© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9280 |
| Gene name | |
| Location | Contig_664:9700..12537 |
| Strand | + |
| Gene length (bp) | 2837 |
| Transcript length (bp) | 2484 |
| Coding sequence length (bp) | 2484 |
| Protein length (aa) | 828 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04841 | Vps16_N | Vps16, N-terminal region | 6.4E-87 | 8 | 410 |
| PF04840 | Vps16_C | Vps16, C-terminal region | 8.0E-83 | 503 | 810 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UT38|VPS16_SCHPO | Probable vacuolar protein sorting-associated protein 16 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps16 PE=3 SV=1 | 9 | 818 | 0.0E+00 |
| sp|Q55C58|VPS16_DICDI | Vacuolar protein sorting-associated protein 16 homolog OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2 | 8 | 796 | 2.0E-152 |
| sp|Q920Q4|VPS16_MOUSE | Vacuolar protein sorting-associated protein 16 homolog OS=Mus musculus GN=Vps16 PE=1 SV=3 | 8 | 755 | 2.0E-138 |
| sp|Q9H269|VPS16_HUMAN | Vacuolar protein sorting-associated protein 16 homolog OS=Homo sapiens GN=VPS16 PE=1 SV=2 | 8 | 755 | 5.0E-137 |
| sp|Q93VQ0|VCL1_ARATH | Protein VACUOLELESS1 OS=Arabidopsis thaliana GN=VCL1 PE=1 SV=1 | 1 | 797 | 3.0E-133 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UT38|VPS16_SCHPO | Probable vacuolar protein sorting-associated protein 16 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps16 PE=3 SV=1 | 9 | 818 | 0.0E+00 |
| sp|Q55C58|VPS16_DICDI | Vacuolar protein sorting-associated protein 16 homolog OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2 | 8 | 796 | 2.0E-152 |
| sp|Q920Q4|VPS16_MOUSE | Vacuolar protein sorting-associated protein 16 homolog OS=Mus musculus GN=Vps16 PE=1 SV=3 | 8 | 755 | 2.0E-138 |
| sp|Q9H269|VPS16_HUMAN | Vacuolar protein sorting-associated protein 16 homolog OS=Homo sapiens GN=VPS16 PE=1 SV=2 | 8 | 755 | 5.0E-137 |
| sp|Q93VQ0|VCL1_ARATH | Protein VACUOLELESS1 OS=Arabidopsis thaliana GN=VCL1 PE=1 SV=1 | 1 | 797 | 3.0E-133 |
