© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9150 |
| Gene name | |
| Location | Contig_646:190..2600 |
| Strand | - |
| Gene length (bp) | 2410 |
| Transcript length (bp) | 2358 |
| Coding sequence length (bp) | 2358 |
| Protein length (aa) | 786 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04055 | Radical_SAM | Radical SAM superfamily | 7.4E-24 | 451 | 625 |
| PF08608 | Wyosine_form | Wyosine base formation | 2.2E-24 | 636 | 704 |
| PF00258 | Flavodoxin_1 | Flavodoxin | 1.1E-09 | 142 | 281 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08960|TYW1_YEAST | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TYW1 PE=1 SV=1 | 115 | 773 | 0.0E+00 |
| sp|O59761|TYW1_SCHPO | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tyw1 PE=3 SV=1 | 116 | 769 | 0.0E+00 |
| sp|Q2KHP8|TYW1_XENLA | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Xenopus laevis GN=tyw1 PE=2 SV=1 | 145 | 769 | 7.0E-148 |
| sp|Q08C92|TYW1_DANRE | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Danio rerio GN=tyw1 PE=2 SV=1 | 143 | 769 | 5.0E-144 |
| sp|Q8BJM7|TYW1_MOUSE | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Mus musculus GN=Tyw1 PE=1 SV=1 | 118 | 769 | 4.0E-143 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08960|TYW1_YEAST | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TYW1 PE=1 SV=1 | 115 | 773 | 0.0E+00 |
| sp|O59761|TYW1_SCHPO | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tyw1 PE=3 SV=1 | 116 | 769 | 0.0E+00 |
| sp|Q2KHP8|TYW1_XENLA | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Xenopus laevis GN=tyw1 PE=2 SV=1 | 145 | 769 | 7.0E-148 |
| sp|Q08C92|TYW1_DANRE | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Danio rerio GN=tyw1 PE=2 SV=1 | 143 | 769 | 5.0E-144 |
| sp|Q8BJM7|TYW1_MOUSE | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Mus musculus GN=Tyw1 PE=1 SV=1 | 118 | 769 | 4.0E-143 |
| sp|Q9NV66|TYW1_HUMAN | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Homo sapiens GN=TYW1 PE=2 SV=2 | 158 | 769 | 1.0E-142 |
| sp|Q5REF9|TYW1_PONAB | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Pongo abelii GN=TYW1 PE=2 SV=1 | 158 | 769 | 2.0E-141 |
| sp|Q8RXN5|TYW1_ARATH | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Arabidopsis thaliana GN=TYW1 PE=2 SV=1 | 118 | 767 | 9.0E-141 |
