© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9157 |
| Gene name | |
| Location | Contig_647:3240..4066 |
| Strand | - |
| Gene length (bp) | 826 |
| Transcript length (bp) | 636 |
| Coding sequence length (bp) | 636 |
| Protein length (aa) | 212 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01105 | EMP24_GP25L | emp24/gp25L/p24 family/GOLD | 2.0E-47 | 22 | 204 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13770|YE98_SCHPO | Uncharacterized membrane protein C17A5.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A5.08 PE=3 SV=1 | 1 | 209 | 4.0E-57 |
| sp|Q12403|ERP3_YEAST | Protein ERP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERP3 PE=1 SV=1 | 20 | 211 | 4.0E-31 |
| sp|Q12450|ERP4_YEAST | Protein ERP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERP4 PE=1 SV=1 | 27 | 211 | 1.0E-25 |
| sp|Q769F9|TMEDA_DICDI | Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1 | 13 | 207 | 4.0E-25 |
| sp|P39704|ERP2_YEAST | Protein ERP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERP2 PE=1 SV=1 | 1 | 211 | 5.0E-25 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13770|YE98_SCHPO | Uncharacterized membrane protein C17A5.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A5.08 PE=3 SV=1 | 1 | 209 | 4.0E-57 |
| sp|Q12403|ERP3_YEAST | Protein ERP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERP3 PE=1 SV=1 | 20 | 211 | 4.0E-31 |
| sp|Q12450|ERP4_YEAST | Protein ERP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERP4 PE=1 SV=1 | 27 | 211 | 1.0E-25 |
| sp|Q769F9|TMEDA_DICDI | Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1 | 13 | 207 | 4.0E-25 |
| sp|P39704|ERP2_YEAST | Protein ERP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERP2 PE=1 SV=1 | 1 | 211 | 5.0E-25 |
| sp|O17528|TMED2_CAEEL | Suppressor/enhancer of lin-12 protein 9 OS=Caenorhabditis elegans GN=sel-9 PE=1 SV=1 | 14 | 204 | 3.0E-23 |
| sp|Q9Y3B3|TMED7_HUMAN | Transmembrane emp24 domain-containing protein 7 OS=Homo sapiens GN=TMED7 PE=1 SV=2 | 20 | 207 | 9.0E-22 |
| sp|D3ZTX0|TMED7_RAT | Transmembrane emp24 domain-containing protein 7 OS=Rattus norvegicus GN=Tmed7 PE=1 SV=1 | 23 | 207 | 3.0E-21 |
| sp|Q54BN0|TMEDB_DICDI | Transmembrane emp24 domain-containing protein B OS=Dictyostelium discoideum GN=empB PE=3 SV=1 | 20 | 211 | 8.0E-21 |
| sp|A7SXK3|TMED_NEMVE | Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1 | 28 | 207 | 6.0E-20 |
| sp|Q63524|TMED2_RAT | Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1 | 27 | 207 | 1.0E-19 |
| sp|Q9R0Q3|TMED2_MOUSE | Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1 | 27 | 207 | 1.0E-19 |
| sp|Q15363|TMED2_HUMAN | Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1 | 27 | 207 | 1.0E-19 |
