Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	Hirsu2|9340
Gene name
Location	Contig_671:10545..12672
Strand	+
Gene length (bp)	2127
Transcript length (bp)	1998
Coding sequence length (bp)	1998
Protein length (aa)	666

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF09531	Ndc1_Nup	Nucleoporin protein Ndc1-Nup	7.0E-188	17	612

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|G0S235|NDC1_CHATD	Nucleoporin NDC1 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=NDC1 PE=3 SV=1	7	621	2.0E-161
sp|O13961|NDC1_SCHPO	Nuclear envelope protein ndc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut11 PE=2 SV=2	2	604	6.0E-23

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 29	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	30	52	22
2	57	79	22
3	218	240	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2|9340 MAGTPSRRAPYKDTLQPALHRRFSSTATLLLAVAYLQAVLLATWSSYFWSWFPLGPAGIRTTLIFACGLAILILR IANYHVGLKTTASGLQVLGSAMLSLQTYETGFWYGFSSLLFCPVFLTSMSDSANLHWITYFSGDRARLNERPLFL ACYLATCALSQTIQHYRLDVDRLDLGLSKPRPEDREKGSAVLPGSFHAVLVQLPCVLTGCVKQAASTLFLTLVLY ALFLRSFAWGWALAFLRPFYSLPQTSILPSSWPTDIFLLARCVYAGTLLLFLWSAGNTAFSIFMVKAPLKNGQPL TSESKDPNGSLLNGLKSKKLSIKSFAMWELALIAKDFEARRRAIYSDIDRKDGPMWAQIYAICMEVLKEVESRAD DYGKPVASVASEPAAAVTRQRVSAPVREEPILSKTGQASGLVGGIERAWDQIARAPGSSPVSELSPLAKKTWKEA KDRMLSKEQQQALSADHIKGEFEQHAASLMKMEWAGQLLRQDFRTRFAAAVLGTPYAEPTLYMNAVQALSQLAVH SLKEDEFGNVHRDVATIVRTMTAVIIKVEALKTRFPDHWTDVSGVRESPEVDALVEALRTGLDQVVVTFQPYSSD LRLSRGDLRLAKEAAAKPKELLEKPKETAAGETSGKTRGVEEKRKTELGRAQEKVHQRIEMEQVR*
Coding	>Hirsu2|9340 ATGGCGGGCACTCCGAGCCGCAGAGCTCCTTATAAGGACACCTTGCAGCCCGCCCTACACCGGCGCTTTTCTTCG ACCGCCACCCTCCTGCTGGCCGTGGCGTACCTGCAAGCCGTGCTGCTGGCAACCTGGAGCTCTTACTTCTGGTCC TGGTTTCCGCTCGGCCCTGCTGGCATCCGAACCACGCTCATCTTCGCCTGCGGACTCGCCATCCTAATCTTGCGG ATAGCCAATTACCATGTCGGTCTCAAGACGACAGCCTCTGGGCTGCAAGTACTCGGCTCCGCCATGCTCAGCCTT CAGACGTACGAGACCGGCTTTTGGTACGGCTTCTCGAGCCTCCTCTTCTGCCCCGTCTTCCTGACCTCCATGTCG