Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|9338
Gene name
Location	Contig_671:8188..9169
Strand	+
Gene length (bp)	981
Transcript length (bp)	981
Coding sequence length (bp)	981
Protein length (aa)	327

PFAM Domains

(None)

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q5R7D0\|COX18_PONAB	Mitochondrial inner membrane protein COX18 OS=Pongo abelii GN=COX18 PE=2 SV=1	52	298	2.0E-08
sp\|B0RMM6\|YIDC_XANCB	Membrane protein insertase YidC OS=Xanthomonas campestris pv. campestris (strain B100) GN=yidC PE=3 SV=1	202	309	1.0E-06
sp\|Q3BLZ7\|YIDC_XANC5	Membrane protein insertase YidC OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=yidC PE=3 SV=1	202	309	1.0E-06
sp\|Q8P338\|YIDC_XANCP	Membrane protein insertase YidC OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) GN=yidC PE=3 SV=1	202	309	2.0E-06
sp\|Q4UNK8\|YIDC_XANC8	Membrane protein insertase YidC OS=Xanthomonas campestris pv. campestris (strain 8004) GN=yidC PE=3 SV=1	202	309	2.0E-06

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q5R7D0\|COX18_PONAB	Mitochondrial inner membrane protein COX18 OS=Pongo abelii GN=COX18 PE=2 SV=1	52	298	2.0E-08
sp\|B0RMM6\|YIDC_XANCB	Membrane protein insertase YidC OS=Xanthomonas campestris pv. campestris (strain B100) GN=yidC PE=3 SV=1	202	309	1.0E-06
sp\|Q3BLZ7\|YIDC_XANC5	Membrane protein insertase YidC OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=yidC PE=3 SV=1	202	309	1.0E-06
sp\|Q8P338\|YIDC_XANCP	Membrane protein insertase YidC OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) GN=yidC PE=3 SV=1	202	309	2.0E-06
sp\|Q4UNK8\|YIDC_XANC8	Membrane protein insertase YidC OS=Xanthomonas campestris pv. campestris (strain 8004) GN=yidC PE=3 SV=1	202	309	2.0E-06
sp\|Q8PEH7\|YIDC_XANAC	Membrane protein insertase YidC OS=Xanthomonas axonopodis pv. citri (strain 306) GN=yidC PE=3 SV=1	202	309	2.0E-06
sp\|Q8VC74\|COX18_MOUSE	Mitochondrial inner membrane protein COX18 OS=Mus musculus GN=Cox18 PE=1 SV=5	52	298	8.0E-06
sp\|Q8N8Q8\|COX18_HUMAN	Mitochondrial inner membrane protein COX18 OS=Homo sapiens GN=COX18 PE=2 SV=1	52	298	9.0E-06

