2 SV=1 | 6 | 342 | 2.0E-10 |
| sp|Q42850|PORB_HORVU | Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare GN=PORB PE=2 SV=1 | 6 | 338 | 7.0E-09 |
| sp|Q9HBH5|RDH14_HUMAN | Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1 | 5 | 329 | 2.0E-08 |
| sp|Q42536|PORA_ARATH | Protochlorophyllide reductase A, chloroplastic OS=Arabidopsis thaliana GN=PORA PE=1 SV=2 | 6 | 338 | 3.0E-08 |
| sp|Q5F389|WWOX_CHICK | WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2 | 4 | 243 | 5.0E-08 |
| sp|Q7XKF3|PORA_ORYSJ | Protochlorophyllide reductase A, chloroplastic OS=Oryza sativa subsp. japonica GN=PORA PE=2 SV=1 | 63 | 338 | 6.0E-08 |
| sp|P13653|PORA_HORVU | Protochlorophyllide reductase A, chloroplastic OS=Hordeum vulgare GN=PORA PE=1 SV=1 | 63 | 338 | 3.0E-07 |
| sp|Q803A8|WWOX_DANRE | WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1 | 4 | 258 | 4.0E-07 |
| sp|Q9SDT1|POR_DAUCA | Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1 | 6 | 338 | 2.0E-06 |
| sp|Q41578|PORA_WHEAT | Protochlorophyllide reductase A, chloroplastic OS=Triticum aestivum GN=PORA PE=3 SV=1 | 63 | 338 | 2.0E-06 |
| sp|O48741|PORC_ARATH | Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana GN=PORC PE=1 SV=1 | 6 | 338 | 3.0E-06 |
| sp|Q01289|POR_PEA | Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1 | 6 | 338 | 4.0E-06 |
| sp|P21218|PORB_ARATH | Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3 | 6 | 338 | 9.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 253 | 275 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9508 MPSSGGTILVTGANGGLGSAIVAHILKEPHLASDYTAVYTVRNEQAASRLRSVLAKAPAAHKHEMLELELGSVES VKRTAAEVNRRVAAGELPPIRALILNAGYQDATAMTISDDGLEMSWQVNFLANLVLSLQLLQSMRKDDGRILLMG SWAHDIEDERNAMGGSNHLYKPPQFETLFPGPEALAKGRWSTPQDDPSWYGGHRRYGASKLCTVMLMHELANRLA KDPELSNIAVIGLDPGGMGSDISRRGSFMMSVVTMKVVLPLLAAILVRFYPNGAIRPLWKSASDVVGACFEVETP KGKFLYLNGSEEWETAKDAQDEDKRRALWQYGLEAAGIKAGDTVLADWQ* |
| Coding | >Hirsu2|9508 ATGCCATCCTCCGGGGGCACGATCCTCGTCACCGGTGCCAACGGCGGGCTCGGCTCCGCCATCGTGGCCCACATC CTCAAGGAGCCGCACCTGGCGTCCGATTACACGGCCGTGTACACCGTCCGCAACGAGCAGGCCGCGTCCCGGCTG CGTTCCGTCCTCGCCAAGGCCCCGGCCGCCCACAAGCATGAGATGCTGGAGCTGGAGCTGGGCTCGGTGGAGAGC GTCAAGAGGACGGCGGCCGAGGTCAACCGCCGCGTCGCCGCCGGAGAGCTCCCTCCCATCAGGGCGCTCATCCTC AACGCCGGATACCAAGACGCCACTGCCATGACCATTAGCGACGATGGCCTCGAGATGTCGTGGCAGGTCAATTTC CTCGCCAACCTCGTCCTCTCTCTCCAGCTGCTCCAGAGCATGCGCAAGGACGACGGCCGGATCCTGCTCATGGGC AGCTGGGCGCATGACATCGAGGATGAGCGCAACGCCATGGGAGGGAGCAACCACCTGTACAAGCCTCCTCAGTTC GAGACTCTGTTTCCCGGCCCCGAGGCGCTGGCCAAGGGTCGGTGGAGCACGCCCCAGGATGATCCGTCGTGGTAT GGCGGCCACCGCCGGTACGGGGCCAGCAAGCTGTGCACCGTGATGCTCATGCACGAGCTCGCCAACCGCTTGGCC AAGGACCCCGAGCTCTCCAACATTGCCGTCATCGGCCTGGACCCGGGCGGCATGGGGTCCGACATCTCGAGACGA GGCTCCTTCATGATGAGCGTCGTGACGATGAAGGTGGTGCTGCCGCTGCTGGCGGCCATCCTGGTCCGGTTTTAT CCGAACGGGGCCATCCGGCCCCTGTGGAAGAGCGCGTCCGACGTCGTCGGCGCATGCTTCGAGGTGGAAACGCCA AAGGGCAAGTTTCTGTATCTGAACGGGTCCGAGGAGTGGGAGACGGCCAAGGACGCGCAGGACGAGGACAAGAGA AGGGCGCTGTGGCAATACGGGCTGGAGGCCGCCGGTATCAAGGCCGGCGACACTGTTTTGGCGGATTGGCAGTGA |