GACTCGGCAAACCTTCATTGGATTACCTACTTCAGTGGCGACCGCGCCAGACTCAATGAGCGGCCCTTGTTCCTG GCGTGTTATCTGGCGACGTGCGCGCTATCGCAGACAATCCAACACTACAGGCTCGATGTGGATCGTCTCGACCTC GGACTGTCAAAGCCGAGACCCGAGGATCGAGAGAAGGGCTCGGCGGTCCTGCCGGGGTCCTTTCACGCCGTTCTC GTACAACTGCCGTGCGTTCTGACGGGGTGCGTCAAGCAGGCGGCATCAACACTTTTCCTGACTTTGGTCCTCTAC GCCCTTTTCCTGAGATCTTTTGCATGGGGCTGGGCACTTGCCTTCTTGCGCCCATTCTACAGCCTGCCCCAGACA AGTATTCTGCCGTCCTCGTGGCCGACTGACATATTCCTCCTTGCTCGATGCGTGTACGCCGGGACGCTTCTTCTT TTCCTGTGGTCGGCGGGAAATACGGCATTTTCCATCTTCATGGTCAAGGCGCCCCTCAAAAACGGGCAGCCTTTG ACGTCAGAATCCAAAGACCCCAACGGGAGCCTGCTGAATGGCCTGAAAAGCAAGAAGCTTTCCATCAAGTCATTT GCCATGTGGGAACTGGCATTGATCGCGAAGGATTTTGAAGCGCGCAGGCGAGCCATCTACAGCGACATTGACCGG AAAGACGGCCCCATGTGGGCGCAGATCTACGCTATTTGCATGGAGGTGCTAAAGGAGGTCGAATCGCGGGCCGAC GACTACGGCAAACCGGTTGCGTCCGTCGCTTCCGAGCCGGCAGCAGCGGTGACGAGGCAACGTGTTTCGGCCCCG GTCCGGGAGGAACCGATTTTGAGCAAGACGGGACAAGCCTCCGGGCTTGTTGGAGGAATCGAGAGGGCCTGGGAT CAGATTGCTCGGGCTCCCGGCTCCTCTCCGGTCTCAGAGCTGAGTCCACTGGCCAAGAAGACGTGGAAGGAAGCC AAGGACCGTATGCTTAGCAAGGAGCAGCAGCAGGCTCTGTCTGCCGACCACATCAAGGGCGAATTCGAACAGCAC GCCGCCAGCCTGATGAAGATGGAGTGGGCTGGACAGCTGCTCCGCCAGGACTTCCGCACCCGGTTCGCAGCTGCA GTATTGGGCACGCCCTATGCCGAGCCGACGCTCTACATGAATGCGGTCCAGGCGCTCAGTCAGTTGGCTGTGCAT AGCCTGAAGGAAGACGAGTTTGGCAACGTGCATCGAGACGTGGCGACTATCGTGCGGACGATGACGGCGGTGATC ATTAAGGTGGAGGCGCTCAAGACGCGGTTCCCCGACCATTGGACAGACGTCTCGGGTGTCAGAGAAAGCCCCGAG GTGGACGCACTGGTGGAGGCCCTGCGCACCGGGCTGGATCAGGTCGTCGTCACATTTCAGCCGTACAGCAGCGAC CTGCGGCTTTCCCGCGGCGACCTGCGGCTGGCGAAGGAAGCCGCGGCAAAACCAAAGGAGTTACTGGAAAAGCCG AAGGAGACGGCGGCCGGGGAGACGAGTGGGAAGACCAGGGGCGTCGAGGAAAAGAGGAAGACGGAGCTGGGAAGG GCGCAAGAGAAGGTGCATCAACGCATAGAGATGGAGCAGGTTCGGTGA
Transcript	>Hirsu2|9340 ATGGCGGGCACTCCGAGCCGCAGAGCTCCTTATAAGGACACCTTGCAGCCCGCCCTACACCGGCGCTTTTCTTCG ACCGCCACCCTCCTGCTGGCCGTGGCGTACCTGCAAGCCGTGCTGCTGGCAACCTGGAGCTCTTACTTCTGGTCC TGGTTTCCGCTCGGCCCTGCTGGCATCCGAACCACGCTCATCTTCGCCTGCGGACTCGCCATCCTAATCTTGCGG ATAGCCAATTACCATGTCGGTCTCAAGACGACAGCCTCTGGGCTGCAAGTACTCGGCTCCGCCATGCTCAGCCTT