Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|9405
Gene name
LocationContig_681:49..1993
Strand-
Gene length (bp)1944
Transcript length (bp)1449
Coding sequence length (bp)1449
Protein length (aa) 483

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-12 81 147

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O14369|SCE3_SCHPO Probable RNA-binding protein sce3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sce3 PE=1 SV=1 1 228 2.0E-29
sp|P23588|IF4B_HUMAN Eukaryotic translation initiation factor 4B OS=Homo sapiens GN=EIF4B PE=1 SV=2 11 193 2.0E-14
sp|Q5XI72|IF4H_RAT Eukaryotic translation initiation factor 4H OS=Rattus norvegicus GN=Eif4h PE=1 SV=1 71 151 7.0E-14
sp|Q9WUK2|IF4H_MOUSE Eukaryotic translation initiation factor 4H OS=Mus musculus GN=Eif4h PE=1 SV=3 71 151 8.0E-14
sp|Q15056|IF4H_HUMAN Eukaryotic translation initiation factor 4H OS=Homo sapiens GN=EIF4H PE=1 SV=5 71 151 8.0E-14
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Swissprot ID Swissprot Description Start End E-value
sp|O14369|SCE3_SCHPO Probable RNA-binding protein sce3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sce3 PE=1 SV=1 1 228 2.0E-29
sp|P23588|IF4B_HUMAN Eukaryotic translation initiation factor 4B OS=Homo sapiens GN=EIF4B PE=1 SV=2 11 193 2.0E-14
sp|Q5XI72|IF4H_RAT Eukaryotic translation initiation factor 4H OS=Rattus norvegicus GN=Eif4h PE=1 SV=1 71 151 7.0E-14
sp|Q9WUK2|IF4H_MOUSE Eukaryotic translation initiation factor 4H OS=Mus musculus GN=Eif4h PE=1 SV=3 71 151 8.0E-14
sp|Q15056|IF4H_HUMAN Eukaryotic translation initiation factor 4H OS=Homo sapiens GN=EIF4H PE=1 SV=5 71 151 8.0E-14
sp|Q1JPH6|IF4H_BOVIN Eukaryotic translation initiation factor 4H OS=Bos taurus GN=EIF4H PE=2 SV=1 71 151 9.0E-14
sp|Q5RBR8|IF4H_PONAB Eukaryotic translation initiation factor 4H OS=Pongo abelii GN=EIF4H PE=2 SV=1 71 151 9.0E-14
sp|Q8BGD9|IF4B_MOUSE Eukaryotic translation initiation factor 4B OS=Mus musculus GN=Eif4b PE=1 SV=1 11 193 4.0E-13
sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gar2 PE=1 SV=2 75 153 7.0E-11
sp|Q04836|CP31A_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1 74 157 3.0E-10
sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1 SV=1 72 153 4.0E-10
sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b PE=2 SV=1 78 148 8.0E-10
sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1 78 148 8.0E-10
sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1 78 148 1.0E-09
sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=1 SV=3 78 148 2.0E-09
sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3 78 148 2.0E-09
sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3 78 148 2.0E-09
