© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9304 |
| Gene name | |
| Location | Contig_667:13167..14421 |
| Strand | - |
| Gene length (bp) | 1254 |
| Transcript length (bp) | 1155 |
| Coding sequence length (bp) | 1155 |
| Protein length (aa) | 385 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04258 | Peptidase_A22B | Signal peptide peptidase | 4.9E-28 | 39 | 160 |
| PF04258 | Peptidase_A22B | Signal peptide peptidase | 1.6E-18 | 230 | 294 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P49049|IMP2_CAEEL | Intramembrane protease 2 OS=Caenorhabditis elegans GN=imp-2 PE=1 SV=1 | 68 | 300 | 3.0E-23 |
| sp|P34248|YKK0_YEAST | Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL100C PE=1 SV=1 | 53 | 295 | 3.0E-22 |
| sp|Q6ZGL9|SIP1_ORYSJ | Signal peptide peptidase 1 OS=Oryza sativa subsp. japonica GN=SPP1 PE=2 SV=1 | 30 | 156 | 1.0E-19 |
| sp|B9FJ61|SIP2_ORYSJ | Signal peptide peptidase 2 OS=Oryza sativa subsp. japonica GN=SPP2 PE=2 SV=1 | 66 | 156 | 3.0E-19 |
| sp|O81062|SIP_ARATH | Signal peptide peptidase OS=Arabidopsis thaliana GN=SPP PE=2 SV=1 | 66 | 156 | 1.0E-18 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P49049|IMP2_CAEEL | Intramembrane protease 2 OS=Caenorhabditis elegans GN=imp-2 PE=1 SV=1 | 68 | 300 | 3.0E-23 |
| sp|P34248|YKK0_YEAST | Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL100C PE=1 SV=1 | 53 | 295 | 3.0E-22 |
| sp|Q6ZGL9|SIP1_ORYSJ | Signal peptide peptidase 1 OS=Oryza sativa subsp. japonica GN=SPP1 PE=2 SV=1 | 30 | 156 | 1.0E-19 |
| sp|B9FJ61|SIP2_ORYSJ | Signal peptide peptidase 2 OS=Oryza sativa subsp. japonica GN=SPP2 PE=2 SV=1 | 66 | 156 | 3.0E-19 |
| sp|O81062|SIP_ARATH | Signal peptide peptidase OS=Arabidopsis thaliana GN=SPP PE=2 SV=1 | 66 | 156 | 1.0E-18 |
| sp|Q9UTA3|YL8H_SCHPO | Probable intramembrane protease C25B8.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25B8.17 PE=3 SV=1 | 40 | 172 | 3.0E-18 |
| sp|Q9D8V0|HM13_MOUSE | Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1 | 1 | 158 | 3.0E-14 |
| sp|Q8TCT9|HM13_HUMAN | Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1 | 1 | 158 | 5.0E-14 |
| sp|Q9CUS9|SPPL3_MOUSE | Signal peptide peptidase-like 3 OS=Mus musculus GN=Sppl3 PE=1 SV=3 | 44 | 290 | 8.0E-13 |