| sp|Q8H8N3|TYW1_ORYSJ | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Oryza sativa subsp. japonica GN=TYW1 PE=2 SV=1 | 402 | 769 | 1.0E-133 |
| sp|Q6NUM6|TYW1B_HUMAN | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Homo sapiens GN=TYW1B PE=2 SV=3 | 158 | 769 | 3.0E-109 |
| sp|Q9V1F9|TYW1_PYRAB | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=taw1 PE=1 SV=1 | 405 | 717 | 7.0E-55 |
| sp|O59412|TYW1_PYRHO | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=taw1 PE=1 SV=1 | 405 | 717 | 2.0E-54 |
| sp|Q57705|TYW1_METJA | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=taw1 PE=1 SV=1 | 400 | 680 | 3.0E-42 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0051536 | iron-sulfur cluster binding | Yes |
| GO:0010181 | FMN binding | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0051540 | metal cluster binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.5 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9150 MHLFDWLSGLQSDTTADDVVQLWHAHRTPIIFCALVVLIFVRTILHKRDDKIELVALPQIYQKRAALADCPPSVH TQPDDRTLAKANGPRRIKGGIARRPAQNAQHNPDLARPIKLVVFFSSVTTKTDKIARDFLADCAKATEQLARDTN RAFLVPDLYDLSEIDFEDFFVSTPSGPDQARLFYLFLIPSYNIDTINDTLLQHLQETHHDFRIDTAPLVSLLGYA VFGFGDREGWPDEADGFCFQAKDLDKWMSKLTGRKRAYPVGMGDMKSDYSERFDEWAAGVRETIRHIARTGNLGD GVRGSGDAVESDDEDRVDDVDEDADDEEPADEKQPTSRALDDVEDLGKMLRTTGDGANTEQPKAAPLAVDFTTYG PSSGKPPQSRVPVVKEMVAKNSPTYAALTKQGYSIVGSHSGVKICRWTKSALRGRGSCYKYSLYGINSHQCMETT PSLSCSNKCVFCWRHGTNPVGTTWRWVVDPPDMIFEGVKENHYKKIKMMRGVPGVRAERYAEALRIRHCALSLVG EPIFYPHINEFLALLHAERISSFLVCNAQHPDQLAALKAVTQLYVSIDASNRESLRKIDRPLHRDFWERFQRCLD ILREKRFRHRTVFRLTLVKGFNVEDEAEGYAQLVERGLPCFVEVKGVTYCGTATSSNAGLSMSNVPFYWEVCEFV KALEQRLAARGLRYGIAAEHAHSCCILLASERFRVDGRWHTHIDYARFFQLLEERGPDGEWTPEDYMGEPTPDWA LWGNGGFDPRDQRVDRKGRKMENLVVRERPPGEVW* |
| Coding | >Hirsu2|9150 ATGCATCTCTTCGACTGGCTGTCGGGCCTCCAATCCGACACCACGGCTGACGACGTCGTCCAGCTCTGGCATGCG CACCGGACGCCAATCATCTTCTGCGCTCTTGTCGTCCTCATATTCGTCCGGACGATCCTTCACAAACGCGACGAC AAGATCGAACTCGTCGCGCTCCCTCAGATCTATCAGAAGCGCGCCGCGCTCGCCGACTGCCCGCCATCTGTCCAC ACCCAACCCGACGACAGGACGCTCGCCAAAGCCAACGGCCCGCGCAGGATCAAGGGAGGAATCGCGAGGAGGCCT GCCCAGAATGCGCAGCACAATCCAGACTTGGCGCGGCCGATCAAGCTTGTCGTCTTCTTCTCCTCCGTCACGACC AAGACGGACAAGATTGCTCGCGATTTCCTGGCCGACTGCGCCAAGGCTACGGAGCAGCTGGCCCGAGACACGAAC