sp|Q93VI4|PABN1_ARATH Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1 78 148 3.0E-08
sp|Q9LX90|PABN3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1 78 148 5.0E-08
sp|Q9FJN9|PABN2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1 78 148 7.0E-08
sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1L PE=2 SV=1 78 148 1.0E-07
sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpn1l PE=2 SV=1 78 148 3.0E-07
sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1 81 148 3.0E-07
sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 80 165 3.0E-07
sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1 81 148 3.0E-07
sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1 74 152 5.0E-07
sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2 SV=1 78 148 5.0E-07
sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1 SV=2 78 148 6.0E-07
sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1 SV=1 78 148 6.0E-07
sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2 SV=1 78 148 6.0E-07
sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1 81 148 7.0E-07
sp|Q9FGS0|CP31B_ARATH RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 SV=1 77 152 7.0E-07
sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1 81 148 7.0E-07
sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1 81 148 7.0E-07
sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2 78 148 9.0E-07
sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1 78 148 9.0E-07
sp|Q09301|YQOC_CAEEL Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=3 SV=1 78 165 1.0E-06
sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=3 SV=2 78 165 2.0E-06
sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=Pabpn1l-a PE=1 SV=1 78 148 3.0E-06
sp|Q39061|CP33_ARATH RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1 80 161 5.0E-06
sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 72 152 6.0E-06
sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 74 152 8.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm Nuclear localization signal 0.6655 0.3399 0.0136 0.0598 0.0754 0.0102 0.0851 0.0239 0.0275 0.0044

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup4506
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|5390
Ophiocordyceps australis map64 (Brazil) OphauB2|5769
Ophiocordyceps camponoti-floridani Ophcf2|05984
Ophiocordyceps camponoti-rufipedis Ophun1|5804
Ophiocordyceps kimflemingae Ophio5|6224
Ophiocordyceps subramaniannii Hirsu2|9405 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|9405
MAPKKKEQQKMSLGDFLTDSGFGGGSWADEVEETYVTGTQPLPPSDRPRPSGMSSWQDRSYPSRPSFPTSIPDKP
PYTAHLGNLSYDATVETVSEFFEGCDVASVRIIEDREMQRPKGFGYVEFTNVDGLKKALDLDGQSFQGRMIKIKV
ADPPRGGDGRMESARDLTDWTRKGPLPDLPTRSGRQPSDFGDRRPRDPAVESRPARELTWERRGPLSPLPQQEFA