| sp|P49020|TMED2_CRIGR | Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus GN=TMED2 PE=1 SV=1 | 27 | 207 | 1.0E-19 |
| sp|Q28BQ6|TMED1_XENTR | Transmembrane emp24 domain-containing protein 1 OS=Xenopus tropicalis GN=tmed1 PE=2 SV=1 | 6 | 208 | 2.0E-17 |
| sp|Q78IS1|TMED3_MOUSE | Transmembrane emp24 domain-containing protein 3 OS=Mus musculus GN=Tmed3 PE=1 SV=1 | 15 | 207 | 4.0E-16 |
| sp|Q6AY25|TMED3_RAT | Transmembrane emp24 domain-containing protein 3 OS=Rattus norvegicus GN=Tmed3 PE=1 SV=1 | 15 | 207 | 5.0E-16 |
| sp|Q9Y3Q3|TMED3_HUMAN | Transmembrane emp24 domain-containing protein 3 OS=Homo sapiens GN=TMED3 PE=1 SV=1 | 23 | 207 | 5.0E-16 |
| sp|Q9Y3A6|TMED5_HUMAN | Transmembrane emp24 domain-containing protein 5 OS=Homo sapiens GN=TMED5 PE=1 SV=1 | 7 | 208 | 1.0E-14 |
| sp|Q6AXN3|TMED5_RAT | Transmembrane emp24 domain-containing protein 5 OS=Rattus norvegicus GN=Tmed5 PE=2 SV=1 | 7 | 208 | 1.0E-14 |
| sp|Q9CXE7|TMED5_MOUSE | Transmembrane emp24 domain-containing protein 5 OS=Mus musculus GN=Tmed5 PE=1 SV=1 | 7 | 208 | 2.0E-14 |
| sp|Q9I7K5|TMEDE_DROME | Transmembrane emp24 domain-containing protein eca OS=Drosophila melanogaster GN=eca PE=2 SV=2 | 1 | 207 | 4.0E-14 |
| sp|Q5R809|TMED5_PONAB | Transmembrane emp24 domain-containing protein 5 OS=Pongo abelii GN=TMED5 PE=2 SV=1 | 7 | 208 | 4.0E-14 |
| sp|B4QWH9|TMEDE_DROSI | Transmembrane emp24 domain-containing protein eca OS=Drosophila simulans GN=eca PE=3 SV=1 | 1 | 207 | 6.0E-14 |
| sp|B4HJV5|TMEDE_DROSE | Transmembrane emp24 domain-containing protein eca OS=Drosophila sechellia GN=eca PE=3 SV=1 | 1 | 207 | 8.0E-14 |
| sp|B3NZM5|TMEDE_DROER | Transmembrane emp24 domain-containing protein eca OS=Drosophila erecta GN=eca PE=3 SV=1 | 1 | 207 | 3.0E-13 |
| sp|B4PVC6|TMEDE_DROYA | Transmembrane emp24 domain-containing protein eca OS=Drosophila yakuba GN=eca PE=3 SV=1 | 1 | 207 | 3.0E-13 |
| sp|B4NKL0|TMEDE_DROWI | Transmembrane emp24 domain-containing protein eca OS=Drosophila willistoni GN=eca PE=3 SV=1 | 1 | 207 | 5.0E-13 |
| sp|B4KB41|TMEDE_DROMO | Transmembrane emp24 domain-containing protein eca OS=Drosophila mojavensis GN=eca PE=3 SV=1 | 1 | 207 | 5.0E-13 |
| sp|B4JG34|TMEDE_DROGR | Transmembrane emp24 domain-containing protein eca OS=Drosophila grimshawi GN=eca PE=3 SV=1 | 1 | 207 | 5.0E-13 |
| sp|B4LYB8|TMEDE_DROVI | Transmembrane emp24 domain-containing protein eca OS=Drosophila virilis GN=eca PE=3 SV=1 | 1 | 207 | 1.0E-12 |
| sp|Q2KJ84|TMED5_BOVIN | Transmembrane emp24 domain-containing protein 5 OS=Bos taurus GN=TMED5 PE=2 SV=1 | 19 | 208 | 1.0E-12 |
| sp|Q9BVK6|TMED9_HUMAN | Transmembrane emp24 domain-containing protein 9 OS=Homo sapiens GN=TMED9 PE=1 SV=2 | 10 | 207 | 3.0E-12 |