| sp|Q5E9L7|VPS16_BOVIN | Vacuolar protein sorting-associated protein 16 homolog OS=Bos taurus GN=VPS16 PE=2 SV=1 | 8 | 755 | 5.0E-133 |
| sp|Q03308|VPS16_YEAST | Vacuolar protein sorting-associated protein 16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS16 PE=1 SV=2 | 211 | 813 | 4.0E-62 |
| sp|Q11182|VPS16_CAEEL | Vacuolar protein sorting-associated protein 16 homolog OS=Caenorhabditis elegans GN=vps-16 PE=3 SV=2 | 13 | 746 | 6.0E-23 |
| sp|Q60V75|VPS16_CAEBR | Vacuolar protein sorting-associated protein 16 homolog OS=Caenorhabditis briggsae GN=vps-16 PE=3 SV=1 | 13 | 746 | 7.0E-23 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005737 | cytoplasm | Yes |
| GO:0006886 | intracellular protein transport | Yes |
| GO:0015031 | protein transport | No |
| GO:0005575 | cellular_component | No |
| GO:0051641 | cellular localization | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0044424 | intracellular part | No |
| GO:0006810 | transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0046907 | intracellular transport | No |
| GO:0015833 | peptide transport | No |
| GO:0033036 | macromolecule localization | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0044464 | cell part | No |
| GO:0071702 | organic substance transport | No |
| GO:0008150 | biological_process | No |
| GO:0008104 | protein localization | No |
| GO:0042886 | amide transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9280 MDSLHARADWESVGDKWFRKTQQYTAVFDQDLDLDSFIVAGAPCAGALALWRDDTKLLAHQPGMSTKPSIDIYSL AGKKLRSIPWDKTVIRGLGWSEEESLLVVTADGNVRCYDLQGDFSNFSLGHGADNYGVESCRFYDTGMVALLGNN SLVAVSSYTEPRPKLLAACPDGTIHSWAIISPDHTLSRSVEAVLSVGSTVYVVDGTDCEDRLLDIGPFSHISVSP DGRYVNLYGANGKAHIVSSDFQDKLFEHNSDSQTPPKYVEWCGSDALIAWEDEVHIIGPGDQSSTFIYESTRVHV VSEYDGARLITNDFCEFLERVPNDTMEVLGHASESSPASILLDAVGQLERESPKADDYIQLIRPNLTEAVDTCVN AAGREFDTRWQKRLLRAASFGKSVLDIYNSDEFVDMCETLRVLNAVRDFEIGIPLSYEQYHRLTPERLIQRLLNR HDYLLALKIAGHLRLPSDRIYVHWACSKVRVGAEDDETVCRLVVERLSGKPGVSFEEIARAAYHEGRARLATELL NHEARGGRQVPLLLDMEEDELALDKAIESGDTDLMLVVLMQLKKKLPLAAFFRVINARPTATAMVEAAAAREGDN ALLKDLYYQDDRRADGASVFIRESLRQPDARTASDKLALAAKLLADTKESTVELHALKEATGLLRMQEALSRDLA ETFTGLSVNETLFKLIRLGLNGQAKKVQSEFKVPDKVAWWIRLRALVAKRDWNEIEEMAKTKKSPIGWEPFFNLT LQAGNPRLAAVFIPKCTGLAAGESISMYDKCGLRVRAAEEAVRLRDGEAWQRLLDAAGRNSPEGREIERLGAAAF RK* |