| sp|Q8TCT6|SPPL3_HUMAN | Signal peptide peptidase-like 3 OS=Homo sapiens GN=SPPL3 PE=1 SV=1 | 44 | 290 | 8.0E-13 |
| sp|Q9D8V0|HM13_MOUSE | Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1 | 234 | 299 | 2.0E-10 |
| sp|Q8TCT9|HM13_HUMAN | Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1 | 234 | 321 | 2.0E-10 |
| sp|Q9JJF9|SPP2A_MOUSE | Signal peptide peptidase-like 2A OS=Mus musculus GN=Sppl2a PE=1 SV=2 | 214 | 302 | 5.0E-10 |
| sp|Q8TCT8|SPP2A_HUMAN | Signal peptide peptidase-like 2A OS=Homo sapiens GN=SPPL2A PE=1 SV=2 | 214 | 306 | 2.0E-09 |
| sp|Q5F383|SPP2B_CHICK | Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1 | 66 | 365 | 1.0E-08 |
| sp|Q5N808|SIPL3_ORYSJ | Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica GN=SPPL3 PE=2 SV=1 | 236 | 291 | 1.0E-07 |
| sp|Q5PQL3|SPP2B_RAT | Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1 | 214 | 354 | 1.0E-07 |
| sp|Q3TD49|SPP2B_MOUSE | Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=1 SV=2 | 214 | 290 | 1.0E-07 |
| sp|Q53P98|SIPL2_ORYSJ | Signal peptide peptidase-like 2 OS=Oryza sativa subsp. japonica GN=SPPL2 PE=2 SV=1 | 236 | 302 | 3.0E-07 |
| sp|Q8TCT7|SPP2B_HUMAN | Signal peptide peptidase-like 2B OS=Homo sapiens GN=SPPL2B PE=1 SV=2 | 214 | 290 | 9.0E-07 |
| sp|B9FJ61|SIP2_ORYSJ | Signal peptide peptidase 2 OS=Oryza sativa subsp. japonica GN=SPP2 PE=2 SV=1 | 236 | 310 | 2.0E-06 |
| sp|A2A6C4|SPP2C_MOUSE | Signal peptide peptidase-like 2C OS=Mus musculus GN=Sppl2c PE=2 SV=1 | 234 | 368 | 2.0E-06 |
| sp|Q9MA44|SIPL5_ARATH | Signal peptide peptidase-like 5 OS=Arabidopsis thaliana GN=SPPL5 PE=2 SV=1 | 236 | 292 | 2.0E-06 |
| sp|Q6ZGL9|SIP1_ORYSJ | Signal peptide peptidase 1 OS=Oryza sativa subsp. japonica GN=SPP1 PE=2 SV=1 | 236 | 295 | 4.0E-06 |
| sp|Q0DWA9|SIPL4_ORYSJ | Signal peptide peptidase-like 4 OS=Oryza sativa subsp. japonica GN=SPPL4 PE=2 SV=1 | 236 | 290 | 4.0E-06 |
| sp|Q0WMJ8|SIPL4_ARATH | Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1 | 227 | 294 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0004190 | aspartic-type endopeptidase activity | Yes |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0008233 | peptidase activity | No |