PRSRDGSRPRPAPEGLGERSESFRGNRQAPPAAWGEPRQEAARPPRWGASGEQQPQPERASSSAAEKDLQWRDRM
RPDAAVKSTSPSRDGSEAPPSPSMSSAAPAAAMRPRLNLQKRTVSEAADAVTTPVSGTDSKASPFGAARPIDTAT
REKEIEEKRQQAIREKREADEKAKEERRLAKQAATAKAEADAEAEAEAAKAAEEKAAAQAEAEAEAKGEAEAEEK
QNGAAPAGEQKGSVRNREAREPSKDSAANPNG*
Coding >Hirsu2|9405
ATGGCTCCCAAAAAGAAGGAACAGCAGAAAATGTCCCTCGGAGACTTTCTGACGGACTCAGGCTTCGGAGGAGGC
TCCTGGGCCGATGAGGTCGAGGAAACCTATGTCACCGGCACCCAGCCGTTGCCGCCCAGCGATAGGCCTCGCCCA
AGCGGCATGTCGTCGTGGCAGGACCGATCCTACCCTTCTCGCCCTTCCTTCCCCACGAGCATCCCCGACAAGCCG
CCCTACACCGCCCACCTCGGCAATCTCTCCTACGACGCCACCGTCGAGACTGTGTCCGAGTTCTTTGAGGGCTGC
GATGTCGCCAGCGTCCGCATCATCGAGGACCGCGAGATGCAACGCCCCAAGGGCTTCGGCTACGTCGAGTTTACC
AATGTCGACGGGCTCAAGAAGGCGCTCGACCTTGACGGCCAGTCGTTCCAAGGCAGAATGATCAAGATCAAGGTG
GCCGATCCTCCCCGTGGCGGGGACGGCCGAATGGAGTCTGCGCGCGACCTGACCGACTGGACTCGCAAGGGTCCG
CTTCCCGACCTCCCCACCCGATCCGGCCGCCAGCCGTCTGACTTCGGTGACCGCCGCCCGCGAGACCCCGCCGTG
GAGAGCCGCCCCGCCCGCGAATTGACTTGGGAGCGCAGAGGGCCGCTGTCCCCACTGCCGCAGCAAGAGTTCGCC
CCTCGGTCTCGCGACGGCAGCCGCCCTCGCCCCGCCCCGGAAGGGCTCGGCGAACGCAGCGAATCGTTCCGCGGC
AATAGACAAGCACCCCCCGCTGCCTGGGGCGAGCCGCGACAAGAGGCCGCCCGTCCTCCCCGCTGGGGGGCCAGC
GGGGAGCAGCAGCCTCAACCCGAGCGCGCGAGCAGCAGCGCGGCCGAAAAGGACCTGCAGTGGCGCGATCGGATG
CGCCCCGACGCGGCCGTCAAGTCGACGTCCCCGTCGCGCGACGGCAGCGAGGCGCCGCCGTCGCCCTCGATGTCC
TCGGCCGCGCCCGCCGCCGCCATGCGCCCGCGCCTGAACCTGCAGAAGCGAACCGTGTCCGAGGCCGCCGACGCC
GTGACGACGCCCGTCAGCGGCACCGACTCCAAGGCCAGCCCCTTCGGCGCGGCCCGCCCCATCGACACGGCCACG
AGGGAGAAGGAGATTGAGGAGAAGCGACAGCAGGCGATCCGAGAGAAACGCGAGGCCGACGAGAAGGCCAAGGAG
GAGCGACGCCTGGCCAAGCAGGCGGCCACCGCCAAGGCGGAGGCGGATGCCGAGGCGGAAGCCGAGGCGGCCAAG
GCGGCCGAGGAGAAGGCGGCGGCGCAAGCCGAGGCAGAGGCCGAGGCCAAGGGCGAGGCCGAAGCGGAGGAGAAG
CAGAACGGGGCGGCCCCGGCGGGAGAGCAAAAGGGGTCGGTGCGGAACCGAGAAGCGCGCGAGCCCAGCAAGGAC
TCGGCGGCCAACCCCAACGGATGA
Transcript >Hirsu2|9405
ATGGCTCCCAAAAAGAAGGAACAGCAGAAAATGTCCCTCGGAGACTTTCTGACGGACTCAGGCTTCGGAGGAGGC
TCCTGGGCCGATGAGGTCGAGGAAACCTATGTCACCGGCACCCAGCCGTTGCCGCCCAGCGATAGGCCTCGCCCA
AGCGGCATGTCGTCGTGGCAGGACCGATCCTACCCTTCTCGCCCTTCCTTCCCCACGAGCATCCCCGACAAGCCG
CCCTACACCGCCCACCTCGGCAATCTCTCCTACGACGCCACCGTCGAGACTGTGTCCGAGTTCTTTGAGGGCTGC
GATGTCGCCAGCGTCCGCATCATCGAGGACCGCGAGATGCAACGCCCCAAGGGCTTCGGCTACGTCGAGTTTACC
AATGTCGACGGGCTCAAGAAGGCGCTCGACCTTGACGGCCAGTCGTTCCAAGGCAGAATGATCAAGATCAAGGTG
GCCGATCCTCCCCGTGGCGGGGACGGCCGAATGGAGTCTGCGCGCGACCTGACCGACTGGACTCGCAAGGGTCCG
CTTCCCGACCTCCCCACCCGATCCGGCCGCCAGCCGTCTGACTTCGGTGACCGCCGCCCGCGAGACCCCGCCGTG
GAGAGCCGCCCCGCCCGCGAATTGACTTGGGAGCGCAGAGGGCCGCTGTCCCCACTGCCGCAGCAAGAGTTCGCC
CCTCGGTCTCGCGACGGCAGCCGCCCTCGCCCCGCCCCGGAAGGGCTCGGCGAACGCAGCGAATCGTTCCGCGGC
AATAGACAAGCACCCCCCGCTGCCTGGGGCGAGCCGCGACAAGAGGCCGCCCGTCCTCCCCGCTGGGGGGCCAGC
GGGGAGCAGCAGCCTCAACCCGAGCGCGCGAGCAGCAGCGCGGCCGAAAAGGACCTGCAGTGGCGCGATCGGATG
