© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9339 |
| Gene name | |
| Location | Contig_671:9337..10204 |
| Strand | - |
| Gene length (bp) | 867 |
| Transcript length (bp) | 804 |
| Coding sequence length (bp) | 804 |
| Protein length (aa) | 268 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14523 | Syntaxin_2 | Syntaxin-like protein | 8.2E-25 | 32 | 129 |
| PF05739 | SNARE | SNARE domain | 1.7E-13 | 212 | 261 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P93654|SYP22_ARATH | Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1 | 1 | 254 | 3.0E-26 |
| sp|O94651|PEP12_SCHPO | Syntaxin pep12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pep12 PE=1 SV=2 | 61 | 267 | 3.0E-25 |
| sp|Q39233|SYP21_ARATH | Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1 | 49 | 253 | 2.0E-23 |
| sp|Q5RBW6|STX12_PONAB | Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1 | 1 | 254 | 5.0E-23 |
| sp|Q86Y82|STX12_HUMAN | Syntaxin-12 OS=Homo sapiens GN=STX12 PE=1 SV=1 | 1 | 252 | 8.0E-22 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P93654|SYP22_ARATH | Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1 | 1 | 254 | 3.0E-26 |
| sp|O94651|PEP12_SCHPO | Syntaxin pep12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pep12 PE=1 SV=2 | 61 | 267 | 3.0E-25 |
| sp|Q39233|SYP21_ARATH | Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1 | 49 | 253 | 2.0E-23 |
| sp|Q5RBW6|STX12_PONAB | Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1 | 1 | 254 | 5.0E-23 |
| sp|Q86Y82|STX12_HUMAN | Syntaxin-12 OS=Homo sapiens GN=STX12 PE=1 SV=1 | 1 | 252 | 8.0E-22 |
| sp|O70439|STX7_MOUSE | Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3 | 31 | 267 | 1.0E-21 |
| sp|Q9ER00|STX12_MOUSE | Syntaxin-12 OS=Mus musculus GN=Stx12 PE=1 SV=1 | 1 | 247 | 1.0E-20 |
| sp|Q3ZBT5|STX7_BOVIN | Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1 | 17 | 247 | 3.0E-20 |
| sp|G3V7P1|STX12_RAT | Syntaxin-12 OS=Rattus norvegicus GN=Stx12 PE=1 SV=1 | 1 | 247 | 4.0E-20 |
| sp|O70257|STX7_RAT | Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4 | 17 | 247 | 1.0E-19 |
| sp|Q5R602|STX7_PONAB | Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3 | 17 | 247 | 2.0E-19 |
| sp|O15400|STX7_HUMAN | Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4 | 17 | 243 | 1.0E-18 |
| sp|Q54JY7|STX7A_DICDI | Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1 | 17 | 266 | 1.0E-18 |
| sp|P32854|PEP12_YEAST | Syntaxin PEP12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEP12 PE=1 SV=2 | 18 | 240 | 1.0E-13 |
| sp|O04378|SYP23_ARATH | Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=1 SV=1 | 8 | 228 | 1.0E-11 |
| sp|Q08144|TLG2_YEAST | T-SNARE affecting a late Golgi compartment protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG2 PE=1 SV=1 | 154 | 264 | 5.0E-07 |