| Coding | >Hirsu2|9280 ATGGACTCTCTGCACGCGAGAGCTGACTGGGAGAGTGTCGGCGACAAGTGGTTCCGCAAGACGCAGCAGTACACG GCCGTCTTCGACCAGGACCTCGACCTCGACAGCTTCATCGTTGCCGGAGCGCCCTGCGCTGGAGCCCTAGCACTA TGGCGGGACGACACCAAGCTGCTGGCGCACCAGCCGGGCATGTCGACAAAGCCGTCGATCGACATCTACAGCCTG GCTGGCAAGAAGCTGCGCAGCATACCGTGGGATAAAACGGTCATCAGGGGCCTCGGATGGTCGGAGGAGGAATCT CTGCTCGTCGTGACGGCCGACGGCAACGTGCGCTGCTACGACCTCCAGGGCGACTTCAGCAACTTTTCTCTGGGC CACGGTGCCGATAACTACGGCGTCGAGTCGTGTCGATTCTACGATACCGGCATGGTCGCCCTCTTGGGCAACAAC TCGTTAGTGGCCGTCTCTTCCTACACCGAGCCTCGACCGAAGCTGCTGGCGGCCTGCCCCGACGGCACGATCCAC TCGTGGGCCATCATATCGCCCGACCACACGCTGTCGCGGTCGGTCGAGGCGGTGCTGAGCGTCGGGTCGACCGTC TACGTCGTCGACGGCACCGACTGCGAAGACAGGTTGCTGGACATCGGCCCCTTCAGCCACATCAGCGTGTCGCCA GACGGGCGATATGTGAACCTGTACGGAGCCAACGGCAAGGCGCACATCGTCTCGAGCGACTTCCAGGACAAGCTG TTCGAGCACAACTCGGACTCGCAGACGCCGCCCAAGTACGTCGAGTGGTGCGGCAGCGATGCGCTCATTGCGTGG GAGGACGAGGTGCACATCATCGGACCCGGGGACCAGTCCTCGACTTTCATCTACGAGAGCACCCGAGTCCACGTC GTCTCTGAATACGACGGTGCTCGGCTCATCACAAACGACTTTTGCGAGTTCCTGGAGAGGGTGCCCAACGACACG ATGGAGGTGCTGGGTCACGCGTCAGAGTCGTCGCCGGCGTCGATCCTCCTCGACGCAGTCGGCCAGCTGGAGCGC GAGTCGCCCAAGGCGGACGACTACATCCAGCTCATCCGGCCCAACCTGACCGAGGCAGTTGACACGTGCGTCAAT GCGGCCGGCCGCGAGTTCGACACGCGGTGGCAAAAGAGGCTGCTCAGGGCGGCGTCGTTTGGCAAATCGGTGCTC GACATCTACAACAGCGACGAGTTCGTCGACATGTGCGAGACGTTGCGCGTCCTCAACGCCGTCCGAGACTTCGAG ATCGGCATCCCGCTGTCGTACGAGCAGTACCACCGGCTGACGCCCGAGAGACTAATCCAGCGGCTGCTCAACCGC CACGACTACCTGCTCGCCCTCAAGATCGCGGGCCACCTGCGCCTGCCGTCGGACCGCATCTACGTGCACTGGGCC TGCTCCAAGGTCCGCGTCGGCGCCGAGGACGACGAGACGGTCTGCCGGCTGGTGGTGGAGAGGCTCTCGGGCAAG CCCGGCGTCTCGTTTGAGGAGATTGCGCGGGCGGCCTACCACGAGGGCCGGGCGCGGCTGGCGACGGAGCTGCTG AACCACGAGGCGCGCGGCGGGCGGCAGGTGCCTCTCCTGCTGGACATGGAGGAGGACGAGCTGGCGCTGGACAAG GCCATCGAGAGCGGGGACACGGACCTGATGCTGGTGGTGCTGATGCAGCTGAAGAAGAAGCTGCCGCTGGCGGCC TTCTTCCGCGTCATCAACGCCCGGCCGACGGCGACGGCGATGGTGGAGGCGGCGGCGGCGAGGGAGGGCGACAAC