© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9185 |
| Gene name | |
| Location | Contig_65:31604..32132 |
| Strand | + |
| Gene length (bp) | 528 |
| Transcript length (bp) | 528 |
| Coding sequence length (bp) | 528 |
| Protein length (aa) | 176 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12296 | HsbA | Hydrophobic surface binding protein A | 4.4E-15 | 23 | 140 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0663 | 0.0483 | 0.9491 | 0.0794 | 0.0379 | 0.013 | 0.1745 | 0.1427 | 0.0655 | 0.0034 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.694914 |
| Orthofinder run ID | 4 |
| Orthogroup | 6308 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9185 MHVKALSALTVSVLAVTVSGRVAVQDSINKITENMAATERSISTWQGGLLTVAPVLLRANNLLNSMQDGVKATAD SAELSGPQARAVLDKVEQSGKAARRLTDKVVDAKAKFNQIVLGDVIVSGLMKAYGDAAQDLGTALGNKLPSSKER VATSIREIQDGLAKASKAYGRRTAQ* |
| Coding | >Hirsu2|9185 ATGCACGTCAAGGCCCTCTCCGCGCTCACCGTCTCGGTCCTGGCCGTCACCGTCTCCGGCCGCGTTGCGGTCCAG GACAGCATCAACAAAATCACCGAAAACATGGCCGCCACCGAGCGGAGCATCAGCACCTGGCAGGGCGGCCTCTTG ACCGTGGCCCCCGTCCTGCTACGGGCCAACAACCTCCTCAACAGCATGCAGGACGGCGTCAAGGCCACCGCTGAC TCGGCCGAGCTCAGCGGCCCGCAGGCCCGGGCGGTGCTGGACAAGGTCGAGCAGAGCGGCAAGGCGGCCCGCCGT CTCACGGACAAGGTTGTCGACGCCAAGGCCAAGTTCAACCAGATCGTCCTGGGCGATGTCATAGTCTCCGGCCTC ATGAAGGCGTACGGCGACGCTGCCCAGGACTTGGGCACGGCCCTGGGCAACAAGTTGCCCAGCTCCAAGGAGCGT GTTGCGACCTCGATTCGTGAGATCCAGGATGGCCTTGCGAAGGCGTCTAAGGCTTACGGCCGTCGAACCGCCCAG TGA |
| Transcript | >Hirsu2|9185 ATGCACGTCAAGGCCCTCTCCGCGCTCACCGTCTCGGTCCTGGCCGTCACCGTCTCCGGCCGCGTTGCGGTCCAG GACAGCATCAACAAAATCACCGAAAACATGGCCGCCACCGAGCGGAGCATCAGCACCTGGCAGGGCGGCCTCTTG ACCGTGGCCCCCGTCCTGCTACGGGCCAACAACCTCCTCAACAGCATGCAGGACGGCGTCAAGGCCACCGCTGAC TCGGCCGAGCTCAGCGGCCCGCAGGCCCGGGCGGTGCTGGACAAGGTCGAGCAGAGCGGCAAGGCGGCCCGCCGT CTCACGGACAAGGTTGTCGACGCCAAGGCCAAGTTCAACCAGATCGTCCTGGGCGATGTCATAGTCTCCGGCCTC ATGAAGGCGTACGGCGACGCTGCCCAGGACTTGGGCACGGCCCTGGGCAACAAGTTGCCCAGCTCCAAGGAGCGT GTTGCGACCTCGATTCGTGAGATCCAGGATGGCCTTGCGAAGGCGTCTAAGGCTTACGGCCGTCGAACCGCCCAG TGA |
| Gene | >Hirsu2|9185 ATGCACGTCAAGGCCCTCTCCGCGCTCACCGTCTCGGTCCTGGCCGTCACCGTCTCCGGCCGCGTTGCGGTCCAG GACAGCATCAACAAAATCACCGAAAACATGGCCGCCACCGAGCGGAGCATCAGCACCTGGCAGGGCGGCCTCTTG ACCGTGGCCCCCGTCCTGCTACGGGCCAACAACCTCCTCAACAGCATGCAGGACGGCGTCAAGGCCACCGCTGAC TCGGCCGAGCTCAGCGGCCCGCAGGCCCGGGCGGTGCTGGACAAGGTCGAGCAGAGCGGCAAGGCGGCCCGCCGT CTCACGGACAAGGTTGTCGACGCCAAGGCCAAGTTCAACCAGATCGTCCTGGGCGATGTCATAGTCTCCGGCCTC ATGAAGGCGTACGGCGACGCTGCCCAGGACTTGGGCACGGCCCTGGGCAACAAGTTGCCCAGCTCCAAGGAGCGT GTTGCGACCTCGATTCGTGAGATCCAGGATGGCCTTGCGAAGGCGTCTAAGGCTTACGGCCGTCGAACCGCCCAG TGA |