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 19	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	55	77	22
2	264	286	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|9338 MRLLQTSTKAAWTQPIRAGLPRTPSSARCIGRRQLHLGSLGNEAVALTAGAFGSIHSVGVPWYLTIPLVAVAVNF SFRLPNQYYARRLVVKRRELSPLVMSWRARHFGRNPAVDIGGTAERLRQLRAAGLVARSARRIYKAWGVQRWKGL TPLLGLMPFVVVSDALRRLCSAPPTLAGDSSTTLSHTGSLYDPSLAQGGCLWFGDLAAMDPYYALPLLSSAILAA SVWPKLSKDQFRALFSPNASNQPKPPIERMRDALSRAMIFMPVFPMLFAEMPSAIFLYWATSFGLGILNDSILNR LVPDRPPKLKPPVLMKTRGMTPFLRG*
Coding	>Hirsu2\|9338 ATGCGGCTTCTCCAGACATCGACCAAGGCCGCGTGGACGCAACCCATCCGTGCCGGCCTGCCGCGAACACCATCG TCAGCCCGCTGCATCGGCCGTCGCCAGCTTCACCTGGGCTCCCTCGGCAACGAAGCCGTGGCCCTGACCGCCGGC GCCTTCGGCTCCATCCACTCGGTCGGTGTGCCGTGGTATCTCACCATCCCCCTCGTCGCCGTGGCCGTCAACTTC TCCTTCCGGCTTCCCAACCAGTACTATGCTCGCCGGCTGGTCGTGAAGCGGCGTGAGCTGAGCCCGCTGGTGATG AGCTGGCGGGCACGACACTTCGGGCGCAACCCCGCAGTCGATATCGGCGGCACGGCCGAACGGCTCAGGCAACTG CGCGCTGCTGGCCTGGTGGCGAGGTCGGCCAGGAGAATCTACAAGGCCTGGGGCGTCCAGAGGTGGAAGGGCCTC ACGCCTCTCCTGGGCTTGATGCCTTTCGTCGTCGTTTCCGATGCTCTACGCCGCCTCTGCAGTGCACCACCCACC TTGGCCGGGGACTCTTCTACGACGCTCTCCCACACCGGCAGCCTTTATGATCCGTCTCTTGCCCAAGGAGGCTGT CTGTGGTTCGGCGACCTGGCCGCGATGGATCCCTACTATGCCCTTCCTCTACTCTCCTCGGCAATCCTTGCGGCC TCCGTGTGGCCGAAATTATCCAAGGACCAGTTTCGAGCCCTGTTCTCGCCCAACGCAAGCAATCAACCCAAGCCT CCCATAGAAAGAATGCGGGATGCGCTGTCAAGGGCGATGATTTTTATGCCCGTCTTCCCCATGTTGTTTGCCGAA ATGCCCAGCGCCATTTTTTTGTATTGGGCTACGTCATTTGGTCTCGGCATACTCAATGATTCGATCTTGAACCGG CTCGTTCCCGACCGGCCTCCCAAGCTCAAGCCGCCAGTGCTCATGAAGACACGAGGAATGACACCATTTCTGCGA GGATGA
Transcript	>Hirsu2\|9338 ATGCGGCTTCTCCAGACATCGACCAAGGCCGCGTGGACGCAACCCATCCGTGCCGGCCTGCCGCGAACACCATCG TCAGCCCGCTGCATCGGCCGTCGCCAGCTTCACCTGGGCTCCCTCGGCAACGAAGCCGTGGCCCTGACCGCCGGC GCCTTCGGCTCCATCCACTCGGTCGGTGTGCCGTGGTATCTCACCATCCCCCTCGTCGCCGTGGCCGTCAACTTC TCCTTCCGGCTTCCCAACCAGTACTATGCTCGCCGGCTGGTCGTGAAGCGGCGTGAGCTGAGCCCGCTGGTGATG AGCTGGCGGGCACGACACTTCGGGCGCAACCCCGCAGTCGATATCGGCGGCACGGCCGAACGGCTCAGGCAACTG CGCGCTGCTGGCCTGGTGGCGAGGTCGGCCAGGAGAATCTACAAGGCCTGGGGCGTCCAGAGGTGGAAGGGCCTC ACGCCTCTCCTGGGCTTGATGCCTTTCGTCGTCGTTTCCGATGCTCTACGCCGCCTCTGCAGTGCACCACCCACC TTGGCCGGGGACTCTTCTACGACGCTCTCCCACACCGGCAGCCTTTATGATCCGTCTCTTGCCCAAGGAGGCTGT CTGTGGTTCGGCGACCTGGCCGCGATGGATCCCTACTATGCCCTTCCTCTACTCTCCTCGGCAATCCTTGCGGCC TCCGTGTGGCCGAAATTATCCAAGGACCAGTTTCGAGCCCTGTTCTCGCCCAACGCAAGCAATCAACCCAAGCCT CCCATAGAAAGAATGCGGGATGCGCTGTCAAGGGCGATGATTTTTATGCCCGTCTTCCCCATGTTGTTTGCCGAA ATGCCCAGCGCCATTTTTTTGTATTGGGCTACGTCATTTGGTCTCGGCATACTCAATGATTCGATCTTGAACCGG CTCGTTCCCGACCGGCCTCCCAAGCTCAAGCCGCCAGTGCTCATGAAGACACGAGGAATGACACCATTTCTGCGA GGATGA
Gene	>Hirsu2\|9338 ATGCGGCTTCTCCAGACATCGACCAAGGCCGCGTGGACGCAACCCATCCGTGCCGGCCTGCCGCGAACACCATCG TCAGCCCGCTGCATCGGCCGTCGCCAGCTTCACCTGGGCTCCCTCGGCAACGAAGCCGTGGCCCTGACCGCCGGC GCCTTCGGCTCCATCCACTCGGTCGGTGTGCCGTGGTATCTCACCATCCCCCTCGTCGCCGTGGCCGTCAACTTC TCCTTCCGGCTTCCCAACCAGTACTATGCTCGCCGGCTGGTCGTGAAGCGGCGTGAGCTGAGCCCGCTGGTGATG AGCTGGCGGGCACGACACTTCGGGCGCAACCCCGCAGTCGATATCGGCGGCACGGCCGAACGGCTCAGGCAACTG CGCGCTGCTGGCCTGGTGGCGAGGTCGGCCAGGAGAATCTACAAGGCCTGGGGCGTCCAGAGGTGGAAGGGCCTC ACGCCTCTCCTGGGCTTGATGCCTTTCGTCGTCGTTTCCGATGCTCTACGCCGCCTCTGCAGTGCACCACCCACC TTGGCCGGGGACTCTTCTACGACGCTCTCCCACACCGGCAGCCTTTATGATCCGTCTCTTGCCCAAGGAGGCTGT CTGTGGTTCGGCGACCTGGCCGCGATGGATCCCTACTATGCCCTTCCTCTACTCTCCTCGGCAATCCTTGCGGCC TCCGTGTGGCCGAAATTATCCAAGGACCAGTTTCGAGCCCTGTTCTCGCCCAACGCAAGCAATCAACCCAAGCCT CCCATAGAAAGAATGCGGGATGCGCTGTCAAGGGCGATGATTTTTATGCCCGTCTTCCCCATGTTGTTTGCCGAA ATGCCCAGCGCCATTTTTTTGTATTGGGCTACGTCATTTGGTCTCGGCATACTCAATGATTCGATCTTGAACCGG CTCGTTCCCGACCGGCCTCCCAAGCTCAAGCCGCCAGTGCTCATGAAGACACGAGGAATGACACCATTTCTGCGA GGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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