GCGCTACTCAAGGATCTATATTACCAGGACGACCGGCGGGCGGATGGGGCGAGCGTCTTCATCCGAGAGTCGCTC CGCCAGCCGGACGCGCGCACGGCGTCGGACAAGCTGGCGCTGGCGGCCAAGCTGCTGGCGGACACGAAGGAGTCG ACGGTCGAGCTGCACGCGCTCAAGGAGGCGACGGGCCTGCTGCGGATGCAGGAGGCGCTGAGCCGAGACCTGGCG GAGACGTTCACGGGGCTCAGCGTCAACGAGACGCTCTTCAAGCTGATCCGGCTCGGGCTCAACGGCCAGGCCAAG AAGGTGCAGAGCGAGTTCAAGGTGCCGGACAAGGTGGCCTGGTGGATCCGGCTCCGGGCCCTGGTGGCGAAGCGG GACTGGAACGAGATTGAGGAGATGGCCAAGACGAAGAAAAGCCCGATCGGGTGGGAGCCCTTCTTCAACCTCACG CTGCAGGCGGGCAACCCGCGGCTGGCGGCCGTCTTCATCCCCAAGTGCACGGGGCTGGCGGCGGGCGAGAGCATC AGCATGTACGACAAGTGCGGACTGCGCGTCCGGGCGGCGGAGGAGGCGGTGCGGCTCCGGGACGGCGAGGCGTGG CAGCGGCTGCTGGACGCGGCCGGGCGCAACTCGCCCGAGGGCCGCGAGATCGAGAGGCTGGGCGCGGCGGCGTTT AGGAAGTAG |
| Transcript | >Hirsu2|9280 ATGGACTCTCTGCACGCGAGAGCTGACTGGGAGAGTGTCGGCGACAAGTGGTTCCGCAAGACGCAGCAGTACACG GCCGTCTTCGACCAGGACCTCGACCTCGACAGCTTCATCGTTGCCGGAGCGCCCTGCGCTGGAGCCCTAGCACTA TGGCGGGACGACACCAAGCTGCTGGCGCACCAGCCGGGCATGTCGACAAAGCCGTCGATCGACATCTACAGCCTG GCTGGCAAGAAGCTGCGCAGCATACCGTGGGATAAAACGGTCATCAGGGGCCTCGGATGGTCGGAGGAGGAATCT CTGCTCGTCGTGACGGCCGACGGCAACGTGCGCTGCTACGACCTCCAGGGCGACTTCAGCAACTTTTCTCTGGGC CACGGTGCCGATAACTACGGCGTCGAGTCGTGTCGATTCTACGATACCGGCATGGTCGCCCTCTTGGGCAACAAC TCGTTAGTGGCCGTCTCTTCCTACACCGAGCCTCGACCGAAGCTGCTGGCGGCCTGCCCCGACGGCACGATCCAC TCGTGGGCCATCATATCGCCCGACCACACGCTGTCGCGGTCGGTCGAGGCGGTGCTGAGCGTCGGGTCGACCGTC TACGTCGTCGACGGCACCGACTGCGAAGACAGGTTGCTGGACATCGGCCCCTTCAGCCACATCAGCGTGTCGCCA GACGGGCGATATGTGAACCTGTACGGAGCCAACGGCAAGGCGCACATCGTCTCGAGCGACTTCCAGGACAAGCTG TTCGAGCACAACTCGGACTCGCAGACGCCGCCCAAGTACGTCGAGTGGTGCGGCAGCGATGCGCTCATTGCGTGG GAGGACGAGGTGCACATCATCGGACCCGGGGACCAGTCCTCGACTTTCATCTACGAGAGCACCCGAGTCCACGTC GTCTCTGAATACGACGGTGCTCGGCTCATCACAAACGACTTTTGCGAGTTCCTGGAGAGGGTGCCCAACGACACG ATGGAGGTGCTGGGTCACGCGTCAGAGTCGTCGCCGGCGTCGATCCTCCTCGACGCAGTCGGCCAGCTGGAGCGC GAGTCGCCCAAGGCGGACGACTACATCCAGCTCATCCGGCCCAACCTGACCGAGGCAGTTGACACGTGCGTCAAT GCGGCCGGCCGCGAGTTCGACACGCGGTGGCAAAAGAGGCTGCTCAGGGCGGCGTCGTTTGGCAAATCGGTGCTC GACATCTACAACAGCGACGAGTTCGTCGACATGTGCGAGACGTTGCGCGTCCTCAACGCCGTCCGAGACTTCGAG ATCGGCATCCCGCTGTCGTACGAGCAGTACCACCGGCTGACGCCCGAGAGACTAATCCAGCGGCTGCTCAACCGC