Protein ID | Hirsu2|9474 |
Gene name | |
Location | Contig_692:13064..13692 |
Strand | + |
Gene length (bp) | 628 |
Transcript length (bp) | 582 |
Coding sequence length (bp) | 582 |
Protein length (aa) | 194 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 1.1E-04 | 26 | 60 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q7MF12|BETA_VIBVY | Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA PE=3 SV=1 | 22 | 174 | 6.0E-08 |
sp|Q8D3K2|BETA_VIBVU | Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA PE=3 SV=1 | 22 | 174 | 7.0E-08 |
sp|A7N2P9|BETA_VIBCB | Oxygen-dependent choline dehydrogenase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=betA PE=3 SV=1 | 22 | 174 | 1.0E-07 |
sp|Q6LGH5|BETA_PHOPR | Oxygen-dependent choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1 | 22 | 174 | 1.0E-07 |
sp|Q00593|ALKJ_PSEOL | Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ PE=1 SV=1 | 22 | 192 | 2.0E-06 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q7MF12|BETA_VIBVY | Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA PE=3 SV=1 | 22 | 174 | 6.0E-08 |
sp|Q8D3K2|BETA_VIBVU | Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA PE=3 SV=1 | 22 | 174 | 7.0E-08 |
sp|A7N2P9|BETA_VIBCB | Oxygen-dependent choline dehydrogenase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=betA PE=3 SV=1 | 22 | 174 | 1.0E-07 |
sp|Q6LGH5|BETA_PHOPR | Oxygen-dependent choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1 | 22 | 174 | 1.0E-07 |
sp|Q00593|ALKJ_PSEOL | Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ PE=1 SV=1 | 22 | 192 | 2.0E-06 |
sp|Q4ZM63|BETA_PSEU2 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=betA PE=3 SV=1 | 20 | 174 | 4.0E-06 |
sp|Q48CM7|BETA_PSE14 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=betA PE=3 SV=1 | 20 | 174 | 4.0E-06 |
sp|Q8PPG8|BETA_XANAC | Oxygen-dependent choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=betA PE=3 SV=1 | 22 | 174 | 4.0E-06 |
sp|A5WA97|BETA_PSEP1 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=betA PE=3 SV=1 | 22 | 174 | 4.0E-06 |
sp|Q88CW6|BETA_PSEPK | Oxygen-dependent choline dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betA PE=3 SV=1 | 22 | 174 | 4.0E-06 |
sp|Q1C932|BETA_YERPA | Oxygen-dependent choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=betA PE=3 SV=1 | 22 | 174 | 5.0E-06 |
sp|Q88AE7|BETA_PSESM | Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=betA PE=3 SV=1 | 20 | 174 | 5.0E-06 |
sp|Q3BXK8|BETA_XANC5 | Oxygen-dependent choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=betA PE=3 SV=1 | 22 | 174 | 5.0E-06 |
sp|A7FKL6|BETA_YERP3 | Oxygen-dependent choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=betA PE=3 SV=1 | 22 | 174 | 5.0E-06 |
sp|B2K8U4|BETA_YERPB | Oxygen-dependent choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=betA PE=3 SV=1 | 22 | 174 | 5.0E-06 |
sp|A4TNP2|BETA_YERPP | Oxygen-dependent choline dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=betA PE=3 SV=1 | 22 | 174 | 5.0E-06 |
sp|Q66D54|BETA_YERPS | Oxygen-dependent choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=betA PE=3 SV=1 | 22 | 174 | 5.0E-06 |
sp|B1JSR0|BETA_YERPY | Oxygen-dependent choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=betA PE=3 SV=1 | 22 | 174 | 5.0E-06 |