CGCGCATTTCTGGTACCCGACCTTTACGATCTGTCCGAGATTGACTTTGAAGACTTCTTCGTCTCGACCCCGAGC GGCCCCGACCAGGCCCGCCTGTTCTACCTCTTCCTCATCCCGAGCTACAACATTGACACGATCAACGACACCTTG CTACAGCACCTGCAAGAGACACACCATGACTTCCGCATCGATACCGCGCCTCTCGTCTCCTTGCTCGGCTATGCC GTCTTTGGCTTCGGCGACAGGGAAGGCTGGCCAGACGAGGCCGACGGCTTCTGCTTCCAGGCCAAAGACTTGGAC AAGTGGATGTCCAAGCTGACGGGGCGAAAACGCGCCTATCCTGTCGGCATGGGCGACATGAAGAGCGACTATTCC GAGCGTTTTGACGAATGGGCGGCCGGCGTCCGAGAAACCATCCGCCACATCGCACGAACAGGGAACCTGGGCGAC GGTGTACGTGGGAGCGGAGACGCTGTCGAAAGCGACGATGAGGATCGAGTCGATGACGTCGATGAGGATGCAGAC GACGAGGAGCCAGCCGACGAGAAACAGCCGACGTCAAGAGCGCTGGACGACGTCGAGGACCTGGGCAAGATGCTC CGCACAACCGGAGACGGCGCAAATACGGAACAGCCCAAGGCGGCGCCCTTGGCCGTCGACTTCACCACGTACGGT CCTTCGTCTGGCAAGCCGCCCCAGTCTCGAGTGCCGGTCGTCAAGGAGATGGTGGCCAAGAACTCGCCGACGTAC GCAGCCCTGACGAAGCAGGGCTACTCCATCGTCGGATCCCACTCCGGCGTCAAGATCTGTCGATGGACCAAGTCT GCGCTCCGCGGACGCGGCAGCTGCTACAAGTACTCGCTCTACGGCATCAACTCGCACCAATGCATGGAGACGACG CCGTCGCTCTCCTGCTCCAACAAGTGCGTCTTCTGCTGGCGGCACGGCACGAACCCGGTCGGGACGACGTGGCGC TGGGTCGTGGACCCGCCCGACATGATATTCGAAGGCGTCAAGGAGAACCACTACAAGAAGATCAAGATGATGCGC GGCGTGCCGGGGGTCCGCGCCGAGCGATACGCCGAGGCGCTGAGGATCCGGCACTGCGCGCTGTCGCTGGTCGGC GAGCCAATCTTCTACCCGCACATCAACGAGTTCCTGGCGCTCCTGCACGCCGAGCGCATCTCGTCCTTCCTGGTC TGCAACGCGCAGCACCCGGACCAGCTCGCGGCGCTCAAGGCCGTCACCCAGCTGTACGTGTCCATCGACGCGTCG AACCGCGAGTCGCTCCGCAAGATCGACCGGCCGCTGCACCGCGACTTCTGGGAGCGCTTCCAGCGCTGCCTCGAC ATCCTGCGCGAGAAGCGCTTCCGGCACCGCACCGTCTTCCGCCTGACGCTCGTCAAGGGCTTCAACGTCGAGGAC GAGGCCGAGGGCTACGCCCAGCTGGTGGAGCGCGGCCTTCCGTGCTTCGTCGAGGTCAAGGGCGTCACCTACTGC GGCACCGCGACCTCGTCCAACGCGGGGCTCAGCATGTCCAACGTGCCCTTCTACTGGGAGGTGTGCGAGTTCGTC AAGGCCCTGGAGCAGAGGCTGGCCGCCCGGGGCCTGCGGTACGGCATCGCCGCCGAGCACGCCCACAGCTGCTGC ATCCTGCTGGCGAGCGAGCGGTTCCGCGTCGATGGCCGGTGGCACACCCACATCGACTACGCCCGCTTCTTCCAG CTGCTCGAGGAGAGGGGCCCCGACGGCGAGTGGACGCCCGAGGACTACATGGGCGAGCCGACGCCGGACTGGGCT CTGTGGGGGAACGGCGGCTTCGACCCGCGCGACCAACGGGTCGACCGCAAGGGGCGCAAGATGGAGAACCTGGTC GTCCGCGAGCGGCCGCCGGGCGAGGTTTGGTAG |
| Transcript | >Hirsu2|9150 ATGCATCTCTTCGACTGGCTGTCGGGCCTCCAATCCGACACCACGGCTGACGACGTCGTCCAGCTCTGGCATGCG CACCGGACGCCAATCATCTTCTGCGCTCTTGTCGTCCTCATATTCGTCCGGACGATCCTTCACAAACGCGACGAC AAGATCGAACTCGTCGCGCTCCCTCAGATCTATCAGAAGCGCGCCGCGCTCGCCGACTGCCCGCCATCTGTCCAC ACCCAACCCGACGACAGGACGCTCGCCAAAGCCAACGGCCCGCGCAGGATCAAGGGAGGAATCGCGAGGAGGCCT