CACGACTACCTGCTCGCCCTCAAGATCGCGGGCCACCTGCGCCTGCCGTCGGACCGCATCTACGTGCACTGGGCC TGCTCCAAGGTCCGCGTCGGCGCCGAGGACGACGAGACGGTCTGCCGGCTGGTGGTGGAGAGGCTCTCGGGCAAG CCCGGCGTCTCGTTTGAGGAGATTGCGCGGGCGGCCTACCACGAGGGCCGGGCGCGGCTGGCGACGGAGCTGCTG AACCACGAGGCGCGCGGCGGGCGGCAGGTGCCTCTCCTGCTGGACATGGAGGAGGACGAGCTGGCGCTGGACAAG GCCATCGAGAGCGGGGACACGGACCTGATGCTGGTGGTGCTGATGCAGCTGAAGAAGAAGCTGCCGCTGGCGGCC TTCTTCCGCGTCATCAACGCCCGGCCGACGGCGACGGCGATGGTGGAGGCGGCGGCGGCGAGGGAGGGCGACAAC GCGCTACTCAAGGATCTATATTACCAGGACGACCGGCGGGCGGATGGGGCGAGCGTCTTCATCCGAGAGTCGCTC CGCCAGCCGGACGCGCGCACGGCGTCGGACAAGCTGGCGCTGGCGGCCAAGCTGCTGGCGGACACGAAGGAGTCG ACGGTCGAGCTGCACGCGCTCAAGGAGGCGACGGGCCTGCTGCGGATGCAGGAGGCGCTGAGCCGAGACCTGGCG GAGACGTTCACGGGGCTCAGCGTCAACGAGACGCTCTTCAAGCTGATCCGGCTCGGGCTCAACGGCCAGGCCAAG AAGGTGCAGAGCGAGTTCAAGGTGCCGGACAAGGTGGCCTGGTGGATCCGGCTCCGGGCCCTGGTGGCGAAGCGG GACTGGAACGAGATTGAGGAGATGGCCAAGACGAAGAAAAGCCCGATCGGGTGGGAGCCCTTCTTCAACCTCACG CTGCAGGCGGGCAACCCGCGGCTGGCGGCCGTCTTCATCCCCAAGTGCACGGGGCTGGCGGCGGGCGAGAGCATC AGCATGTACGACAAGTGCGGACTGCGCGTCCGGGCGGCGGAGGAGGCGGTGCGGCTCCGGGACGGCGAGGCGTGG CAGCGGCTGCTGGACGCGGCCGGGCGCAACTCGCCCGAGGGCCGCGAGATCGAGAGGCTGGGCGCGGCGGCGTTT AGGAAGTAG |
| Gene | >Hirsu2|9280 ATGGACTCTCTGCACGCGAGAGCTGACTGGGAGAGTGTCGGCGACAAGTGGTTCCGCAAGACGCAGCAGTACACG GCCGTCTTCGACCAGGACCTCGACCTCGACAGCTTCATCGTTGCCGGAGCGCCCTGCGCTGGAGCCCTAGGTATC GTCCTCTTCGAGCTGCCTCGCGAGTCCGGAGGCGAGGCTTCGAGAAGGAAGAATGGCTGACGGGTGACAGCACTA TGGCGGGACGACACCAAGCTGCTGGCGCACCAGCCGGGCATGTCGACAAAGCCGTCGATCGACATCTACAGCCTG GCTGGCAAGAAGCTGCGCAGCATACCGTGGGATAAAACGGTCATCAGGGGCCTCGGATGGTCGGAGGAGGAATCT CTGCTCGTCGTGACGGCCGACGGCAACGTGCGCTGCTACGACCTCCAGGGCGACTTCAGCAACTTTTCTCTGGGC CACGGTGCCGATAACTACGGCGTCGAGTCGTGTCGGTACGCTGGTGCGGCTCGCGAGGCCCGGGATCTCGGCTCA CGCTTCCCAGATTCTACGATACCGGCATGGTCGCCCTCTTGGGCAACAACTCGTTAGTGGCCGTCTCTTCCTACA CCGAGCCTCGACCGAAGCTGCTGGCGGCCTGCCCCGACGGCACGATCCACTCGTGGGCCATCATATCGCCCGACC ACACGCTGTCGCGGTCGGTCGAGGCGGTGCTGAGCGTCGGGTCGACCGTCTACGTCGTCGACGGCACCGACTGCG AAGACAGGTTGCTGGACATCGGCCCCTTCAGCCACATCAGCGTGTCGCCAGACGGGCGATATGTGAACCTGTACG