Protein ID | Hirsu2|9183 |
Gene name | |
Location | Contig_65:27927..28564 |
Strand | + |
Gene length (bp) | 637 |
Transcript length (bp) | 420 |
Coding sequence length (bp) | 420 |
Protein length (aa) | 140 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08881 | CVNH | CVNH domain | 5.0E-15 | 32 | 131 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.0967 | 0.054 | 0.9567 | 0.0551 | 0.0827 | 0.0348 | 0.1487 | 0.2463 | 0.1181 | 0.0162 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 18 | 0.999811 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 5 | 27 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 10838 |
Change Orthofinder run |
Species | Protein ID |
---|---|
Ophiocordyceps subramaniannii | Hirsu2|9183 (this protein) |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|9183 MKVHVVSSLVVLVPLALAVPQLLPMFPRRGGFYETCLRFWLKEARRNLLEADCHNDTGKMVRSTLDLNQCLAFRK GLLKGAPYGEFSEHCDKTSCTLKSTSYQCKCNIGHKAWRVSAVDLNEVVSNKNGFLLCYGLEGD* |
Coding | >Hirsu2|9183 ATGAAAGTCCATGTCGTCTCGTCACTCGTCGTGCTCGTGCCTCTGGCGCTGGCCGTGCCCCAGCTGCTGCCCATG TTCCCGAGACGGGGCGGCTTCTACGAAACCTGCCTGCGTTTCTGGCTGAAGGAAGCCCGTCGTAACCTCCTGGAA GCCGATTGCCACAACGACACGGGCAAGATGGTACGCAGCACTCTCGACCTTAATCAATGCCTGGCCTTCCGGAAA GGCCTCTTGAAGGGCGCTCCATACGGCGAATTCTCCGAGCATTGTGACAAGACCAGCTGCACATTGAAGAGCACC AGTTATCAGTGCAAGTGCAACATTGGCCACAAGGCCTGGAGGGTCTCTGCCGTTGATCTCAACGAGGTGGTCTCC AACAAGAACGGCTTCCTGCTATGCTACGGCTTAGAAGGGGATTAA |
Transcript | >Hirsu2|9183 ATGAAAGTCCATGTCGTCTCGTCACTCGTCGTGCTCGTGCCTCTGGCGCTGGCCGTGCCCCAGCTGCTGCCCATG TTCCCGAGACGGGGCGGCTTCTACGAAACCTGCCTGCGTTTCTGGCTGAAGGAAGCCCGTCGTAACCTCCTGGAA GCCGATTGCCACAACGACACGGGCAAGATGGTACGCAGCACTCTCGACCTTAATCAATGCCTGGCCTTCCGGAAA GGCCTCTTGAAGGGCGCTCCATACGGCGAATTCTCCGAGCATTGTGACAAGACCAGCTGCACATTGAAGAGCACC AGTTATCAGTGCAAGTGCAACATTGGCCACAAGGCCTGGAGGGTCTCTGCCGTTGATCTCAACGAGGTGGTCTCC AACAAGAACGGCTTCCTGCTATGCTACGGCTTAGAAGGGGATTAA |
Gene | >Hirsu2|9183 ATGAAAGTCCATGTCGTCTCGTCACTCGTCGTGCTCGTGCCTCTGGCGCTGGCCGTGCCCCAGCTGCTGCCCATG TTCCCGAGACGGGGCGGCTTCTACGAAACCTGCCTGCGTTTCTGGCTGAAGGAAGCCCGTCGTAACCTCCTGGAA GCCGATTGCCACAACGACACGGGCAAGATGGTACGCAGCACTCTCGACCTTAATCAATGCCTGGCCTTCCGGAAA GGCCTCTTGAAGGGCGCTCCATAGTAAGTTGGCCCGAAGACGAGGTTTTGCCTGCTCCGAGCAACTGGGGACGCA GAGAAGGAGAACGGGCCTGGAACGCAGAGCTCGGCCGGGGGCTCAACTCAGCTGCCGGACGCGCATGCTGACAAT GGGCGATTTCCAACCTCTAGCGGCGAATTCTCCGAGCATTGTGACAAGACCAGCTGCACATTGAAGAGCACCAGT TATCAGTGCAAGTGCAACATTGGCCACAAGGCCTGGAGGGTCTCTGCCGTTGATCTCAGTACGTCGCCCCGACGA CACTTGATATTGAGGGCTTGGTCATCCCGCTGACCGGCGAGATGAGATTCCAGACGAGGTGGTCTCCAACAAGAA CGGCTTCCTGCTATGCTACGGCTTAGAAGGGGATTAA |