| sp|B4GMC3|TMEDE_DROPE | Transmembrane emp24 domain-containing protein eca OS=Drosophila persimilis GN=eca PE=3 SV=1 | 20 | 207 | 4.0E-12 |
| sp|Q295B2|TMEDE_DROPS | Transmembrane emp24 domain-containing protein eca OS=Drosophila pseudoobscura pseudoobscura GN=eca PE=3 SV=1 | 20 | 207 | 4.0E-12 |
| sp|Q99KF1|TMED9_MOUSE | Transmembrane emp24 domain-containing protein 9 OS=Mus musculus GN=Tmed9 PE=1 SV=2 | 20 | 207 | 8.0E-12 |
| sp|Q5I0E7|TMED9_RAT | Transmembrane emp24 domain-containing protein 9 OS=Rattus norvegicus GN=Tmed9 PE=1 SV=1 | 22 | 207 | 1.0E-11 |
| sp|Q3T133|TMED9_BOVIN | Transmembrane emp24 domain-containing protein 9 OS=Bos taurus GN=TMED9 PE=1 SV=1 | 22 | 207 | 1.0E-11 |
| sp|B3MTS8|TMEDE_DROAN | Transmembrane emp24 domain-containing protein eca OS=Drosophila ananassae GN=eca PE=3 SV=1 | 20 | 207 | 1.0E-11 |
| sp|P32803|EMP24_YEAST | Endosomal protein P24B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMP24 PE=1 SV=1 | 10 | 204 | 4.0E-11 |
| sp|Q8R1V4|TMED4_MOUSE | Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1 | 9 | 207 | 3.0E-10 |
| sp|Q5R7E6|TMED1_PONAB | Transmembrane emp24 domain-containing protein 1 OS=Pongo abelii GN=TMED1 PE=2 SV=1 | 24 | 113 | 4.0E-10 |
| sp|Q13445|TMED1_HUMAN | Transmembrane emp24 domain-containing protein 1 OS=Homo sapiens GN=TMED1 PE=1 SV=1 | 24 | 113 | 5.0E-10 |
| sp|Q2TBK5|TMED1_BOVIN | Transmembrane emp24 domain-containing protein 1 OS=Bos taurus GN=TMED1 PE=2 SV=1 | 24 | 113 | 6.0E-10 |
| sp|Q3V009|TMED1_MOUSE | Transmembrane emp24 domain-containing protein 1 OS=Mus musculus GN=Tmed1 PE=1 SV=1 | 24 | 113 | 7.0E-10 |
| sp|Q5BK85|TMED1_RAT | Transmembrane emp24 domain-containing protein 1 OS=Rattus norvegicus GN=Tmed1 PE=2 SV=1 | 24 | 113 | 8.0E-10 |
| sp|Q9LIL4|P24B3_ARATH | Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana GN=At3g22845 PE=2 SV=1 | 10 | 203 | 9.0E-10 |
| sp|Q7Z7H5|TMED4_HUMAN | Transmembrane emp24 domain-containing protein 4 OS=Homo sapiens GN=TMED4 PE=1 SV=1 | 20 | 207 | 1.0E-09 |
| sp|Q9P7I9|EMP24_SCHPO | Endosomal protein P24B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=emp24 PE=3 SV=1 | 8 | 207 | 6.0E-09 |
| sp|Q9FVU0|P24D4_ARATH | Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana GN=CYB PE=1 SV=1 | 64 | 207 | 2.0E-08 |
| sp|Q9S7M9|P24B2_ARATH | Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana GN=At3g07680 PE=1 SV=1 | 34 | 204 | 6.0E-08 |
| sp|Q6IDL4|P24D3_ARATH | Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV=1 | 64 | 207 | 1.0E-07 |
| sp|P38819|ERP5_YEAST | Protein ERP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERP5 PE=1 SV=1 | 6 | 203 | 1.0E-06 |