GAGCCAACGGCAAGGCGCACATCGTCTCGAGCGACTTCCAGGACAAGCTGTTCGAGCACAACTCGGACTCGCAGA CGCCGCCCAAGTACGTCGAGTGGTGCGGCAGCGATGCGCTCATTGCGTGGGAGGACGAGGTGCACATCATCGGAC CCGGGGACCAGTCCTCGACTTTCATCTACGAGAGCACCCGAGTCCACGTCGTCTCTGGTGAGCAGACTTGGCCCC CTCCCCCATCGCCCCGTCGCCGGCCGTAATGCGTCTGTTGACCCGAGGTAGAATACGACGGTGCTCGGCTCATCA CAAACGACTTTTGCGAGTTCCTGGAGAGGGTGCCCAACGACACGATGGAGGTGCTGGGTCACGCGTCAGAGTCGT CGCCGGCGTCGATCCTCCTCGACGCAGTCGGCCAGCTGGAGCGCGAGTCGCCCAAGGCGGACGACTACATCCAGC TCATCCGGCCCAACCTGACCGAGGCAGTTGACACGTGCGTCAATGCGGCCGGCCGCGAGTTCGACACGCGGTGGC AAAAGAGGCTGCTCAGGGCGGCGTCGTTTGGCAAATCGGTGCTCGACATCTACAACAGCGACGAGTTCGTCGACA TGTGCGAGACGTTGCGCGTCCTCAACGCCGTCCGAGACTTCGAGATCGGCATCCCGCTGTCGTACGAGCAGTACC ACCGGCTGACGCCCGAGAGACTAATCCAGCGGCTGCTCAACCGCCACGACTACCTGCTCGCCCTCAAGATCGCGG GCCACCTGCGCCTGCCGTCGGACCGCATCTACGTGCACTGGGCCTGCTCCAAGGTCCGCGTCGGCGCCGAGGACG ACGAGACGGTCTGCCGGCTGGTGGTGGAGAGGCTCTCGGGCAAGCCCGGCGTCTCGTTTGAGGAGATTGCGCGGG CGGCCTACCACGAGGGCCGGGCGCGGCTGGCGACGGAGCTGCTGAACCACGAGGCGCGCGGCGGGCGGCAGGTGC CTCTCCTGCTGGACATGGAGGAGGACGAGCTGGCGCTGGACAAGGCCATCGAGAGCGGGGACACGGACCTGATGC TGGTGGTGCTGATGCAGCTGAAGAAGAAGCTGCCGCTGGCGGCCTTCTTCCGCGTCATCAACGCCCGGCCGACGG CGACGGCGATGGTGGAGGCGGCGGCGGCGAGGGAGGGCGACAACGCGCTACTCAAGGATCTATATTACCAGGACG ACCGGCGGGCGGATGGGGCGAGCGTCTTCATCCGAGAGTCGCTCCGCCAGCCGGACGCGCGCACGGCGTCGGACA AGCTGGCGCTGGCGGCCAAGCTGCTGGCGGACACGAAGGAGTCGACGGTCGAGCTGCACGCGCTCAAGGAGGCGA CGGGCCTGCTGCGGATGCAGGAGGCGCTGAGCCGAGACCTGGCGGAGACGTTCACGGGGCTCAGCGTCAACGAGA CGCTCTTCAAGCTGATCCGGCTCGGGCTCAACGGCCAGGCCAAGAAGGTGCAGAGCGAGTTCAAGGTGCCGGACA AGGTGGCCTGGTGGATCCGGTACGTGAGAGCCCGAGGACAAGGGAGGGAGAGAGAGAGGCGGCCCAAGCAGGCCG GACTGCAGCAACCGACTGACATGCCTCTGCAGGCTCCGGGCCCTGGTGGCGAAGCGGGACTGGAACGAGATTGAG GAGATGGCCAAGACGAAGAAAAGCCCGATCGGGTGGGAGGTGAGCGAAGGCGAAGGTCCCGCGAGACGTGCCGTT TTTGGCTGACGAAACGAAACCACACCCGCCCCCAGCCCTTCTTCAACCTCACGCTGCAGGCGGGCAACCCGCGGC TGGCGGCCGTCTTCATCCCCAAGTGCACGGGGCTGGCGGCGGGCGAGAGCATCAGCATGTACGACAAGTGCGGAC TGCGCGTCCGGGCGGCGGAGGAGGCGGTGCGGCTCCGGGACGGCGAGGCGTGGCAGCGGCTGCTGGACGCGGCCG GGCGCAACTCGCCCGAGGGCCGCGAGATCGAGAGGCTGGGCGCGGCGGCGTTTAGGAAGTAG |