© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|8998 |
| Gene name | |
| Location | Contig_623:901..1175 |
| Strand | - |
| Gene length (bp) | 274 |
| Transcript length (bp) | 213 |
| Coding sequence length (bp) | 213 |
| Protein length (aa) | 71 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.101 | 0.0709 | 0.9774 | 0.0511 | 0.162 | 0.0153 | 0.0602 | 0.0522 | 0.0184 | 0.0032 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 19 | 0.999806 |
| Orthofinder run ID | 4 |
| Orthogroup | 10786 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|8998 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8998 MKLLSIAWLLAALAVGGEATNCIMRNGKHECIDKRGVVESNGDQARGHDVIQGGQVWRDKDGKGREGWVG* |
| Coding | >Hirsu2|8998 ATGAAGCTGCTTTCGATCGCGTGGCTGCTGGCGGCGCTGGCGGTGGGCGGCGAGGCGACCAACTGCATCATGCGG AACGGCAAGCACGAGTGCATCGACAAGCGCGGCGTGGTCGAGTCGAACGGGGACCAGGCAAGAGGCCACGATGTC ATCCAAGGCGGACAGGTCTGGCGAGACAAGGACGGCAAGGGAAGAGAGGGGTGGGTGGGATGA |
| Transcript | >Hirsu2|8998 ATGAAGCTGCTTTCGATCGCGTGGCTGCTGGCGGCGCTGGCGGTGGGCGGCGAGGCGACCAACTGCATCATGCGG AACGGCAAGCACGAGTGCATCGACAAGCGCGGCGTGGTCGAGTCGAACGGGGACCAGGCAAGAGGCCACGATGTC ATCCAAGGCGGACAGGTCTGGCGAGACAAGGACGGCAAGGGAAGAGAGGGGTGGGTGGGATGA |
| Gene | >Hirsu2|8998 ATGAAGCTGCTTTCGATCGCGTGGCTGCTGGCGGCGCTGGCGGTGGGCGGCGAGGCGACCAACTGCATCATGCGG AACGGCAAGCACGAGTGCATCGACAAGCGCGGCGTGGTCGAGTCGAACGGTGCGTCCCCTCTCTCCCCCTTTCTC GACCCCTACCGCGGCGAGTGACTGAGGCGGCGCAGGGGACCAGGCAAGAGGCCACGATGTCATCCAAGGCGGACA GGTCTGGCGAGACAAGGACGGCAAGGGAAGAGAGGGGTGGGTGGGATGA |