| GO:0070001 | aspartic-type peptidase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 49 | 71 | 22 |
| 2 | 93 | 115 | 22 |
| 3 | 135 | 154 | 19 |
| 4 | 236 | 258 | 22 |
| 5 | 265 | 282 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9304 LGLLARSERPRRAAWELRGLLTRKWLLKLFMHGVGEEKAKIKFAHMTALFLSVMTALVYFSTTSPLLSNMLGYGM CYGSFLILSPTDFLTGSLVLVGLFVYDIVMVFYTPYMITVASKLDVPIKLTFATAARRSMLGLGDIVIPGMLIGW ALRLDLYLHYLRKVKYESTELKIIEKDAASGQVVTRTETKHKEVKAPYVNVKGKWGEWLWTRGGLFLARPRQLPA ELAASAFPKTYFYASMTGYALGMMLTLAMLLVFNKGQPALLYLVPGVLGSVIAVALARGEMAAVWRYTEDGSLDT MDVVVDLDGEGRAINTLGKMEDGVVDTTKAKEDGKKTSSGKADGKAKKEAKGTTAKGDDDAPGHKGHKVFLLSLE ASARTEEDD* |
| Coding | >Hirsu2|9304 CTGGGACTCCTCGCCCGGTCCGAGAGGCCGAGGCGGGCCGCGTGGGAGCTGCGCGGCCTCCTGACCCGCAAGTGG CTCCTCAAGCTGTTCATGCACGGCGTCGGCGAGGAGAAGGCCAAGATCAAGTTTGCCCACATGACGGCCCTGTTC CTGTCCGTCATGACGGCCCTCGTCTACTTCTCGACCACCTCGCCGCTGCTCTCCAACATGCTGGGCTACGGCATG TGCTACGGCTCCTTTCTCATCCTCTCGCCCACCGACTTCCTGACGGGCTCTCTGGTCCTCGTCGGGCTCTTCGTT TACGACATCGTCATGGTCTTTTACACGCCCTACATGATCACCGTCGCAAGCAAGCTGGACGTGCCCATCAAACTG ACCTTCGCCACGGCGGCGAGGAGGAGCATGCTGGGGCTGGGGGACATTGTGATCCCGGGCATGCTCATCGGGTGG GCACTGAGGCTGGACCTGTACCTGCACTACCTCCGCAAGGTCAAGTACGAGTCCACGGAGCTCAAGATCATCGAG AAGGACGCGGCGTCGGGCCAGGTCGTGACCCGGACCGAGACCAAGCACAAGGAGGTCAAGGCGCCGTACGTCAAC GTCAAGGGCAAGTGGGGGGAGTGGCTGTGGACGCGCGGCGGGCTGTTCCTCGCGCGCCCCCGGCAGCTGCCCGCC GAGCTGGCGGCGTCGGCCTTCCCCAAGACGTACTTCTACGCCTCCATGACGGGCTACGCACTGGGCATGATGCTG ACGCTGGCCATGCTGCTCGTCTTCAACAAGGGCCAGCCGGCGCTGCTGTACCTCGTCCCGGGCGTGCTGGGCTCG GTCATCGCCGTGGCGCTGGCGCGGGGCGAGATGGCGGCCGTGTGGAGGTACACCGAGGACGGCAGCCTCGACACC ATGGACGTCGTCGTCGACCTCGACGGCGAGGGCCGCGCCATCAACACGCTGGGCAAGATGGAGGACGGCGTCGTC GACACGACCAAGGCCAAGGAGGACGGCAAGAAGACCTCTTCCGGCAAGGCGGACGGCAAGGCCAAGAAGGAGGCG AAAGGCACGACTGCCAAGGGGGATGACGACGCGCCGGGCCACAAGGGCCACAAGGTCTTCTTGCTCTCGCTCGAG GCGTCTGCTCGCACGGAGGAAGACGACTGA |
