© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9316 |
| Gene name | |
| Location | Contig_669:12186..13406 |
| Strand | - |
| Gene length (bp) | 1220 |
| Transcript length (bp) | 996 |
| Coding sequence length (bp) | 996 |
| Protein length (aa) | 332 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04080 | Per1 | Per1-like family | 6.0E-108 | 60 | 319 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6N9|PER1_SCHPO | Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC823.07 PE=3 SV=1 | 21 | 331 | 2.0E-69 |
| sp|P25625|PER1_YEAST | Protein PER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PER1 PE=1 SV=1 | 12 | 318 | 4.0E-54 |
| sp|Q0VFE3|PGAP3_XENTR | Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis GN=pgap3 PE=2 SV=1 | 18 | 327 | 4.0E-54 |
| sp|Q68EV0|PGAP3_XENLA | Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3 PE=2 SV=1 | 18 | 322 | 1.0E-53 |
| sp|Q7K0P4|PGAP3_DROME | Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster GN=PGAP3 PE=1 SV=2 | 13 | 313 | 4.0E-48 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6N9|PER1_SCHPO | Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC823.07 PE=3 SV=1 | 21 | 331 | 2.0E-69 |
| sp|P25625|PER1_YEAST | Protein PER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PER1 PE=1 SV=1 | 12 | 318 | 4.0E-54 |
| sp|Q0VFE3|PGAP3_XENTR | Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis GN=pgap3 PE=2 SV=1 | 18 | 327 | 4.0E-54 |
| sp|Q68EV0|PGAP3_XENLA | Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3 PE=2 SV=1 | 18 | 322 | 1.0E-53 |
| sp|Q7K0P4|PGAP3_DROME | Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster GN=PGAP3 PE=1 SV=2 | 13 | 313 | 4.0E-48 |
| sp|A8WFS8|PGAP3_DANRE | Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3 PE=2 SV=1 | 28 | 319 | 1.0E-47 |
| sp|Q96FM1|PGAP3_HUMAN | Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3 PE=1 SV=2 | 28 | 319 | 2.0E-47 |
| sp|A2V7M9|PGAP3_CRIGR | Post-GPI attachment to proteins factor 3 OS=Cricetulus griseus GN=PGAP3 PE=2 SV=1 | 29 | 319 | 8.0E-47 |
| sp|A7YWP2|PGAP3_BOVIN | Post-GPI attachment to proteins factor 3 OS=Bos taurus GN=PGAP3 PE=2 SV=1 | 28 | 319 | 2.0E-46 |
| sp|A2A559|PGAP3_MOUSE | Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3 PE=2 SV=1 | 25 | 319 | 7.0E-46 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006506 | GPI anchor biosynthetic process | Yes |
| GO:0006505 | GPI anchor metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901137 | carbohydrate derivative biosynthetic process | No |
| GO:0019637 | organophosphate metabolic process | No |
| GO:0006664 | glycolipid metabolic process | No |
| GO:0006643 | membrane lipid metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006661 | phosphatidylinositol biosynthetic process | No |
