© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9452 |
| Gene name | |
| Location | Contig_69:10216..11052 |
| Strand | - |
| Gene length (bp) | 836 |
| Transcript length (bp) | 708 |
| Coding sequence length (bp) | 708 |
| Protein length (aa) | 236 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13489 | Methyltransf_23 | Methyltransferase domain | 1.5E-07 | 57 | 155 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.6251 | 0.6215 | 0.0496 | 0.0561 | 0.2046 | 0.0324 | 0.1097 | 0.1118 | 0.0869 | 0.0073 |
| Orthofinder run ID | 4 |
| Orthogroup | 6073 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9452 MSDTQDVLLKSPLPAPGSTYKWELHGIDIHDEYLKPALKRRVHPDLRLHDVNCEFPAEWNWQNSFDIVHQRLLIW GIKKQDWPKAVERLLGLVKPGGWLELVEVVWVDNDVEITHPELAKQKIFQTWTCDQHGFDIDVGHKLERMLQQAG CQKVAKYEYELGIGAKAKRDYWKGKSMQMWNETYRSFEYKVPRDGISGVAKTPQELHDFLDRLNVEIEEHGYAPK INFVIGQKPA* |
| Coding | >Hirsu2|9452 ATGAGCGACACTCAGGACGTCCTGCTCAAGTCCCCATTGCCCGCACCTGGATCTACCTACAAGTGGGAGCTACAC GGCATCGACATCCACGATGAATACTTGAAACCAGCACTCAAGCGTCGCGTGCATCCCGACCTGCGATTGCATGAC GTGAACTGCGAGTTCCCAGCGGAATGGAACTGGCAAAACTCGTTCGACATTGTCCACCAACGTCTGCTCATTTGG GGCATCAAGAAGCAAGACTGGCCCAAGGCAGTCGAGAGACTTCTGGGCCTCGTGAAACCGGGCGGCTGGCTCGAG CTGGTGGAAGTCGTCTGGGTCGACAACGATGTTGAAATCACGCACCCCGAACTTGCAAAACAGAAAATCTTCCAG ACATGGACGTGCGACCAGCATGGATTCGACATAGACGTTGGCCACAAGCTCGAGAGGATGCTCCAGCAGGCGGGA TGCCAAAAAGTGGCCAAGTACGAGTATGAGCTTGGAATTGGCGCCAAGGCGAAGAGGGACTACTGGAAGGGCAAG TCGATGCAGATGTGGAACGAGACGTATAGGAGTTTTGAGTACAAGGTCCCTCGGGACGGTATTTCTGGCGTCGCC AAAACGCCCCAAGAGCTTCATGACTTCCTGGACAGGCTGAATGTCGAGATCGAGGAGCATGGCTATGCGCCTAAG ATTAATTTTGTGATCGGTCAGAAGCCGGCCTAG |
| Transcript | >Hirsu2|9452 ATGAGCGACACTCAGGACGTCCTGCTCAAGTCCCCATTGCCCGCACCTGGATCTACCTACAAGTGGGAGCTACAC GGCATCGACATCCACGATGAATACTTGAAACCAGCACTCAAGCGTCGCGTGCATCCCGACCTGCGATTGCATGAC GTGAACTGCGAGTTCCCAGCGGAATGGAACTGGCAAAACTCGTTCGACATTGTCCACCAACGTCTGCTCATTTGG GGCATCAAGAAGCAAGACTGGCCCAAGGCAGTCGAGAGACTTCTGGGCCTCGTGAAACCGGGCGGCTGGCTCGAG CTGGTGGAAGTCGTCTGGGTCGACAACGATGTTGAAATCACGCACCCCGAACTTGCAAAACAGAAAATCTTCCAG ACATGGACGTGCGACCAGCATGGATTCGACATAGACGTTGGCCACAAGCTCGAGAGGATGCTCCAGCAGGCGGGA TGCCAAAAAGTGGCCAAGTACGAGTATGAGCTTGGAATTGGCGCCAAGGCGAAGAGGGACTACTGGAAGGGCAAG TCGATGCAGATGTGGAACGAGACGTATAGGAGTTTTGAGTACAAGGTCCCTCGGGACGGTATTTCTGGCGTCGCC AAAACGCCCCAAGAGCTTCATGACTTCCTGGACAGGCTGAATGTCGAGATCGAGGAGCATGGCTATGCGCCTAAG ATTAATTTTGTGATCGGTCAGAAGCCGGCCTAG |
| Gene | >Hirsu2|9452 ATGAGCGACACTCAGGACGTCCTGCTCAAGTCCCCATTGCCCGCACCTGGATCTACCGTCCGAGTCTTGGACAGT GGATGTGCAGACGGTGTGTCTTGCTCCAGTGCAATACCCTGACCGTTCACTCAAGCGCATATATACATGCAGGAA CCTGGCTGCGCGACTTATCCGGCCTCAATCCGCAGTACAAGTGGGAGCTACACGGCATCGACATCCACGATGAAT ACTTGAAACCAGCACTCAAGCGTCGCGTGCATCCCGACCTGCGATTGCATGACGTGAACTGCGAGTTCCCAGCGG AATGGAACTGGCAAAACTCGTTCGACATTGTCCACCAACGTCTGCTCATTTGGGGCATCAAGAAGCAAGACTGGC CCAAGGCAGTCGAGAGACTTCTGGGCCTCGTGAAACCGGGCGGCTGGCTCGAGCTGGTGGAAGTCGTCTGGGTCG ACAACGATGTTGAAATCACGCACCCCGAACTTGCAAAACAGAAAATCTTCCAGACATGGACGTGCGACCAGCATG GATTCGACATAGACGTTGGCCACAAGCTCGAGAGGATGCTCCAGCAGGCGGGATGCCAAAAAGTGGCCAAGTACG AGTATGAGCTTGGAATTGGCGCCAAGGCGAAGAGGGACTACTGGAAGGGCAAGTCGATGCAGATGTGGAACGAGA CGTATAGGAGTTTTGAGTACAAGGTCCCTCGGGACGGTATTTCTGGCGTCGCCAAAACGCCCCAAGAGCTTCATG ACTTCCTGGACAGGCTGAATGTCGAGATCGAGGAGCATGGCTATGCGCCTAAGATTAATTTTGTGATCGGTCAGA AGCCGGCCTAG |