Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|9474
Gene name
LocationContig_692:13064..13692
Strand+
Gene length (bp)628
Transcript length (bp)582
Coding sequence length (bp)582
Protein length (aa) 194

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain 1.1E-04 26 60

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7MF12|BETA_VIBVY Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA PE=3 SV=1 22 174 6.0E-08
sp|Q8D3K2|BETA_VIBVU Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA PE=3 SV=1 22 174 7.0E-08
sp|A7N2P9|BETA_VIBCB Oxygen-dependent choline dehydrogenase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=betA PE=3 SV=1 22 174 1.0E-07
sp|Q6LGH5|BETA_PHOPR Oxygen-dependent choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1 22 174 1.0E-07
sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ PE=1 SV=1 22 192 2.0E-06
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Swissprot ID Swissprot Description Start End E-value
sp|Q7MF12|BETA_VIBVY Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA PE=3 SV=1 22 174 6.0E-08
sp|Q8D3K2|BETA_VIBVU Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA PE=3 SV=1 22 174 7.0E-08
sp|A7N2P9|BETA_VIBCB Oxygen-dependent choline dehydrogenase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=betA PE=3 SV=1 22 174 1.0E-07
sp|Q6LGH5|BETA_PHOPR Oxygen-dependent choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1 22 174 1.0E-07
sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ PE=1 SV=1 22 192 2.0E-06
sp|Q4ZM63|BETA_PSEU2 Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=betA PE=3 SV=1 20 174 4.0E-06
sp|Q48CM7|BETA_PSE14 Oxygen-dependent choline dehydrogenase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=betA PE=3 SV=1 20 174 4.0E-06
sp|Q8PPG8|BETA_XANAC Oxygen-dependent choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=betA PE=3 SV=1 22 174 4.0E-06
sp|A5WA97|BETA_PSEP1 Oxygen-dependent choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=betA PE=3 SV=1 22 174 4.0E-06
sp|Q88CW6|BETA_PSEPK Oxygen-dependent choline dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betA PE=3 SV=1 22 174 4.0E-06
sp|Q1C932|BETA_YERPA Oxygen-dependent choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=betA PE=3 SV=1 22 174 5.0E-06
sp|Q88AE7|BETA_PSESM Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=betA PE=3 SV=1 20 174 5.0E-06
sp|Q3BXK8|BETA_XANC5 Oxygen-dependent choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=betA PE=3 SV=1 22 174 5.0E-06
sp|A7FKL6|BETA_YERP3 Oxygen-dependent choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=betA PE=3 SV=1 22 174 5.0E-06
sp|B2K8U4|BETA_YERPB Oxygen-dependent choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=betA PE=3 SV=1 22 174 5.0E-06
sp|A4TNP2|BETA_YERPP Oxygen-dependent choline dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=betA PE=3 SV=1 22 174 5.0E-06
sp|Q66D54|BETA_YERPS Oxygen-dependent choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=betA PE=3 SV=1 22 174 5.0E-06
sp|B1JSR0|BETA_YERPY Oxygen-dependent choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=betA PE=3 SV=1 22 174 5.0E-06
sp|Q8ZGW0|BETA_YERPE Oxygen-dependent choline dehydrogenase OS=Yersinia pestis GN=betA PE=3 SV=1 22 174 5.0E-06
sp|Q1CFR7|BETA_YERPN Oxygen-dependent choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=betA PE=3 SV=1 22 174 5.0E-06
sp|B0KN19|BETA_PSEPG Oxygen-dependent choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA PE=3 SV=1 22 174 6.0E-06
sp|Q8G1Z8|BETA_BRUSU Oxygen-dependent choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330) GN=betA PE=3 SV=1 23 185 7.0E-06
sp|A9M9H8|BETA_BRUC2 Oxygen-dependent choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=betA PE=3 SV=1 23 185 7.0E-06
sp|B0CKN4|BETA_BRUSI Oxygen-dependent choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=betA PE=3 SV=1 23 185 7.0E-06
sp|A5VPA6|BETA_BRUO2 Oxygen-dependent choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=betA PE=3 SV=1 23 185 7.0E-06
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.1511 0.0253 0.9196 0.104 0.0877 0.0438 0.1277 0.3813 0.0996 0.0038

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup41
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2518
Ophiocordyceps australis 1348a (Ghana) OphauG2|6397
Ophiocordyceps australis map64 (Brazil) OphauB2|1228
Ophiocordyceps australis map64 (Brazil) OphauB2|1538
Ophiocordyceps camponoti-floridani Ophcf2|01031
Ophiocordyceps camponoti-floridani Ophcf2|02174
Ophiocordyceps camponoti-floridani Ophcf2|01410
Ophiocordyceps camponoti-rufipedis Ophun1|1472
Ophiocordyceps camponoti-rufipedis Ophun1|1046
Ophiocordyceps camponoti-rufipedis Ophun1|4735
Ophiocordyceps camponoti-rufipedis Ophun1|6088
Ophiocordyceps kimflemingae Ophio5|2180
Ophiocordyceps kimflemingae Ophio5|2725
Ophiocordyceps kimflemingae Ophio5|4485
Ophiocordyceps kimflemingae Ophio5|7497
Ophiocordyceps subramaniannii Hirsu2|8297
Ophiocordyceps subramaniannii Hirsu2|7922
Ophiocordyceps subramaniannii Hirsu2|5937
Ophiocordyceps subramaniannii Hirsu2|4290
Ophiocordyceps subramaniannii Hirsu2|9474 (this protein)
Ophiocordyceps subramaniannii Hirsu2|195