GCCCAGAATGCGCAGCACAATCCAGACTTGGCGCGGCCGATCAAGCTTGTCGTCTTCTTCTCCTCCGTCACGACC AAGACGGACAAGATTGCTCGCGATTTCCTGGCCGACTGCGCCAAGGCTACGGAGCAGCTGGCCCGAGACACGAAC CGCGCATTTCTGGTACCCGACCTTTACGATCTGTCCGAGATTGACTTTGAAGACTTCTTCGTCTCGACCCCGAGC GGCCCCGACCAGGCCCGCCTGTTCTACCTCTTCCTCATCCCGAGCTACAACATTGACACGATCAACGACACCTTG CTACAGCACCTGCAAGAGACACACCATGACTTCCGCATCGATACCGCGCCTCTCGTCTCCTTGCTCGGCTATGCC GTCTTTGGCTTCGGCGACAGGGAAGGCTGGCCAGACGAGGCCGACGGCTTCTGCTTCCAGGCCAAAGACTTGGAC AAGTGGATGTCCAAGCTGACGGGGCGAAAACGCGCCTATCCTGTCGGCATGGGCGACATGAAGAGCGACTATTCC GAGCGTTTTGACGAATGGGCGGCCGGCGTCCGAGAAACCATCCGCCACATCGCACGAACAGGGAACCTGGGCGAC GGTGTACGTGGGAGCGGAGACGCTGTCGAAAGCGACGATGAGGATCGAGTCGATGACGTCGATGAGGATGCAGAC GACGAGGAGCCAGCCGACGAGAAACAGCCGACGTCAAGAGCGCTGGACGACGTCGAGGACCTGGGCAAGATGCTC CGCACAACCGGAGACGGCGCAAATACGGAACAGCCCAAGGCGGCGCCCTTGGCCGTCGACTTCACCACGTACGGT CCTTCGTCTGGCAAGCCGCCCCAGTCTCGAGTGCCGGTCGTCAAGGAGATGGTGGCCAAGAACTCGCCGACGTAC GCAGCCCTGACGAAGCAGGGCTACTCCATCGTCGGATCCCACTCCGGCGTCAAGATCTGTCGATGGACCAAGTCT GCGCTCCGCGGACGCGGCAGCTGCTACAAGTACTCGCTCTACGGCATCAACTCGCACCAATGCATGGAGACGACG CCGTCGCTCTCCTGCTCCAACAAGTGCGTCTTCTGCTGGCGGCACGGCACGAACCCGGTCGGGACGACGTGGCGC TGGGTCGTGGACCCGCCCGACATGATATTCGAAGGCGTCAAGGAGAACCACTACAAGAAGATCAAGATGATGCGC GGCGTGCCGGGGGTCCGCGCCGAGCGATACGCCGAGGCGCTGAGGATCCGGCACTGCGCGCTGTCGCTGGTCGGC GAGCCAATCTTCTACCCGCACATCAACGAGTTCCTGGCGCTCCTGCACGCCGAGCGCATCTCGTCCTTCCTGGTC TGCAACGCGCAGCACCCGGACCAGCTCGCGGCGCTCAAGGCCGTCACCCAGCTGTACGTGTCCATCGACGCGTCG AACCGCGAGTCGCTCCGCAAGATCGACCGGCCGCTGCACCGCGACTTCTGGGAGCGCTTCCAGCGCTGCCTCGAC ATCCTGCGCGAGAAGCGCTTCCGGCACCGCACCGTCTTCCGCCTGACGCTCGTCAAGGGCTTCAACGTCGAGGAC GAGGCCGAGGGCTACGCCCAGCTGGTGGAGCGCGGCCTTCCGTGCTTCGTCGAGGTCAAGGGCGTCACCTACTGC GGCACCGCGACCTCGTCCAACGCGGGGCTCAGCATGTCCAACGTGCCCTTCTACTGGGAGGTGTGCGAGTTCGTC AAGGCCCTGGAGCAGAGGCTGGCCGCCCGGGGCCTGCGGTACGGCATCGCCGCCGAGCACGCCCACAGCTGCTGC ATCCTGCTGGCGAGCGAGCGGTTCCGCGTCGATGGCCGGTGGCACACCCACATCGACTACGCCCGCTTCTTCCAG CTGCTCGAGGAGAGGGGCCCCGACGGCGAGTGGACGCCCGAGGACTACATGGGCGAGCCGACGCCGGACTGGGCT CTGTGGGGGAACGGCGGCTTCGACCCGCGCGACCAACGGGTCGACCGCAAGGGGCGCAAGATGGAGAACCTGGTC GTCCGCGAGCGGCCGCCGGGCGAGGTTTGGTAG |