CAGACGTACGAGACCGGCTTTTGGTACGGCTTCTCGAGCCTCCTCTTCTGCCCCGTCTTCCTGACCTCCATGTCG GACTCGGCAAACCTTCATTGGATTACCTACTTCAGTGGCGACCGCGCCAGACTCAATGAGCGGCCCTTGTTCCTG GCGTGTTATCTGGCGACGTGCGCGCTATCGCAGACAATCCAACACTACAGGCTCGATGTGGATCGTCTCGACCTC GGACTGTCAAAGCCGAGACCCGAGGATCGAGAGAAGGGCTCGGCGGTCCTGCCGGGGTCCTTTCACGCCGTTCTC GTACAACTGCCGTGCGTTCTGACGGGGTGCGTCAAGCAGGCGGCATCAACACTTTTCCTGACTTTGGTCCTCTAC GCCCTTTTCCTGAGATCTTTTGCATGGGGCTGGGCACTTGCCTTCTTGCGCCCATTCTACAGCCTGCCCCAGACA AGTATTCTGCCGTCCTCGTGGCCGACTGACATATTCCTCCTTGCTCGATGCGTGTACGCCGGGACGCTTCTTCTT TTCCTGTGGTCGGCGGGAAATACGGCATTTTCCATCTTCATGGTCAAGGCGCCCCTCAAAAACGGGCAGCCTTTG ACGTCAGAATCCAAAGACCCCAACGGGAGCCTGCTGAATGGCCTGAAAAGCAAGAAGCTTTCCATCAAGTCATTT GCCATGTGGGAACTGGCATTGATCGCGAAGGATTTTGAAGCGCGCAGGCGAGCCATCTACAGCGACATTGACCGG AAAGACGGCCCCATGTGGGCGCAGATCTACGCTATTTGCATGGAGGTGCTAAAGGAGGTCGAATCGCGGGCCGAC GACTACGGCAAACCGGTTGCGTCCGTCGCTTCCGAGCCGGCAGCAGCGGTGACGAGGCAACGTGTTTCGGCCCCG GTCCGGGAGGAACCGATTTTGAGCAAGACGGGACAAGCCTCCGGGCTTGTTGGAGGAATCGAGAGGGCCTGGGAT CAGATTGCTCGGGCTCCCGGCTCCTCTCCGGTCTCAGAGCTGAGTCCACTGGCCAAGAAGACGTGGAAGGAAGCC AAGGACCGTATGCTTAGCAAGGAGCAGCAGCAGGCTCTGTCTGCCGACCACATCAAGGGCGAATTCGAACAGCAC GCCGCCAGCCTGATGAAGATGGAGTGGGCTGGACAGCTGCTCCGCCAGGACTTCCGCACCCGGTTCGCAGCTGCA GTATTGGGCACGCCCTATGCCGAGCCGACGCTCTACATGAATGCGGTCCAGGCGCTCAGTCAGTTGGCTGTGCAT AGCCTGAAGGAAGACGAGTTTGGCAACGTGCATCGAGACGTGGCGACTATCGTGCGGACGATGACGGCGGTGATC ATTAAGGTGGAGGCGCTCAAGACGCGGTTCCCCGACCATTGGACAGACGTCTCGGGTGTCAGAGAAAGCCCCGAG GTGGACGCACTGGTGGAGGCCCTGCGCACCGGGCTGGATCAGGTCGTCGTCACATTTCAGCCGTACAGCAGCGAC CTGCGGCTTTCCCGCGGCGACCTGCGGCTGGCGAAGGAAGCCGCGGCAAAACCAAAGGAGTTACTGGAAAAGCCG AAGGAGACGGCGGCCGGGGAGACGAGTGGGAAGACCAGGGGCGTCGAGGAAAAGAGGAAGACGGAGCTGGGAAGG GCGCAAGAGAAGGTGCATCAACGCATAGAGATGGAGCAGGTTCGGTGA