| GO:0006793 | phosphorus metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0006644 | phospholipid metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0046467 | membrane lipid biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0090407 | organophosphate biosynthetic process | No |
| GO:0046474 | glycerophospholipid biosynthetic process | No |
| GO:0046486 | glycerolipid metabolic process | No |
| GO:0008654 | phospholipid biosynthetic process | No |
| GO:1903509 | liposaccharide metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0036211 | protein modification process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0006796 | phosphate-containing compound metabolic process | No |
| GO:0046488 | phosphatidylinositol metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0009247 | glycolipid biosynthetic process | No |
| GO:0006650 | glycerophospholipid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0045017 | glycerolipid biosynthetic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0006497 | protein lipidation | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum|Golgi apparatus | Signal peptide|Transmembrane domain | 0.0598 | 0.0818 | 0.2296 | 0.3614 | 0.092 | 0.0338 | 0.8013 | 0.5527 | 0.6717 | 0.025 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 29 | 0.999717 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 147 | 165 | 18 |
| 3 | 175 | 194 | 19 |
| 4 | 206 | 225 | 19 |
| 5 | 230 | 252 | 22 |
| 6 | 264 | 282 | 18 |
| 7 | 297 | 316 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 4473 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9316 MAPSDSGRPWTRVAVLTLLVLALCGAASASVGDRLPEFHHCLEVCRAENCAPGRRQTPIPLFRRLLFWNCGSECD YTCQHIVTAERVASGRPVVQFHGKWPFRRVGGMQEPFSVLFSLGNLWAHAAGLAKVRARIPARYGLRPWYEWLAR LGVAAWALSALFHTRDFALTEQLDYFAAGASVLYGMYYAPVRIFRLDRPEPRRRSLLRLWSALCALLYLAHVAYL KGVRWDYTYNMAANVAAGIVQNVLWSWFSWDRYRKSRRFWAMWPGLVVAWVMFAMSMELFDFPPWLGCIDAHSLW HLMTIGPTVLWYNFLVKDAHDDMAGTDRLKA* |
| Coding | >Hirsu2|9316 ATGGCCCCCTCGGACTCGGGGCGGCCCTGGACCCGCGTCGCTGTGCTGACGCTGCTCGTGCTGGCGCTGTGCGGC GCGGCCTCGGCCTCGGTCGGCGACCGCCTGCCCGAGTTCCATCACTGCCTCGAGGTCTGCCGGGCCGAAAACTGC GCGCCCGGCCGACGGCAGACGCCGATCCCCCTCTTCCGCCGGCTGCTCTTCTGGAACTGCGGCTCCGAGTGCGAC TACACGTGCCAGCACATCGTGACGGCGGAGCGCGTGGCGTCGGGCCGGCCCGTGGTGCAGTTCCACGGCAAGTGG CCCTTCCGCCGCGTCGGCGGCATGCAGGAGCCCTTCTCCGTCCTCTTCTCCCTCGGCAACCTGTGGGCGCACGCG GCCGGGCTGGCCAAGGTGCGGGCCCGCATCCCGGCCCGGTACGGCCTGCGGCCGTGGTACGAGTGGCTGGCCCGG CTCGGCGTCGCCGCCTGGGCCCTCAGCGCCCTCTTCCACACCCGCGACTTCGCCCTGACCGAGCAGCTCGACTAC TTCGCCGCCGGCGCCAGCGTCCTCTACGGCATGTACTACGCGCCCGTCCGCATCTTCCGCCTCGACCGCCCGGAG CCCCGCCGCCGCTCCCTCCTCCGCCTCTGGTCCGCCCTCTGCGCCCTGCTCTACCTCGCCCACGTCGCCTACCTC AAGGGCGTCCGCTGGGACTACACCTACAACATGGCCGCCAACGTCGCCGCCGGCATCGTCCAGAACGTCCTCTGG TCCTGGTTCAGCTGGGACCGCTACCGCAAGTCGCGCCGCTTCTGGGCCATGTGGCCCGGCCTCGTCGTCGCCTGG GTCATGTTCGCCATGAGCATGGAGCTCTTCGACTTCCCCCCCTGGCTCGGCTGCATCGACGCCCACAGCCTGTGG CACCTCATGACCATTGGCCCGACCGTCCTGTGGTACAATTTCCTCGTCAAGGATGCTCACGATGATATGGCCGGC ACCGATCGACTCAAAGCTTGA |