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|9474
MKVSLASAALASVAAAVELSGYDYIVVGAGAGGGPLAARLAMAGHKTLLIEAGGDPGVNVNYTVPAYSAKSSEDE
TMAWNFFVRHYADDERQARDYKTTYETSDGQLYTGLHPPPGARMLGTLYPRAAALGGCSVHNALVTVYPHRSDFD
ALALLTGDASWSAKRMRRYFARLERNRYLLPGLKGHGYDGWLC*
Coding >Hirsu2|9474
ATGAAAGTCAGCCTCGCCTCTGCCGCGCTCGCCTCGGTGGCCGCAGCGGTCGAGCTCTCCGGCTATGACTACATC
GTCGTCGGCGCCGGGGCCGGCGGCGGCCCGCTGGCGGCGCGGCTGGCCATGGCCGGGCACAAGACGCTCCTCATC
GAGGCCGGCGGCGACCCGGGCGTCAACGTCAACTACACGGTGCCGGCCTACTCGGCCAAGTCGTCCGAGGACGAG
ACCATGGCCTGGAACTTCTTCGTCCGGCACTACGCCGACGACGAGCGGCAGGCGCGCGACTACAAGACGACGTAC
GAGACGAGCGACGGCCAGCTCTACACCGGCCTGCACCCGCCGCCGGGCGCGCGCATGCTGGGCACGCTGTACCCG
CGCGCCGCCGCCCTGGGCGGCTGCTCCGTCCACAACGCCCTCGTCACCGTCTACCCGCACCGGTCCGACTTCGAC
GCGCTGGCGCTGCTGACGGGCGACGCCTCGTGGTCGGCGAAGCGCATGAGGCGCTACTTCGCCCGCCTCGAGCGC
AACCGCTACCTCCTGCCGGGGCTCAAGGGCCACGGCTACGACGGCTGGCTCTGCTGA
Transcript >Hirsu2|9474
ATGAAAGTCAGCCTCGCCTCTGCCGCGCTCGCCTCGGTGGCCGCAGCGGTCGAGCTCTCCGGCTATGACTACATC
GTCGTCGGCGCCGGGGCCGGCGGCGGCCCGCTGGCGGCGCGGCTGGCCATGGCCGGGCACAAGACGCTCCTCATC
GAGGCCGGCGGCGACCCGGGCGTCAACGTCAACTACACGGTGCCGGCCTACTCGGCCAAGTCGTCCGAGGACGAG
ACCATGGCCTGGAACTTCTTCGTCCGGCACTACGCCGACGACGAGCGGCAGGCGCGCGACTACAAGACGACGTAC
GAGACGAGCGACGGCCAGCTCTACACCGGCCTGCACCCGCCGCCGGGCGCGCGCATGCTGGGCACGCTGTACCCG
CGCGCCGCCGCCCTGGGCGGCTGCTCCGTCCACAACGCCCTCGTCACCGTCTACCCGCACCGGTCCGACTTCGAC
GCGCTGGCGCTGCTGACGGGCGACGCCTCGTGGTCGGCGAAGCGCATGAGGCGCTACTTCGCCCGCCTCGAGCGC
AACCGCTACCTCCTGCCGGGGCTCAAGGGCCACGGCTACGACGGCTGGCTCTGCTGA
Gene >Hirsu2|9474
ATGAAAGTCAGCCTCGCCTCTGCCGCGCTCGCCTCGGTGGCCGCAGCGGTCGAGCTCTCCGGCTATGACTACATC
GTCGTCGGCGCCGGGGCCGGCGGCGGCCCGCTGGCGGCGCGGCTGGCCATGGCCGGGCACAAGACGCTCCTCATC
GAGGCCGGCGGCGACCCGGGCGTCAACGTCAACTACACGGTGCCGGCCTACTCGGCCAAGTCGTCCGAGGACGAG
ACCATGGCCTGGAACTTCTTCGTCCGGCACTACGCCGACGACGAGCGGCAGGCGCGCGACTACAAGACGACGTAC
GAGACGAGCGACGGCCAGCTCTACACCGGCCTGCACCCGCCGCCGGGCGCGCGCATGCTGGGCACGCTGTACCCG
CGCGCCGCCGCCCTGGGCGGCTGCTCCGTCCACAACGCCCTCGTCACCGTCTACCCGCACCGGTCCGACTTCGAC
GCGCTGGCGCTGCTGACGGGCGACGCCTCGTGGTCGGCGAAGCGCATGAGGCGCTACTTCGCCCGCCTCGAGCGC
AACCGCTACCTCCTGCCGGGGCTCAAGGGCCACGGCTACGACGGCTGGCTGTCGACGGAGACGGCGCCGCTGACC
ATCGCCCTGACCGACCCGGAGCTGCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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