Gene	>Hirsu2|9340 ATGGCGGGCACTCCGAGCCGCAGAGCTCCTTATAAGGACACCTTGCAGCCCGCCCTACACCGGCGCTTTTCTTCG ACCGCCACCCTCCTGCTGGCCGTGGCGTACCTGCAAGCCGTGCTGCTGGCAACCTGGAGCTCTTGTAAGCCCGCG GCTGTCCTGTCGAGGCGCAGAGTTCGCGCTCGTTTGGCTGATGTTCAACCTTAGACTTCTGGTCCTGGTTTCCGC TCGGCCCTGCTGGCATCCGAACCACGCTCATCTTCGCCTGCGGACTCGCCATCCTAATCTTGCGGATAGCCAATT ACCATGTCGGTCTCAAGACGACAGCCTCTGGGCTGCAAGTACTCGGCTCCGCCATGCTCAGCCTTCAGACGTACG AGACCGGCTTTTGGTACGGCTTCTCGAGCCTCCTCTTCTGCCCCGTCTTCCTGACCTCCATGTCGGACTCGGCAA ACCTTCATTGGATTACCTACTTCAGTGGCGACCGCGCCAGACTCAATGAGCGGCCCTTGTTCCTGGCGTGTTATC TGGCGACGTGCGCGCTATCGCAGACAATCCAACACTACAGGCTCGATGTGGATCGTCTCGACCTCGGACTGTCAA AGCCGAGACCCGAGGATCGAGAGAAGGGCTCGGCGGTCCTGCCGGGGTCCTTTCACGCCGTTCTCGTACAACTGC CGTGCGTTCTGACGGGGTGCGTCAAGCAGGCGGCATCAACACTTTTCCTGACTTTGGTCCTCTACGCCCTTTTCC TGAGATCTTTTGCATGGGGCTGGGCACTTGCCTTCTTGCGCCCATTCTACAGCCTGCCCCAGACAAGTATTCTGC CGTCCTCGTGGCCGACTGACATATTCCTCCTTGCTCGATGCGTGTACGCCGGGACGCTTCTTCTTTTCCTGTGGT CGGCGGGAAATACGGCATTTTCCATCTTCATGGTCAAGGCGCCCCTCAAAAACGGGCAGCCTTTGACGTCAGAAT CCAAAGACCCCAACGGGAGCCTGCTGAATGGCCTGAAAAGCAAGAAGCTTTCCATCAAGGTGAGCTCGTCCCGTC TCGTCACAGGGATGGCGAAGTGAGGCGACCAGCGCTGACTAGTAACAGTCATTTGCCATGTGGGAACTGGCATTG ATCGCGAAGGATTTTGAAGCGCGCAGGCGAGCCATCTACAGCGACATTGACCGGAAAGACGGCCCCATGTGGGCG CAGATCTACGCTATTTGCATGGAGGTGCTAAAGGAGGTCGAATCGCGGGCCGACGACTACGGCAAACCGGTTGCG TCCGTCGCTTCCGAGCCGGCAGCAGCGGTGACGAGGCAACGTGTTTCGGCCCCGGTCCGGGAGGAACCGATTTTG AGCAAGACGGGACAAGCCTCCGGGCTTGTTGGAGGAATCGAGAGGGCCTGGGATCAGATTGCTCGGGCTCCCGGC TCCTCTCCGGTCTCAGAGCTGAGTCCACTGGCCAAGAAGACGTGGAAGGAAGCCAAGGACCGTATGCTTAGCAAG GAGCAGCAGCAGGCTCTGTCTGCCGACCACATCAAGGGCGAATTCGAACAGCACGCCGCCAGCCTGATGAAGATG GAGTGGGCTGGACAGCTGCTCCGCCAGGACTTCCGCACCCGGTTCGCAGCTGCAGTATTGGGCACGCCCTATGCC GAGCCGACGCTCTACATGAATGCGGTCCAGGCGCTCAGTCAGTTGGCTGTGCATAGCCTGAAGGAAGACGAGTTT GGCAACGTGCATCGAGACGTGGCGACTATCGTGCGGACGATGACGGCGGTGATCATTAAGGTGGAGGCGCTCAAG ACGCGGTTCCCCGACCATTGGACAGACGTCTCGGGTGTCAGAGAAAGCCCCGAGGTGGACGCACTGGTGGAGGCC CTGCGCACCGGGCTGGATCAGGTCGTCGTCACATTTCAGCCGTACAGCAGCGACCTGCGGCTTTCCCGCGGCGAC CTGCGGCTGGCGAAGGAAGCCGCGGCAAAACCAAAGGAGTTACTGGAAAAGCCGAAGGAGACGGCGGCCGGGGAG ACGAGTGGGAAGACCAGGGGCGTCGAGGAAAAGAGGAAGACGGAGCTGGGAAGGGCGCAAGAGAAGGTGCATCAA CGCATAGAGATGGAGCAGGTTCGGTGA