Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|9431
Gene name
LocationContig_687:211..580
Strand+
Gene length (bp)369
Transcript length (bp)369
Coding sequence length (bp)369
Protein length (aa) 123

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus 0.6134 0.53 0.4778 0.2283 0.1384 0.1181 0.1654 0.1276 0.0625 0.059

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 10 32 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup10916
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|9431 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|9431
MTDALGRASAAGLVFFCSSSAAGLVVFSFCSSVVPAIAAADDEGGPGVAGGDVIGRAPDGEDGRDEDEDNRRRRA
VTRERPDRGGLARLCRSGPAPSGKGPRVEETRAQRPTTMADIGARRW*
Coding >Hirsu2|9431
ATGACCGACGCGCTCGGCCGCGCCTCCGCCGCCGGCCTCGTCTTCTTCTGCTCCTCCTCCGCCGCCGGCCTCGTC
GTCTTCTCCTTCTGCTCCTCCGTCGTGCCCGCCATCGCTGCCGCCGACGACGAGGGCGGCCCGGGCGTTGCCGGC
GGTGATGTCATCGGCCGTGCGCCCGACGGGGAAGATGGCCGCGACGAGGACGAAGACAACCGCCGCCGCAGAGCC
GTGACGAGGGAGAGGCCGGACAGAGGAGGCCTCGCGCGCCTATGCCGGTCGGGTCCGGCGCCTAGCGGAAAGGGG
CCGAGGGTAGAGGAAACGCGAGCCCAGCGTCCGACGACGATGGCAGACATTGGCGCGCGCCGGTGGTGA
Transcript >Hirsu2|9431
ATGACCGACGCGCTCGGCCGCGCCTCCGCCGCCGGCCTCGTCTTCTTCTGCTCCTCCTCCGCCGCCGGCCTCGTC
GTCTTCTCCTTCTGCTCCTCCGTCGTGCCCGCCATCGCTGCCGCCGACGACGAGGGCGGCCCGGGCGTTGCCGGC
GGTGATGTCATCGGCCGTGCGCCCGACGGGGAAGATGGCCGCGACGAGGACGAAGACAACCGCCGCCGCAGAGCC
GTGACGAGGGAGAGGCCGGACAGAGGAGGCCTCGCGCGCCTATGCCGGTCGGGTCCGGCGCCTAGCGGAAAGGGG
CCGAGGGTAGAGGAAACGCGAGCCCAGCGTCCGACGACGATGGCAGACATTGGCGCGCGCCGGTGGTGA
Gene >Hirsu2|9431
ATGACCGACGCGCTCGGCCGCGCCTCCGCCGCCGGCCTCGTCTTCTTCTGCTCCTCCTCCGCCGCCGGCCTCGTC
GTCTTCTCCTTCTGCTCCTCCGTCGTGCCCGCCATCGCTGCCGCCGACGACGAGGGCGGCCCGGGCGTTGCCGGC
GGTGATGTCATCGGCCGTGCGCCCGACGGGGAAGATGGCCGCGACGAGGACGAAGACAACCGCCGCCGCAGAGCC
GTGACGAGGGAGAGGCCGGACAGAGGAGGCCTCGCGCGCCTATGCCGGTCGGGTCCGGCGCCTAGCGGAAAGGGG
CCGAGGGTAGAGGAAACGCGAGCCCAGCGTCCGACGACGATGGCAGACATTGGCGCGCGCCGGTGGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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