© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|9147 |
| Gene name | |
| Location | Contig_645:2202..2805 |
| Strand | + |
| Gene length (bp) | 603 |
| Transcript length (bp) | 477 |
| Coding sequence length (bp) | 477 |
| Protein length (aa) | 159 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01284 | MARVEL | Membrane-associating domain | 4.3E-10 | 12 | 127 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 39 | 61 | 22 |
| 3 | 73 | 91 | 18 |
| 4 | 111 | 133 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|9147 MLRFLILGSHFMIFLSSLIVTALLSYFIHTNSFRGAHLIYQEVIATVTLAIYLFGMLLPLIDSYRGYLMPMNLIL SYLWLTSFIFTAQDWGGGRCIFSPPNFGECRKKHAAEAFTFLAFFFLICNTVAEGYLLRTHGSNKGLTKERTDRA ADNSANVV* |
| Coding | >Hirsu2|9147 ATGTTGCGCTTCTTGATCCTCGGCAGCCACTTCATGATCTTCCTCTCGTCCTTGATAGTTACAGCGTTACTTTCA TACTTCATCCACACCAACTCGTTCCGCGGCGCGCATCTCATCTACCAGGAAGTCATTGCTACAGTTACTCTAGCC ATTTATCTGTTTGGCATGCTCCTCCCACTGATCGACAGCTACCGGGGTTACTTGATGCCGATGAACCTGATCTTG TCCTATCTCTGGCTCACATCATTCATCTTCACCGCTCAGGACTGGGGCGGTGGCCGCTGCATCTTCAGCCCGCCC AACTTTGGCGAATGTCGGAAGAAGCACGCGGCTGAAGCCTTCACTTTCCTTGCCTTCTTCTTCCTCATCTGCAAC ACCGTAGCCGAGGGCTACCTGTTGAGGACGCATGGATCCAACAAAGGCCTTACCAAGGAGAGGACTGATCGCGCC GCCGACAACTCCGCTAACGTTGTCTAG |
| Transcript | >Hirsu2|9147 ATGTTGCGCTTCTTGATCCTCGGCAGCCACTTCATGATCTTCCTCTCGTCCTTGATAGTTACAGCGTTACTTTCA TACTTCATCCACACCAACTCGTTCCGCGGCGCGCATCTCATCTACCAGGAAGTCATTGCTACAGTTACTCTAGCC ATTTATCTGTTTGGCATGCTCCTCCCACTGATCGACAGCTACCGGGGTTACTTGATGCCGATGAACCTGATCTTG TCCTATCTCTGGCTCACATCATTCATCTTCACCGCTCAGGACTGGGGCGGTGGCCGCTGCATCTTCAGCCCGCCC AACTTTGGCGAATGTCGGAAGAAGCACGCGGCTGAAGCCTTCACTTTCCTTGCCTTCTTCTTCCTCATCTGCAAC ACCGTAGCCGAGGGCTACCTGTTGAGGACGCATGGATCCAACAAAGGCCTTACCAAGGAGAGGACTGATCGCGCC GCCGACAACTCCGCTAACGTTGTCTAG |
| Gene | >Hirsu2|9147 ATGTTGCGCTTCTTGATCCTCGGCAGCCACTTCATGATCTTCCTCTCGTCCTTGATAGTTACAGCGTTACTTTCA TACTTCATCCACACCAACTCGTTCCGCGGCGCGCATCTCATCTACCAGGAAGTCATTGTCAGTCTTGAGGGAATC TGGGGACGTCAACTGTCCCGGCTTATCTGACTCTTCCTCCCAGGCTACAGTTACTCTAGCCATTTATCTGTTTGG CATGCTCCTCCCACTGATCGACAGCTACCGGGGTTACTTGATGCCGATGAACCTGATCTTGTCCTATCTCTGGCT CACATCATTCATCTTCACCGCTCAGGACTGGGGCGGTGGCCGCTGCATCTTCAGCCCGCCCAACTTTGGCGAATG TCGGAAGAAGCACGCGGCTGAAGCCTTCACTTTCCTTGCCTTGTTAGTGGAATCCCACTCCCCAATTATCGCGGA CCACGACACACTGACTGGCACGCATTACGTAGCTTCTTCCTCATCTGCAACACCGTAGCCGAGGGCTACCTGTTG AGGACGCATGGATCCAACAAAGGCCTTACCAAGGAGAGGACTGATCGCGCCGCCGACAACTCCGCTAACGTTGTC TAG |