CGCCCCGACGCGGCCGTCAAGTCGACGTCCCCGTCGCGCGACGGCAGCGAGGCGCCGCCGTCGCCCTCGATGTCC
TCGGCCGCGCCCGCCGCCGCCATGCGCCCGCGCCTGAACCTGCAGAAGCGAACCGTGTCCGAGGCCGCCGACGCC
GTGACGACGCCCGTCAGCGGCACCGACTCCAAGGCCAGCCCCTTCGGCGCGGCCCGCCCCATCGACACGGCCACG
AGGGAGAAGGAGATTGAGGAGAAGCGACAGCAGGCGATCCGAGAGAAACGCGAGGCCGACGAGAAGGCCAAGGAG
GAGCGACGCCTGGCCAAGCAGGCGGCCACCGCCAAGGCGGAGGCGGATGCCGAGGCGGAAGCCGAGGCGGCCAAG
GCGGCCGAGGAGAAGGCGGCGGCGCAAGCCGAGGCAGAGGCCGAGGCCAAGGGCGAGGCCGAAGCGGAGGAGAAG
CAGAACGGGGCGGCCCCGGCGGGAGAGCAAAAGGGGTCGGTGCGGAACCGAGAAGCGCGCGAGCCCAGCAAGGAC
TCGGCGGCCAACCCCAACGGATGA
Gene >Hirsu2|9405
ATGGGTCTGTCTGCCTCTTTCCAGGCGATGCTCTGACGCCGACCCTGATGCTGACCCTGCCGCCAGCTCCCAAAA
AGAAGGAACAGCAGAAAATGTCCCTCGGAGACTTTCTGACGGACTCAGGTTCGTCCCAGTCCCGCCTCCGTCACC
TCGCCTTCGTCACCTCGCCTTCGTCTTGCCATCCGTCCATCGCACGCCCGATGCATCCGCCATTGCCGTCCTTTG
CTGACCCGTGCCCTCTAGGCTTCGGAGGAGGCTCCTGGGCCGATGAGGTCGAGGAAACCTATGGTGAGTGCCGCC
CGCCCGCTCTTCCCATCGTGGCGTCACGGCTAACATAATGATGCAGTCACCGGTCCGTGCCGTCTTCGCCCGAGC
CCCGACCCCCCCCCTTTCCCGCACACGCGGCAAGCTCAAGCACTGACCGGACCCCATCAGGCACCCAGCCGTTGC
CGCCCAGCGATAGGCCTCGCCCAAGCGGCATGTCGTCGTGGCAGGACCGATGTGAGCACCCCGGCGCCGTCTCCT
CCCGGACCCTGCTTCGGCACTGACCGCTTGCCGCCAGCCTACCCTTCTCGCCCTTCCTTCCCCACGAGCATCCCC
GACAAGCCGCCCTACACCGCCCACCTCGGCAATCTCTCCTACGACGCCACCGTCGAGACTGTGTCCGAGTTCTTT
GAGGGCTGCGATGTCGCCAGCGTCCGCATCATCGAGGACCGCGAGATGCAACGCCCCAAGGGCTTCGGCTACGTC
GAGTTTACCAATGTCGACGGGCTCAAGAAGGCGCTCGACCTTGACGGCCAGTCGTTCCAAGGCAGAATGATCAAG
ATCAAGGTGGCCGATCCTCGTATGTGACGCTTCAGCCCGCCTGTCGTCCCGTCTCCCACCCCAGCTGACGTGTCC
CTGCAGCCCGTGGCGGGGACGGCCGAATGGAGTCTGCGCGCGACCTGACCGACTGGACTCGCAAGGGTCCGCTTC
CCGACCTCCCCACCCGATCCGGCCGCCAGCCGTCTGACTTCGGTGACCGCCGCCCGCGAGACCCCGCCGTGGAGA
GCCGCCCCGCCCGCGAATTGACTTGGGAGCGCAGAGGGCCGCTGTCCCCACTGCCGCAGCAAGAGTTCGCCCCTC
GGTCTCGCGACGGCAGCCGCCCTCGCCCCGCCCCGGAAGGGCTCGGCGAACGCAGCGAATCGTTCCGCGGCAATA
GACAAGCACCCCCCGCTGCCTGGGGCGAGCCGCGACAAGAGGCCGCCCGTCCTCCCCGCTGGGGGGCCAGCGGGG
AGCAGCAGCCTCAACCCGAGCGCGCGAGCAGCAGCGCGGCCGAAAAGGACCTGCAGTGGCGCGATCGGATGCGCC
CCGACGCGGCCGTCAAGTCGACGTCCCCGTCGCGCGACGGCAGCGAGGCGCCGCCGTCGCCCTCGATGTCCTCGG
CCGCGCCCGCCGCCGCCATGCGCCCGCGCCTGAACCTGCAGAAGCGAACCGTGTCCGAGGCCGCCGACGCCGTGA
CGACGCCCGTCAGCGGCACCGACTCCAAGGCCAGCCCCTTCGGCGCGGCCCGCCCCATCGACACGGCCACGAGGG
AGAAGGAGATTGAGGAGAAGCGACAGCAGGCGATCCGAGAGAAACGCGAGGCCGACGAGAAGGCCAAGGAGGAGC
GACGCCTGGCCAAGCAGGCGGCCACCGCCAAGGCGGAGGCGGATGCCGAGGCGGAAGCCGAGGCGGCCAAGGCGG
CCGAGGAGAAGGCGGCGGCGCAAGCCGAGGCAGAGGCCGAGGCCAAGGGCGAGGCCGAAGCGGAGGAGAAGCAGA
ACGGGGCGGCCCCGGCGGGAGAGCAAAAGGGGTCGGTGCGGAACCGAGAAGCGCGCGAGCCCAGCAAGGACTCGG
CGGCCAACCCCAAGTCCAAGGCGGCCGAGGCCGGCAACTGGCGGTCGGCGTCGAGCGAGCAGCGGATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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