Protein ID | Hirsu2|9181 |
Gene name | |
Location | Contig_65:18984..20369 |
Strand | + |
Gene length (bp) | 1385 |
Transcript length (bp) | 1230 |
Coding sequence length (bp) | 1230 |
Protein length (aa) | 410 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11327 | Egh16-like | Egh16-like virulence factor | 2.5E-52 | 20 | 195 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1092 | 0.0956 | 0.9772 | 0.0813 | 0.0788 | 0.0068 | 0.0686 | 0.0511 | 0.1353 | 0.0037 |
Orthofinder run ID | 4 |
Orthogroup | 421 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|9181 MACLTSSTLLQFLMYSTALGHGVILAAQGLQGSPASVGFQVDPSIARDCTGISPCQQDTTIIRNTEIDDNVVNQC GRTQLKGNIDVGENTENALAAGQVTQVKAGSQIELTMHQVNADGAGPYECDLDEASNTGIISQNLSVLNNVPGIN GLSQAKTEAFKMTVQMPDQLKCTGASTGNVCTVRCRNNAAAGPFGGCFAVQQVDTEPTKNTPANIKTANSLQDIT KQVAKNQKDLPTAVKANENAHADQSQQNLEVVDALLQNKVVTQQFPQQTQDVALGRNNQNNQNNQDNQNNQQNNQ NNQQNNQNNRAGAKGRNRNAGGGGGGGGGNVGGARSGGGGGGQQQQAKSRDGKANKQGAGAGASAKQQKQAKSRN PAQAQAASAQGQSQAGASGQRGQRNQRRRLHIKA* |
Coding | >Hirsu2|9181 ATGGCCTGCCTCACCTCGTCCACTCTTCTACAATTCTTAATGTATTCAACGGCCCTGGGCCATGGAGTGATCCTG GCAGCTCAGGGGCTGCAGGGCTCGCCGGCCAGCGTCGGCTTCCAGGTCGATCCCTCCATCGCGCGGGACTGCACT GGCATCAGCCCCTGTCAGCAGGACACGACCATCATCCGCAACACCGAGATCGATGACAACGTCGTCAACCAGTGC GGCCGCACACAGCTCAAGGGCAACATCGACGTGGGCGAGAACACGGAGAACGCGCTGGCGGCCGGCCAGGTGACC CAGGTCAAGGCCGGCAGCCAGATCGAGTTGACGATGCACCAGGTCAACGCCGACGGCGCCGGCCCTTACGAGTGC GATCTGGACGAAGCCAGCAACACCGGCATCATCTCGCAGAACCTATCTGTTTTGAACAATGTGCCGGGAATCAAC GGCCTCTCCCAGGCCAAGACGGAGGCCTTCAAGATGACGGTCCAGATGCCGGACCAACTTAAATGCACCGGCGCA TCTACCGGCAACGTCTGCACCGTCCGGTGCCGCAACAATGCCGCGGCCGGCCCGTTCGGCGGCTGCTTCGCCGTG CAGCAGGTCGACACGGAGCCCACGAAAAACACGCCGGCCAACATCAAGACGGCCAACAGCCTCCAGGATATCACG AAGCAGGTCGCGAAGAACCAGAAAGACCTGCCGACGGCCGTCAAGGCCAACGAGAATGCCCATGCGGACCAGTCC CAGCAGAATCTCGAGGTGGTCGATGCCCTTCTGCAGAATAAAGTCGTGACCCAGCAGTTCCCCCAGCAAACGCAG GACGTGGCCCTGGGCCGGAACAACCAAAACAACCAAAACAACCAGGACAACCAGAACAACCAGCAGAACAACCAG AACAACCAGCAGAACAACCAGAACAACCGTGCCGGTGCCAAGGGACGGAATCGCAACGCGGGCGGCGGCGGCGGC GGCGGCGGCGGCAACGTCGGTGGAGCTCGCAGCGGAGGCGGAGGCGGAGGCCAGCAACAGCAAGCCAAGAGCCGC GACGGCAAGGCTAACAAGCAAGGCGCCGGGGCCGGTGCCAGCGCCAAGCAGCAGAAGCAAGCGAAATCCCGAAAC CCGGCTCAAGCTCAAGCGGCCTCTGCCCAAGGCCAGTCGCAGGCGGGCGCCTCCGGCCAGCGCGGCCAGCGTAAC CAGCGGAGGCGCCTTCACATCAAGGCCTAG |