| Transcript | >Hirsu2|9508 ATGCCATCCTCCGGGGGCACGATCCTCGTCACCGGTGCCAACGGCGGGCTCGGCTCCGCCATCGTGGCCCACATC CTCAAGGAGCCGCACCTGGCGTCCGATTACACGGCCGTGTACACCGTCCGCAACGAGCAGGCCGCGTCCCGGCTG CGTTCCGTCCTCGCCAAGGCCCCGGCCGCCCACAAGCATGAGATGCTGGAGCTGGAGCTGGGCTCGGTGGAGAGC GTCAAGAGGACGGCGGCCGAGGTCAACCGCCGCGTCGCCGCCGGAGAGCTCCCTCCCATCAGGGCGCTCATCCTC AACGCCGGATACCAAGACGCCACTGCCATGACCATTAGCGACGATGGCCTCGAGATGTCGTGGCAGGTCAATTTC CTCGCCAACCTCGTCCTCTCTCTCCAGCTGCTCCAGAGCATGCGCAAGGACGACGGCCGGATCCTGCTCATGGGC AGCTGGGCGCATGACATCGAGGATGAGCGCAACGCCATGGGAGGGAGCAACCACCTGTACAAGCCTCCTCAGTTC GAGACTCTGTTTCCCGGCCCCGAGGCGCTGGCCAAGGGTCGGTGGAGCACGCCCCAGGATGATCCGTCGTGGTAT GGCGGCCACCGCCGGTACGGGGCCAGCAAGCTGTGCACCGTGATGCTCATGCACGAGCTCGCCAACCGCTTGGCC AAGGACCCCGAGCTCTCCAACATTGCCGTCATCGGCCTGGACCCGGGCGGCATGGGGTCCGACATCTCGAGACGA GGCTCCTTCATGATGAGCGTCGTGACGATGAAGGTGGTGCTGCCGCTGCTGGCGGCCATCCTGGTCCGGTTTTAT CCGAACGGGGCCATCCGGCCCCTGTGGAAGAGCGCGTCCGACGTCGTCGGCGCATGCTTCGAGGTGGAAACGCCA AAGGGCAAGTTTCTGTATCTGAACGGGTCCGAGGAGTGGGAGACGGCCAAGGACGCGCAGGACGAGGACAAGAGA AGGGCGCTGTGGCAATACGGGCTGGAGGCCGCCGGTATCAAGGCCGGCGACACTGTTTTGGCGGATTGGCAGTGA |
| Gene | >Hirsu2|9508 ATGCCATCCTCCGGGGGCACGATCCTCGTCACCGGTGCCAACGGCGGGCTCGGCTCCGCCATCGTGGCCCACATC CTCAAGGAGCCGCACCTGGCGTCCGATTACACGGCCGTGTACACCGTCCGCAACGAGCAGGCCGCGTCCCGGCTG CGTTCCGTCCTCGCCAAGGCCCCGGCCGCCCACAAGCATGAGATGCTGGAGCTGGAGCTGGGCTCGGTGGAGAGC GTCAAGAGGACGGCGGCCGAGGTCAACCGCCGCGTCGCCGCCGGAGAGCTCCCTCCCATCAGGGCGCTCATCCTC AACGCCGGATACCAAGACGCCACTGCCATGGTGGGTGTGAACAGGAGCCGTCCCGCCAGCGAATGTGCATGAGTG CTCGAGTAGCCTCGTCTGACAGCCAACCATGTTGCAAGACCATTAGCGACGATGGCCTCGAGATGTCGTGGCAGG TCAATTTCCTCGCCAACCTCGTCCTCTCTCTCCAGCTGCTCCAGAGCATGCGCAAGGACGACGGCCGGATCCTGC TCATGGGCAGCTGGGCGCATGAGTGGGTGCTTCACGGCGACCGTCTGGAAACCGCGGCCGAGCCAATGCTGACGA GGCGTGAAGCATCGAGGATGAGCGCAACGCCATGGGAGGGAGCAACCACCTGTACAAGCCTCCTCAGTTCGAGAC TCTGTTTCCCGGCCCCGAGGCGCTGGCCAAGGGTCGGTGGAGCACGCCCCAGGATGATCCGTCGTGGTATGGCGG CCACCGCCGGTACGGGGCCAGCAAGCTGTGCACCGTGATGCTCATGTCAGTGTCCGTCGGGAGGGCCGCGTGCGA CGGGAGACGGAGGCTGACGGCAAGGATGCAGGCACGAGCTCGCCAACCGCTTGGCCAAGGACCCCGAGCTCTCCA ACATTGCCGTCATCGGCCTGGACCCGGGCGGCATGGGGTCCGACATCTCGAGACGAGGCTCCTTCATGATGAGCG TCGTGACGATGAAGGTGGTGCTGCCGCTGCTGGCGGCCATCCTGGTCCGGTTTTATCCGAACGGGGCCATCCGGC CCCTGTGGAAGAGCGCGTCCGACGTCGTCGGCGCATGCTTCGAGGTGGAAACGCCAAAGGGCAAGTTTCTGTATC TGAACGGGTCCGAGGAGTGGGAGACGGCCAAGGACGCGCAGGACGAGGACAAGAGAAGGGCGCTGTGGCAATACG GGCTGGAGGCCGCCGGTATCAAGGCCGGCGACACTGTTTTGGCGGATTGGCAGTGA |