Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|9191
Gene name
LocationContig_650:9743..10393
Strand+
Gene length (bp)650
Transcript length (bp)576
Coding sequence length (bp)576
Protein length (aa) 192

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 3.6E-08 62 101
PF01476 LysM LysM domain 2.6E-04 143 182

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 36 191 5.0E-43
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 35 191 1.0E-40
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 36 188 1.0E-39
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 1 191 7.0E-20
sp|D4AZ68|LYSM3_ARTBC LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 58 189 7.0E-17
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 36 191 5.0E-43
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 35 191 1.0E-40
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 36 188 1.0E-39
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 1 191 7.0E-20
sp|D4AZ68|LYSM3_ARTBC LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 58 189 7.0E-17
sp|D4B4P8|LYSM2_ARTBC LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 66 191 6.0E-16
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 137 189 5.0E-10
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 54 108 2.0E-09
sp|D4AZ68|LYSM3_ARTBC LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 47 108 6.0E-09
sp|D4AVW3|LYSM5_ARTBC LysM domain-containing protein ARB_00327 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_00327 PE=3 SV=2 139 189 1.0E-07
sp|D4AVW3|LYSM5_ARTBC LysM domain-containing protein ARB_00327 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_00327 PE=3 SV=2 49 114 7.0E-07
sp|D4B4Q2|LYSM4_ARTBC LysM domain-containing protein ARB_03442 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03442 PE=3 SV=2 136 187 2.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|9191
MVNLQSGLLLLGGAQAALGFLPGPRDAGAAEHEAASPVGEAPGAVTPQPALPNMAKDCTRFHLVQSGDTCWQIAA
RYGVETAQFLRLNPSAGPGCRSLWAGYYSCVGVKAKRPTRTEVSRRAAGVETPQPVQPHMVANCNKFHLVRAGDT
CGLIAALYAVSVDDVILWNPDAGADCTTLWAGYYACVGIGG*
Coding >Hirsu2|9191
ATGGTCAATCTCCAAAGCGGCCTGTTGCTCCTCGGGGGCGCTCAGGCGGCGCTCGGCTTCCTCCCCGGCCCGCGC
GACGCCGGGGCGGCCGAGCACGAAGCGGCGTCTCCGGTCGGCGAGGCTCCCGGAGCCGTGACGCCGCAGCCGGCC
CTGCCGAACATGGCCAAGGACTGCACGCGCTTCCACCTGGTCCAGTCCGGGGACACGTGCTGGCAGATCGCGGCG
CGGTACGGCGTCGAGACGGCGCAGTTCCTGCGGTTGAACCCCAGCGCCGGGCCCGGGTGCCGCTCGCTCTGGGCC
GGCTACTACTCGTGCGTCGGCGTCAAGGCCAAGAGGCCGACCAGGACGGAGGTGTCGAGGCGCGCGGCCGGCGTC
GAGACGCCGCAGCCGGTCCAGCCGCACATGGTGGCCAACTGCAACAAGTTCCATCTGGTCCGGGCCGGCGACACG
TGCGGCCTGATCGCGGCCTTGTACGCCGTCTCCGTCGACGACGTCATTCTCTGGAACCCCGACGCCGGCGCGGAC
TGCACGACGCTCTGGGCCGGCTACTACGCCTGCGTCGGCATCGGCGGCTGA
Transcript >Hirsu2|9191
ATGGTCAATCTCCAAAGCGGCCTGTTGCTCCTCGGGGGCGCTCAGGCGGCGCTCGGCTTCCTCCCCGGCCCGCGC
GACGCCGGGGCGGCCGAGCACGAAGCGGCGTCTCCGGTCGGCGAGGCTCCCGGAGCCGTGACGCCGCAGCCGGCC
CTGCCGAACATGGCCAAGGACTGCACGCGCTTCCACCTGGTCCAGTCCGGGGACACGTGCTGGCAGATCGCGGCG
CGGTACGGCGTCGAGACGGCGCAGTTCCTGCGGTTGAACCCCAGCGCCGGGCCCGGGTGCCGCTCGCTCTGGGCC
GGCTACTACTCGTGCGTCGGCGTCAAGGCCAAGAGGCCGACCAGGACGGAGGTGTCGAGGCGCGCGGCCGGCGTC
GAGACGCCGCAGCCGGTCCAGCCGCACATGGTGGCCAACTGCAACAAGTTCCATCTGGTCCGGGCCGGCGACACG
TGCGGCCTGATCGCGGCCTTGTACGCCGTCTCCGTCGACGACGTCATTCTCTGGAACCCCGACGCCGGCGCGGAC
TGCACGACGCTCTGGGCCGGCTACTACGCCTGCGTCGGCATCGGCGGCTGA
Gene >Hirsu2|9191
ATGGTCAATCTCCAAAGCGGCCTGTTGCTCCTCGGGGGCGCTCAGGCGGCGCTCGGCTTCCTCCCCGGCCCGCGC
GACGCCGGGGCGGCCGAGCACGAAGCGGCGTCTCCGGTCGGCGAGGCTCCCGGTGCGTCACACGGACACGGGGCA
TGACGACATCTCCCTCTCCCTCTCCCTCTCTGGGCTGACCGGCGGCCGTAGGAGCCGTGACGCCGCAGCCGGCCC
TGCCGAACATGGCCAAGGACTGCACGCGCTTCCACCTGGTCCAGTCCGGGGACACGTGCTGGCAGATCGCGGCGC
GGTACGGCGTCGAGACGGCGCAGTTCCTGCGGTTGAACCCCAGCGCCGGGCCCGGGTGCCGCTCGCTCTGGGCCG
GCTACTACTCGTGCGTCGGCGTCAAGGCCAAGAGGCCGACCAGGACGGAGGTGTCGAGGCGCGCGGCCGGCGTCG
AGACGCCGCAGCCGGTCCAGCCGCACATGGTGGCCAACTGCAACAAGTTCCATCTGGTCCGGGCCGGCGACACGT
GCGGCCTGATCGCGGCCTTGTACGCCGTCTCCGTCGACGACGTCATTCTCTGGAACCCCGACGCCGGCGCGGACT
GCACGACGCTCTGGGCCGGCTACTACGCCTGCGTCGGCATCGGCGGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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