sp|Q8ZGW0|BETA_YERPE | Oxygen-dependent choline dehydrogenase OS=Yersinia pestis GN=betA PE=3 SV=1 | 22 | 174 | 5.0E-06 |
sp|Q1CFR7|BETA_YERPN | Oxygen-dependent choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=betA PE=3 SV=1 | 22 | 174 | 5.0E-06 |
sp|B0KN19|BETA_PSEPG | Oxygen-dependent choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA PE=3 SV=1 | 22 | 174 | 6.0E-06 |
sp|Q8G1Z8|BETA_BRUSU | Oxygen-dependent choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330) GN=betA PE=3 SV=1 | 23 | 185 | 7.0E-06 |
sp|A9M9H8|BETA_BRUC2 | Oxygen-dependent choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=betA PE=3 SV=1 | 23 | 185 | 7.0E-06 |
sp|B0CKN4|BETA_BRUSI | Oxygen-dependent choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=betA PE=3 SV=1 | 23 | 185 | 7.0E-06 |
sp|A5VPA6|BETA_BRUO2 | Oxygen-dependent choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=betA PE=3 SV=1 | 23 | 185 | 7.0E-06 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1511 | 0.0253 | 0.9196 | 0.104 | 0.0877 | 0.0438 | 0.1277 | 0.3813 | 0.0996 | 0.0038 |
Orthofinder run ID | 4 |
Orthogroup | 41 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|9474 MKVSLASAALASVAAAVELSGYDYIVVGAGAGGGPLAARLAMAGHKTLLIEAGGDPGVNVNYTVPAYSAKSSEDE TMAWNFFVRHYADDERQARDYKTTYETSDGQLYTGLHPPPGARMLGTLYPRAAALGGCSVHNALVTVYPHRSDFD ALALLTGDASWSAKRMRRYFARLERNRYLLPGLKGHGYDGWLC* |
Coding | >Hirsu2|9474 ATGAAAGTCAGCCTCGCCTCTGCCGCGCTCGCCTCGGTGGCCGCAGCGGTCGAGCTCTCCGGCTATGACTACATC GTCGTCGGCGCCGGGGCCGGCGGCGGCCCGCTGGCGGCGCGGCTGGCCATGGCCGGGCACAAGACGCTCCTCATC GAGGCCGGCGGCGACCCGGGCGTCAACGTCAACTACACGGTGCCGGCCTACTCGGCCAAGTCGTCCGAGGACGAG ACCATGGCCTGGAACTTCTTCGTCCGGCACTACGCCGACGACGAGCGGCAGGCGCGCGACTACAAGACGACGTAC GAGACGAGCGACGGCCAGCTCTACACCGGCCTGCACCCGCCGCCGGGCGCGCGCATGCTGGGCACGCTGTACCCG CGCGCCGCCGCCCTGGGCGGCTGCTCCGTCCACAACGCCCTCGTCACCGTCTACCCGCACCGGTCCGACTTCGAC GCGCTGGCGCTGCTGACGGGCGACGCCTCGTGGTCGGCGAAGCGCATGAGGCGCTACTTCGCCCGCCTCGAGCGC AACCGCTACCTCCTGCCGGGGCTCAAGGGCCACGGCTACGACGGCTGGCTCTGCTGA |
Transcript | >Hirsu2|9474 ATGAAAGTCAGCCTCGCCTCTGCCGCGCTCGCCTCGGTGGCCGCAGCGGTCGAGCTCTCCGGCTATGACTACATC GTCGTCGGCGCCGGGGCCGGCGGCGGCCCGCTGGCGGCGCGGCTGGCCATGGCCGGGCACAAGACGCTCCTCATC GAGGCCGGCGGCGACCCGGGCGTCAACGTCAACTACACGGTGCCGGCCTACTCGGCCAAGTCGTCCGAGGACGAG ACCATGGCCTGGAACTTCTTCGTCCGGCACTACGCCGACGACGAGCGGCAGGCGCGCGACTACAAGACGACGTAC GAGACGAGCGACGGCCAGCTCTACACCGGCCTGCACCCGCCGCCGGGCGCGCGCATGCTGGGCACGCTGTACCCG CGCGCCGCCGCCCTGGGCGGCTGCTCCGTCCACAACGCCCTCGTCACCGTCTACCCGCACCGGTCCGACTTCGAC GCGCTGGCGCTGCTGACGGGCGACGCCTCGTGGTCGGCGAAGCGCATGAGGCGCTACTTCGCCCGCCTCGAGCGC AACCGCTACCTCCTGCCGGGGCTCAAGGGCCACGGCTACGACGGCTGGCTCTGCTGA |
Gene | >Hirsu2|9474 ATGAAAGTCAGCCTCGCCTCTGCCGCGCTCGCCTCGGTGGCCGCAGCGGTCGAGCTCTCCGGCTATGACTACATC GTCGTCGGCGCCGGGGCCGGCGGCGGCCCGCTGGCGGCGCGGCTGGCCATGGCCGGGCACAAGACGCTCCTCATC GAGGCCGGCGGCGACCCGGGCGTCAACGTCAACTACACGGTGCCGGCCTACTCGGCCAAGTCGTCCGAGGACGAG ACCATGGCCTGGAACTTCTTCGTCCGGCACTACGCCGACGACGAGCGGCAGGCGCGCGACTACAAGACGACGTAC GAGACGAGCGACGGCCAGCTCTACACCGGCCTGCACCCGCCGCCGGGCGCGCGCATGCTGGGCACGCTGTACCCG CGCGCCGCCGCCCTGGGCGGCTGCTCCGTCCACAACGCCCTCGTCACCGTCTACCCGCACCGGTCCGACTTCGAC GCGCTGGCGCTGCTGACGGGCGACGCCTCGTGGTCGGCGAAGCGCATGAGGCGCTACTTCGCCCGCCTCGAGCGC AACCGCTACCTCCTGCCGGGGCTCAAGGGCCACGGCTACGACGGCTGGCTGTCGACGGAGACGGCGCCGCTGACC ATCGCCCTGACCGACCCGGAGCTGCTGA |