| Transcript | >Hirsu2|9316 ATGGCCCCCTCGGACTCGGGGCGGCCCTGGACCCGCGTCGCTGTGCTGACGCTGCTCGTGCTGGCGCTGTGCGGC GCGGCCTCGGCCTCGGTCGGCGACCGCCTGCCCGAGTTCCATCACTGCCTCGAGGTCTGCCGGGCCGAAAACTGC GCGCCCGGCCGACGGCAGACGCCGATCCCCCTCTTCCGCCGGCTGCTCTTCTGGAACTGCGGCTCCGAGTGCGAC TACACGTGCCAGCACATCGTGACGGCGGAGCGCGTGGCGTCGGGCCGGCCCGTGGTGCAGTTCCACGGCAAGTGG CCCTTCCGCCGCGTCGGCGGCATGCAGGAGCCCTTCTCCGTCCTCTTCTCCCTCGGCAACCTGTGGGCGCACGCG GCCGGGCTGGCCAAGGTGCGGGCCCGCATCCCGGCCCGGTACGGCCTGCGGCCGTGGTACGAGTGGCTGGCCCGG CTCGGCGTCGCCGCCTGGGCCCTCAGCGCCCTCTTCCACACCCGCGACTTCGCCCTGACCGAGCAGCTCGACTAC TTCGCCGCCGGCGCCAGCGTCCTCTACGGCATGTACTACGCGCCCGTCCGCATCTTCCGCCTCGACCGCCCGGAG CCCCGCCGCCGCTCCCTCCTCCGCCTCTGGTCCGCCCTCTGCGCCCTGCTCTACCTCGCCCACGTCGCCTACCTC AAGGGCGTCCGCTGGGACTACACCTACAACATGGCCGCCAACGTCGCCGCCGGCATCGTCCAGAACGTCCTCTGG TCCTGGTTCAGCTGGGACCGCTACCGCAAGTCGCGCCGCTTCTGGGCCATGTGGCCCGGCCTCGTCGTCGCCTGG GTCATGTTCGCCATGAGCATGGAGCTCTTCGACTTCCCCCCCTGGCTCGGCTGCATCGACGCCCACAGCCTGTGG CACCTCATGACCATTGGCCCGACCGTCCTGTGGTACAATTTCCTCGTCAAGGATGCTCACGATGATATGGCCGGC ACCGATCGACTCAAAGCTTGA |
| Gene | >Hirsu2|9316 ATGGCCCCCTCGGACTCGGGGCGGCCCTGGACCCGCGTCGCTGTGCTGACGCTGCTCGTGCTGGCGCTGTGCGGC GCGGCCTCGGCCTCGGTCGGCGACCGCCTGCCCGAGTTCCATCACTGCCTCGAGGTGCGTGTGCCGCCGCCGTCT TGGGTCCGGAACCGTGCGGGCTGACGCTTCTTGCCCGCCTCGACAGGTCTGCCGGGCCGAAAACTGCGCGCCCGG CCGACGGCAGACGCCGATCCGTTCGTCCTCCCTCCTCTCCCTTGTCCTCGTACCCCCCGGTCCGACGACGTTGCG GCCCCGGCCGGCTGACAGGCAGATTAAAAAAAAAAAAACGACAGCCCTCTTCCGCCGGCTGCTCTTCTGGAACTG CGGCTCCGAGTGCGACTACACGTGCCAGCACATCGTGACGGCGGAGCGCGTGGCGTCGGGCCGGCCCGTGGTGCA GTTCCACGGCAAGTGGCCCTTCCGCCGCGTCGGCGGCATGCAGGAGCCCTTCTCCGTCCTCTTCTCCCTCGGCAA CCTGTGGGCGCACGCGGCCGGGCTGGCCAAGGTGCGGGCCCGCATCCCGGCCCGGTACGGCCTGCGGCCGTGGTA CGAGTGGCTGGCCCGGCTCGGCGTCGCCGCCTGGGCCCTCAGCGCCCTCTTCCACACCCGCGACTTCGCCCTGAC CGAGCAGCTCGACTACTTCGCCGCCGGCGCCAGCGTCCTCTACGGCATGTACTACGCGCCCGTCCGCATCTTCCG CCTCGACCGCCCGGAGCCCCGCCGCCGCTCCCTCCTCCGCCTCTGGTCCGCCCTCTGCGCCCTGCTCTACCTCGC CCACGTCGCCTACCTCAAGGGCGTCCGCTGGGACTACACCTACAACATGGCCGCCAACGTCGCCGCCGGCATCGT CCAGAACGTCCTCTGGTCCTGGTTCAGCTGGGACCGCTACCGCAAGTCGCGCCGCTTCTGGGCCATGTGGCCCGG CCTCGTCGTCGCCTGGGTCATGTTCGCCATGAGCATGGAGCTCTTCGACTTCCCCCCCTGGCTCGGCTGCATCGA CGCCCACAGCCTGTGGCACCTCATGACCATTGGCCCGACCGTCCTGTGGTACAAGTGAGTCCTACACGAGGAAAC GCACAAACACCACAGCCCCGACGCTGACCCGGTCCAGTTTCCTCGTCAAGGATGCTCACGATGATATGGCCGGCA CCGATCGACTCAAAGCTTGA |