Transcript | >Hirsu2|9181 ATGGCCTGCCTCACCTCGTCCACTCTTCTACAATTCTTAATGTATTCAACGGCCCTGGGCCATGGAGTGATCCTG GCAGCTCAGGGGCTGCAGGGCTCGCCGGCCAGCGTCGGCTTCCAGGTCGATCCCTCCATCGCGCGGGACTGCACT GGCATCAGCCCCTGTCAGCAGGACACGACCATCATCCGCAACACCGAGATCGATGACAACGTCGTCAACCAGTGC GGCCGCACACAGCTCAAGGGCAACATCGACGTGGGCGAGAACACGGAGAACGCGCTGGCGGCCGGCCAGGTGACC CAGGTCAAGGCCGGCAGCCAGATCGAGTTGACGATGCACCAGGTCAACGCCGACGGCGCCGGCCCTTACGAGTGC GATCTGGACGAAGCCAGCAACACCGGCATCATCTCGCAGAACCTATCTGTTTTGAACAATGTGCCGGGAATCAAC GGCCTCTCCCAGGCCAAGACGGAGGCCTTCAAGATGACGGTCCAGATGCCGGACCAACTTAAATGCACCGGCGCA TCTACCGGCAACGTCTGCACCGTCCGGTGCCGCAACAATGCCGCGGCCGGCCCGTTCGGCGGCTGCTTCGCCGTG CAGCAGGTCGACACGGAGCCCACGAAAAACACGCCGGCCAACATCAAGACGGCCAACAGCCTCCAGGATATCACG AAGCAGGTCGCGAAGAACCAGAAAGACCTGCCGACGGCCGTCAAGGCCAACGAGAATGCCCATGCGGACCAGTCC CAGCAGAATCTCGAGGTGGTCGATGCCCTTCTGCAGAATAAAGTCGTGACCCAGCAGTTCCCCCAGCAAACGCAG GACGTGGCCCTGGGCCGGAACAACCAAAACAACCAAAACAACCAGGACAACCAGAACAACCAGCAGAACAACCAG AACAACCAGCAGAACAACCAGAACAACCGTGCCGGTGCCAAGGGACGGAATCGCAACGCGGGCGGCGGCGGCGGC GGCGGCGGCGGCAACGTCGGTGGAGCTCGCAGCGGAGGCGGAGGCGGAGGCCAGCAACAGCAAGCCAAGAGCCGC GACGGCAAGGCTAACAAGCAAGGCGCCGGGGCCGGTGCCAGCGCCAAGCAGCAGAAGCAAGCGAAATCCCGAAAC CCGGCTCAAGCTCAAGCGGCCTCTGCCCAAGGCCAGTCGCAGGCGGGCGCCTCCGGCCAGCGCGGCCAGCGTAAC CAGCGGAGGCGCCTTCACATCAAGGCCTAG |
Gene | >Hirsu2|9181 ATGGCCTGCCTCACCTCGTCCACTCTTCTACAATTCTTAATGTATTCAACGGCCCTGGGCCATGGAGTGATCCTG GCAGCTCAGGGGCTGCAGGGCTCGCCGGCCAGCGTCGGCTTCCAGGTCGATCCCTCCATCGCGCGGGACTGCACT GGCATCAGCCCCTGTCAGCAGGACACGACCATCATCCGCAACACCGAGATCGATGACAACGTCGTCAACCAGTGC GGCCGCACACAGCTCAAGGGCAACATCGACGTGGGCGAGAACACGGAGAACGCGCTGGCGGCCGGCCAGGTGACC CAGGTCAAGGCCGGCAGCCAGATCGAGTTGACGATGCACCAGGTCAACGCCGACGGCGCCGGCCCTTACGAGTGC GATCTGGACGAAGCCAGCAACACCGGCATCATCTCGCAGGTAGGCACGAGACTCGCTCTCCCTGTCCCGGAGTCG GGGAGCACGGCTGACTGGACCCGGTCGTCTTGCCAGAACCTATCTGTTTTGAACAATGTGCCGGGAATCAACGGC CTCTCCCAGGCCAAGACGGAGGCCTTCAAGATGACGGTCCAGATGCCGGACCAACTTAAATGCACCGGCGGTGAG TCTCCAGCGTGCCTTGTGATGCTATGAAATTGAGGCAACGGCAACTTACGTCTAACACTCCCTTTCCCCCCTCAC CAGCATCTACCGGCAACGTCTGCACCGTCCGGTGCCGCAACAATGCCGCGGCCGGCCCGTTCGGCGGCTGCTTCG CCGTGCAGCAGGTCGACACGGAGCCCACGAAAAACACGCCGGCCAACATCAAGACGGCCAACAGCCTCCAGGATA TCACGAAGCAGGTCGCGAAGAACCAGAAAGACCTGCCGACGGCCGTCAAGGCCAACGAGAATGCCCATGCGGACC AGTCCCAGCAGAATCTCGAGGTGGTCGATGCCCTTCTGCAGAATAAAGTCGTGACCCAGCAGTTCCCCCAGCAAA CGCAGGACGTGGCCCTGGGCCGGAACAACCAAAACAACCAAAACAACCAGGACAACCAGAACAACCAGCAGAACA ACCAGAACAACCAGCAGAACAACCAGAACAACCGTGCCGGTGCCAAGGGACGGAATCGCAACGCGGGCGGCGGCG GCGGCGGCGGCGGCGGCAACGTCGGTGGAGCTCGCAGCGGAGGCGGAGGCGGAGGCCAGCAACAGCAAGCCAAGA GCCGCGACGGCAAGGCTAACAAGCAAGGCGCCGGGGCCGGTGCCAGCGCCAAGCAGCAGAAGCAAGCGAAATCCC GAAACCCGGCTCAAGCTCAAGCGGCCTCTGCCCAAGGCCAGTCGCAGGCGGGCGCCTCCGGCCAGCGCGGCCAGC GTAACCAGCGGAGGCGCCTTCACATCAAGGCCTAG |