| Transcript | >Hirsu2|9304 CTGGGACTCCTCGCCCGGTCCGAGAGGCCGAGGCGGGCCGCGTGGGAGCTGCGCGGCCTCCTGACCCGCAAGTGG CTCCTCAAGCTGTTCATGCACGGCGTCGGCGAGGAGAAGGCCAAGATCAAGTTTGCCCACATGACGGCCCTGTTC CTGTCCGTCATGACGGCCCTCGTCTACTTCTCGACCACCTCGCCGCTGCTCTCCAACATGCTGGGCTACGGCATG TGCTACGGCTCCTTTCTCATCCTCTCGCCCACCGACTTCCTGACGGGCTCTCTGGTCCTCGTCGGGCTCTTCGTT TACGACATCGTCATGGTCTTTTACACGCCCTACATGATCACCGTCGCAAGCAAGCTGGACGTGCCCATCAAACTG ACCTTCGCCACGGCGGCGAGGAGGAGCATGCTGGGGCTGGGGGACATTGTGATCCCGGGCATGCTCATCGGGTGG GCACTGAGGCTGGACCTGTACCTGCACTACCTCCGCAAGGTCAAGTACGAGTCCACGGAGCTCAAGATCATCGAG AAGGACGCGGCGTCGGGCCAGGTCGTGACCCGGACCGAGACCAAGCACAAGGAGGTCAAGGCGCCGTACGTCAAC GTCAAGGGCAAGTGGGGGGAGTGGCTGTGGACGCGCGGCGGGCTGTTCCTCGCGCGCCCCCGGCAGCTGCCCGCC GAGCTGGCGGCGTCGGCCTTCCCCAAGACGTACTTCTACGCCTCCATGACGGGCTACGCACTGGGCATGATGCTG ACGCTGGCCATGCTGCTCGTCTTCAACAAGGGCCAGCCGGCGCTGCTGTACCTCGTCCCGGGCGTGCTGGGCTCG GTCATCGCCGTGGCGCTGGCGCGGGGCGAGATGGCGGCCGTGTGGAGGTACACCGAGGACGGCAGCCTCGACACC ATGGACGTCGTCGTCGACCTCGACGGCGAGGGCCGCGCCATCAACACGCTGGGCAAGATGGAGGACGGCGTCGTC GACACGACCAAGGCCAAGGAGGACGGCAAGAAGACCTCTTCCGGCAAGGCGGACGGCAAGGCCAAGAAGGAGGCG AAAGGCACGACTGCCAAGGGGGATGACGACGCGCCGGGCCACAAGGGCCACAAGGTCTTCTTGCTCTCGCTCGAG GCGTCTGCTCGCACGGAGGAAGACGACTGA |
| Gene | >Hirsu2|9304 CTGGGACTCCTCGCCCGGTCCGAGAGGCCGAGGCGGGCCGCGTGGGAGCTGCGCGGCCTCCTGACCCGCAAGTGG CTCCTCAAGCTGTTCATGCACGGCGTCGGCGAGGAGAAGGCCAAGATCAAGTTTGCCCACATGACGGCCCTGTTC CTGTCCGTCATGACGGCCCTCGTCTACTTCTCGACCACCTCGCCGCTGCTCTCCAACATGCTGGGCTACGGCATG TGCTACGGCTCCTTTCTCATCCTCTCGCCCACCGACTTCCTGACGGGCTCTCTGGTCCTCGTCGGGCTCTTCGTT TACGACATCGTCATGGTCTTTTACACGTAAGCTCCCCCTTCCCAACCCATCCTCGTCCTGCAGCTTGTCACGGGC ATGCGGAAGCACGGGCGCCGCTTGGCCGGACTAACCACGGGCCCCGTCAGGCCCTACATGATCACCGTCGCAAGC AAGCTGGACGTGCCCATCAAACTGACCTTCGCCACGGCGGCGAGGAGGAGCATGCTGGGGCTGGGGGACATTGTG ATCCCGGGCATGCTCATCGGGTGGGCACTGAGGCTGGACCTGTACCTGCACTACCTCCGCAAGGTCAAGTACGAG TCCACGGAGCTCAAGATCATCGAGAAGGACGCGGCGTCGGGCCAGGTCGTGACCCGGACCGAGACCAAGCACAAG GAGGTCAAGGCGCCGTACGTCAACGTCAAGGGCAAGTGGGGGGAGTGGCTGTGGACGCGCGGCGGGCTGTTCCTC GCGCGCCCCCGGCAGCTGCCCGCCGAGCTGGCGGCGTCGGCCTTCCCCAAGACGTACTTCTACGCCTCCATGACG GGCTACGCACTGGGCATGATGCTGACGCTGGCCATGCTGCTCGTCTTCAACAAGGGCCAGCCGGCGCTGCTGTAC CTCGTCCCGGGCGTGCTGGGCTCGGTCATCGCCGTGGCGCTGGCGCGGGGCGAGATGGCGGCCGTGTGGAGGTAC ACCGAGGACGGCAGCCTCGACACCATGGACGTCGTCGTCGACCTCGACGGCGAGGGCCGCGCCATCAACACGCTG GGCAAGATGGAGGACGGCGTCGTCGACACGACCAAGGCCAAGGAGGACGGCAAGAAGACCTCTTCCGGCAAGGCG GACGGCAAGGCCAAGAAGGAGGCGAAAGGCACGACTGCCAAGGGGGATGACGACGCGCCGGGCCACAAGGGCCAC AAGGTCTTCTTGCTCTCGCTCGAGGCGTCTGCTCGCACGGAGGAAGACGACTGA |