| sp|Q6BTC2|TMEDA_DEBHA | Endoplasmic reticulum vesicle protein 25 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ERV25 PE=3 SV=2 | 73 | 204 | 6.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| 2 | 177 | 199 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9157 MRLPTIAAGIIACLASNVVATALTYKVAAGEKACFYTDAKKENEKVAFYFAVQSGGSFDVDYLVEGPGGKIILEG EKERQGDFVFTAQRTGEYSFCFDNEMSTFTEKMIDIEISSEHESRTAQLPSKQGTSPEQTSVLEESIFKISGQLS TISRNQKYFRTRENRNFSTVNSTEKRIVNFSMIQIGLIVCMGALQVFIVRFFFQGARKGYV* |
| Coding | >Hirsu2|9157 ATGAGACTGCCGACCATAGCAGCAGGCATCATTGCCTGTTTGGCCAGCAATGTTGTGGCCACAGCGTTGACCTAC AAGGTGGCGGCGGGCGAGAAGGCGTGCTTCTACACGGATGCCAAGAAGGAAAACGAGAAGGTCGCCTTCTACTTT GCCGTTCAATCTGGCGGCTCGTTCGACGTCGATTACCTCGTCGAGGGGCCGGGCGGCAAGATCATACTCGAGGGC GAAAAGGAGCGCCAGGGTGACTTTGTGTTTACAGCGCAGCGAACCGGCGAATACTCATTCTGCTTCGACAATGAG ATGAGCACTTTTACGGAGAAGATGATCGACATTGAGATCTCGAGCGAGCACGAGTCCCGCACAGCGCAACTGCCG TCCAAGCAGGGCACGTCTCCCGAGCAGACATCGGTCTTGGAGGAGTCCATCTTCAAGATTTCTGGTCAATTGTCG ACTATTTCGCGAAACCAGAAGTACTTCCGGACTCGCGAGAATCGGAACTTTAGCACCGTCAACAGCACGGAGAAG CGCATTGTCAACTTTAGCATGATACAAATTGGCCTCATCGTTTGCATGGGCGCCCTGCAGGTCTTTATCGTCAGG TTCTTCTTCCAGGGCGCACGCAAGGGCTACGTATAA |
| Transcript | >Hirsu2|9157 ATGAGACTGCCGACCATAGCAGCAGGCATCATTGCCTGTTTGGCCAGCAATGTTGTGGCCACAGCGTTGACCTAC AAGGTGGCGGCGGGCGAGAAGGCGTGCTTCTACACGGATGCCAAGAAGGAAAACGAGAAGGTCGCCTTCTACTTT GCCGTTCAATCTGGCGGCTCGTTCGACGTCGATTACCTCGTCGAGGGGCCGGGCGGCAAGATCATACTCGAGGGC GAAAAGGAGCGCCAGGGTGACTTTGTGTTTACAGCGCAGCGAACCGGCGAATACTCATTCTGCTTCGACAATGAG ATGAGCACTTTTACGGAGAAGATGATCGACATTGAGATCTCGAGCGAGCACGAGTCCCGCACAGCGCAACTGCCG TCCAAGCAGGGCACGTCTCCCGAGCAGACATCGGTCTTGGAGGAGTCCATCTTCAAGATTTCTGGTCAATTGTCG ACTATTTCGCGAAACCAGAAGTACTTCCGGACTCGCGAGAATCGGAACTTTAGCACCGTCAACAGCACGGAGAAG CGCATTGTCAACTTTAGCATGATACAAATTGGCCTCATCGTTTGCATGGGCGCCCTGCAGGTCTTTATCGTCAGG TTCTTCTTCCAGGGCGCACGCAAGGGCTACGTATAA |
| Gene | >Hirsu2|9157 ATGAGACTGCCGACCATAGCAGCAGGCATCATTGCCTGTTTGGCCAGCAATGTTGTGGCCACAGCGTTGACCTAC AAGGTGGCGGCGGGCGAGAAGGCGTGCTTCTACACGGATGCCAAGAAGGAAAACGAGAAGGTCGCCTTCTACTTT GCCGTGCGTGGCCCGAGCCTTTGGACATGATACGTGAATGCTTCTGACCGTTGCGCAATGCAGGTTCAATCTGGC GGCTCGTTCGACGTCGATTACCTCGTCGAGGGGCCGGGCGGCAAGATCATACTCGAGGGCGAAAAGGAGCGCCAG GGTGACTTTGTGTTTACAGCGCAGCGAACCGGCGAATACTCATTCTGCTTCGACAATGAGATGAGCACTTTTACG GAGAAGATGATCGACATTGAGATCTCGGTCAGTCCCGCTGTCCGGACTGGGTGAAGGCAGGCAAATTGCTAACCC GATCCTCGATGCAGAGCGAGCACGAGTCCCGCACAGCGCAACTGCCGTCCAAGCAGGGCACGTCTCCCGAGCAGA CATCGGTCTTGGAGGAGTCCATCTTCAAGATTTCTGGTCAATTGTCGACTATTTCGCGAAACCAGAAGTACTTCC GGACTCGCGAGAATCGGAACTTTAGCACCGTCAACAGCACGGAGAAGCGCATTGTCAACTTTAGCATGATACAAA TTGGCCTCATCGTTTGCATGGGCGCCCTGCAGGTCTTTATCGTCAGGTTCTTCTTCCAGGTAGGCCTTGTCCCAT ACTCGAGCCACGCCCCCGCATTGGCTGACTCGATTTTCCCTTTGCACTTCAGGGCGCACGCAAGGGCTACGTATA A |