Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|939
Gene name
LocationContig_1198:3578..3924
Strand+
Gene length (bp)346
Transcript length (bp)207
Coding sequence length (bp)207
Protein length (aa) 69

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06624 RAMP4 Ribosome associated membrane protein RAMP4 1.2E-17 2 62

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005783 endoplasmic reticulum Yes
GO:0043227 membrane-bounded organelle No
GO:0043229 intracellular organelle No
GO:0044444 cytoplasmic part No
GO:0044464 cell part No
GO:0043231 intracellular membrane-bounded organelle No
GO:0043226 organelle No
GO:0044424 intracellular part No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 37 0.5

Transmembrane Domains

Domain # Start End Length
1 41 63 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|939
MAQTLEQRRRNAKFAKEQEARMGMSPEQMQKRVKETPKSSISMFWIALLGFIVFGGLLFEAVARMLGQ*
Coding >Hirsu2|939
ATGGCGCAAACGCTGGAGCAACGCCGCCGCAACGCAAAGTTCGCCAAGGAGCAGGAGGCGCGCATGGGCATGTCG
CCCGAGCAGATGCAGAAGCGCGTCAAGGAGACGCCCAAGTCGTCCATCTCCATGTTCTGGATCGCCCTCCTCGGC
TTCATCGTCTTCGGCGGCCTGCTGTTCGAGGCCGTGGCCCGCATGCTCGGCCAGTGA
Transcript >Hirsu2|939
ATGGCGCAAACGCTGGAGCAACGCCGCCGCAACGCAAAGTTCGCCAAGGAGCAGGAGGCGCGCATGGGCATGTCG
CCCGAGCAGATGCAGAAGCGCGTCAAGGAGACGCCCAAGTCGTCCATCTCCATGTTCTGGATCGCCCTCCTCGGC
TTCATCGTCTTCGGCGGCCTGCTGTTCGAGGCCGTGGCCCGCATGCTCGGCCAGTGA
Gene >Hirsu2|939
ATGGTACGTTGCCGCCTCGTTCCCCTACGCGCGCAAAAGCATGCCCCGTCTAACCCCGTCCCTTCGCAGGCGCAA
ACGCTGGAGCAACGCCGCCGCAACGCAAAGTTCGCCAAGGAGCAGGAGGCGCGCATGGGCATGTCGCCCGAGCAG
ATGCAGAAGCGCGTCAAGGAGACGCCCAAGTCGTCCATCTCCATGTTCTGGATCGGTGAGTGGCGCGGCGATGCG
AGCCCGCGCGTAGAGAGAGGCTCGGTCCGCTGACGCGCACACGCACGGAATAGCCCTCCTCGGCTTCATCGTCTT
CGGCGGCCTGCTGTTCGAGGCCGTGGCCCGCATGCTCGGCCAGTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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