| Gene | >Hirsu2|9150 ATGCATCTCTTCGACTGGCTGTCGGGCCTCCAATCCGACACCACGGCTGACGGTAAGTTGCGCTGCGCAAAACTC GAGTCGTCGCAAAATCTTACCCTGCATAGACGTCGTCCAGCTCTGGCATGCGCACCGGACGCCAATCATCTTCTG CGCTCTTGTCGTCCTCATATTCGTCCGGACGATCCTTCACAAACGCGACGACAAGATCGAACTCGTCGCGCTCCC TCAGATCTATCAGAAGCGCGCCGCGCTCGCCGACTGCCCGCCATCTGTCCACACCCAACCCGACGACAGGACGCT CGCCAAAGCCAACGGCCCGCGCAGGATCAAGGGAGGAATCGCGAGGAGGCCTGCCCAGAATGCGCAGCACAATCC AGACTTGGCGCGGCCGATCAAGCTTGTCGTCTTCTTCTCCTCCGTCACGACCAAGACGGACAAGATTGCTCGCGA TTTCCTGGCCGACTGCGCCAAGGCTACGGAGCAGCTGGCCCGAGACACGAACCGCGCATTTCTGGTACCCGACCT TTACGATCTGTCCGAGATTGACTTTGAAGACTTCTTCGTCTCGACCCCGAGCGGCCCCGACCAGGCCCGCCTGTT CTACCTCTTCCTCATCCCGAGCTACAACATTGACACGATCAACGACACCTTGCTACAGCACCTGCAAGAGACACA CCATGACTTCCGCATCGATACCGCGCCTCTCGTCTCCTTGCTCGGCTATGCCGTCTTTGGCTTCGGCGACAGGGA AGGCTGGCCAGACGAGGCCGACGGCTTCTGCTTCCAGGCCAAAGACTTGGACAAGTGGATGTCCAAGCTGACGGG GCGAAAACGCGCCTATCCTGTCGGCATGGGCGACATGAAGAGCGACTATTCCGAGCGTTTTGACGAATGGGCGGC CGGCGTCCGAGAAACCATCCGCCACATCGCACGAACAGGGAACCTGGGCGACGGTGTACGTGGGAGCGGAGACGC TGTCGAAAGCGACGATGAGGATCGAGTCGATGACGTCGATGAGGATGCAGACGACGAGGAGCCAGCCGACGAGAA ACAGCCGACGTCAAGAGCGCTGGACGACGTCGAGGACCTGGGCAAGATGCTCCGCACAACCGGAGACGGCGCAAA TACGGAACAGCCCAAGGCGGCGCCCTTGGCCGTCGACTTCACCACGTACGGTCCTTCGTCTGGCAAGCCGCCCCA GTCTCGAGTGCCGGTCGTCAAGGAGATGGTGGCCAAGAACTCGCCGACGTACGCAGCCCTGACGAAGCAGGGCTA CTCCATCGTCGGATCCCACTCCGGCGTCAAGATCTGTCGATGGACCAAGTCTGCGCTCCGCGGACGCGGCAGCTG CTACAAGTACTCGCTCTACGGCATCAACTCGCACCAATGCATGGAGACGACGCCGTCGCTCTCCTGCTCCAACAA GTGCGTCTTCTGCTGGCGGCACGGCACGAACCCGGTCGGGACGACGTGGCGCTGGGTCGTGGACCCGCCCGACAT GATATTCGAAGGCGTCAAGGAGAACCACTACAAGAAGATCAAGATGATGCGCGGCGTGCCGGGGGTCCGCGCCGA GCGATACGCCGAGGCGCTGAGGATCCGGCACTGCGCGCTGTCGCTGGTCGGCGAGCCAATCTTCTACCCGCACAT CAACGAGTTCCTGGCGCTCCTGCACGCCGAGCGCATCTCGTCCTTCCTGGTCTGCAACGCGCAGCACCCGGACCA GCTCGCGGCGCTCAAGGCCGTCACCCAGCTGTACGTGTCCATCGACGCGTCGAACCGCGAGTCGCTCCGCAAGAT CGACCGGCCGCTGCACCGCGACTTCTGGGAGCGCTTCCAGCGCTGCCTCGACATCCTGCGCGAGAAGCGCTTCCG GCACCGCACCGTCTTCCGCCTGACGCTCGTCAAGGGCTTCAACGTCGAGGACGAGGCCGAGGGCTACGCCCAGCT GGTGGAGCGCGGCCTTCCGTGCTTCGTCGAGGTCAAGGGCGTCACCTACTGCGGCACCGCGACCTCGTCCAACGC GGGGCTCAGCATGTCCAACGTGCCCTTCTACTGGGAGGTGTGCGAGTTCGTCAAGGCCCTGGAGCAGAGGCTGGC CGCCCGGGGCCTGCGGTACGGCATCGCCGCCGAGCACGCCCACAGCTGCTGCATCCTGCTGGCGAGCGAGCGGTT CCGCGTCGATGGCCGGTGGCACACCCACATCGACTACGCCCGCTTCTTCCAGCTGCTCGAGGAGAGGGGCCCCGA CGGCGAGTGGACGCCCGAGGACTACATGGGCGAGCCGACGCCGGACTGGGCTCTGTGGGGGAACGGCGGCTTCGA CCCGCGCGACCAACGGGTCGACCGCAAGGGGCGCAAGATGGAGAACCTGGTCGTCCGCGAGCGGCCGCCGGGCGA GGTTTGGTAG |