| sp|Q12241|VAM3_YEAST | Syntaxin VAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAM3 PE=1 SV=1 | 8 | 245 | 6.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 247 | 266 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9339 MSYDQLSNLESGGRRGGYSDDPAFQDLQYELKSKLQSLLSGNRKLANDVNVLGTKKDTPRLRERVHNSMEKTREL CREIGDGVKRLQTWDDLSKQQKYEQTKVSSDFQAALQEFQSLQRKALEKEKASVTAARAAHESESGQAGGSAGEP LDQLQQQQQLPQLASQNEVDFQEALIVEREEEIRNIEQGVGDLNVLFRQVAQIVDEQEVGIRTIADNVENVHDDT RQADVETRQAARYQKAARNKSCCLLLILAVILTIVILAIVMG* |
| Coding | >Hirsu2|9339 ATGTCGTACGATCAGCTCTCGAACCTCGAGTCGGGCGGCCGCCGCGGCGGCTACAGCGACGATCCCGCGTTCCAA GATCTCCAGTACGAGCTCAAGTCCAAGCTGCAGTCGCTGCTGAGCGGCAACCGCAAGCTTGCCAACGATGTCAAC GTCTTGGGGACGAAGAAGGACACGCCTCGTCTGCGCGAGCGAGTGCACAATAGCATGGAGAAGACGCGCGAGCTG TGCAGGGAGATTGGCGACGGCGTCAAGCGGCTACAGACGTGGGACGATCTCTCGAAGCAGCAAAAGTACGAGCAG ACCAAGGTGTCCAGCGACTTCCAGGCAGCACTCCAGGAGTTCCAGAGCCTGCAGCGAAAGGCACTCGAGAAGGAA AAAGCGTCCGTGACGGCCGCGCGCGCCGCCCACGAGTCAGAATCCGGCCAAGCTGGCGGTTCTGCCGGCGAACCG CTCGACCAGCTACAGCAGCAGCAGCAACTCCCGCAGCTGGCCTCGCAGAATGAGGTCGATTTCCAGGAGGCCCTC ATTGTCGAACGCGAAGAGGAAATCCGCAACATCGAGCAGGGCGTCGGAGACCTGAACGTCTTGTTTCGGCAGGTA GCGCAGATCGTCGACGAGCAAGAAGTCGGAATTCGGACCATCGCGGATAACGTGGAGAACGTTCACGACGATACG CGGCAGGCAGACGTCGAGACGCGGCAGGCAGCGCGGTACCAAAAGGCCGCGCGTAACAAGAGCTGCTGCCTGCTT CTCATCTTGGCCGTGATCCTCACCATTGTGATTCTGGCCATCGTCATGGGCTGA |
| Transcript | >Hirsu2|9339 ATGTCGTACGATCAGCTCTCGAACCTCGAGTCGGGCGGCCGCCGCGGCGGCTACAGCGACGATCCCGCGTTCCAA GATCTCCAGTACGAGCTCAAGTCCAAGCTGCAGTCGCTGCTGAGCGGCAACCGCAAGCTTGCCAACGATGTCAAC GTCTTGGGGACGAAGAAGGACACGCCTCGTCTGCGCGAGCGAGTGCACAATAGCATGGAGAAGACGCGCGAGCTG TGCAGGGAGATTGGCGACGGCGTCAAGCGGCTACAGACGTGGGACGATCTCTCGAAGCAGCAAAAGTACGAGCAG ACCAAGGTGTCCAGCGACTTCCAGGCAGCACTCCAGGAGTTCCAGAGCCTGCAGCGAAAGGCACTCGAGAAGGAA AAAGCGTCCGTGACGGCCGCGCGCGCCGCCCACGAGTCAGAATCCGGCCAAGCTGGCGGTTCTGCCGGCGAACCG CTCGACCAGCTACAGCAGCAGCAGCAACTCCCGCAGCTGGCCTCGCAGAATGAGGTCGATTTCCAGGAGGCCCTC ATTGTCGAACGCGAAGAGGAAATCCGCAACATCGAGCAGGGCGTCGGAGACCTGAACGTCTTGTTTCGGCAGGTA GCGCAGATCGTCGACGAGCAAGAAGTCGGAATTCGGACCATCGCGGATAACGTGGAGAACGTTCACGACGATACG CGGCAGGCAGACGTCGAGACGCGGCAGGCAGCGCGGTACCAAAAGGCCGCGCGTAACAAGAGCTGCTGCCTGCTT CTCATCTTGGCCGTGATCCTCACCATTGTGATTCTGGCCATCGTCATGGGCTGA |
| Gene | >Hirsu2|9339 ATGTCGTACGATCAGCTCTCGAACCTCGAGTCGGGCGGCCGCCGCGGCGGCTACAGCGACGATCCCGCGTTCCAA GATCTCCAGTACGAGCTCAAGTCCAAGCTGCAGTCGCTGCTGAGCGGCAACCGCAAGCTTGCCAACGATGTCAAC GTCTTGGGGACGAAGAAGGACACGCCTCGTCTGCGCGAGCGAGTGCACAATAGCATGGAGAAGACGCGCGAGCTG TGCAGGGAGATTGGCGACGGCGTCAAGCGGCTACAGACGTGGGACGATCTCTCGGTCAGTGACCCTTGATGGACT TCCAGCACCTCCACCTTCTCGGGATACTGACAGTCGGGGCAGAAGCAGCAAAAGTACGAGCAGACCAAGGTGTCC AGCGACTTCCAGGCAGCACTCCAGGAGTTCCAGAGCCTGCAGCGAAAGGCACTCGAGAAGGAAAAAGCGTCCGTG ACGGCCGCGCGCGCCGCCCACGAGTCAGAATCCGGCCAAGCTGGCGGTTCTGCCGGCGAACCGCTCGACCAGCTA CAGCAGCAGCAGCAACTCCCGCAGCTGGCCTCGCAGAATGAGGTCGATTTCCAGGAGGCCCTCATTGTCGAACGC GAAGAGGAAATCCGCAACATCGAGCAGGGCGTCGGAGACCTGAACGTCTTGTTTCGGCAGGTAGCGCAGATCGTC GACGAGCAAGAAGTCGGAATTCGGACCATCGCGGATAACGTGGAGAACGTTCACGACGATACGCGGCAGGCAGAC GTCGAGACGCGGCAGGCAGCGCGGTACCAAAAGGCCGCGCGTAACAAGAGCTGCTGCCTGCTTCTCATCTTGGCC GTGATCCTCACCATTGTGATTCTGGCCATCGTCATGGGCTGA |