© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|899 |
| Gene name | |
| Location | Contig_119:1152..2236 |
| Strand | + |
| Gene length (bp) | 1084 |
| Transcript length (bp) | 960 |
| Coding sequence length (bp) | 960 |
| Protein length (aa) | 320 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05739 | SNARE | SNARE domain | 5.0E-13 | 263 | 315 |
| PF11416 | Syntaxin-5_N | Syntaxin-5 N-terminal, Sly1p-binding domain | 3.9E-08 | 5 | 23 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13644|SED5_SCHPO | Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 | 5 | 318 | 3.0E-84 |
| sp|Q01590|SED5_YEAST | Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 | 5 | 318 | 5.0E-58 |
| sp|Q08DB5|STX5_BOVIN | Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 | 5 | 302 | 8.0E-55 |
| sp|Q8K1E0|STX5_MOUSE | Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 | 5 | 302 | 2.0E-54 |
| sp|Q13190|STX5_HUMAN | Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 | 5 | 302 | 9.0E-54 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13644|SED5_SCHPO | Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 | 5 | 318 | 3.0E-84 |
| sp|Q01590|SED5_YEAST | Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 | 5 | 318 | 5.0E-58 |
| sp|Q08DB5|STX5_BOVIN | Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 | 5 | 302 | 8.0E-55 |
| sp|Q8K1E0|STX5_MOUSE | Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 | 5 | 302 | 2.0E-54 |
| sp|Q13190|STX5_HUMAN | Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 | 5 | 302 | 9.0E-54 |
| sp|Q08851|STX5_RAT | Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 | 5 | 302 | 4.0E-53 |
| sp|Q24509|STX5_DROME | Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 | 54 | 303 | 6.0E-53 |
| sp|Q9LK09|SYP32_ARATH | Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 | 4 | 316 | 3.0E-49 |
| sp|Q9FFK1|SYP31_ARATH | Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 | 5 | 316 | 2.0E-42 |
| sp|Q20797|STX5_CAEEL | Putative syntaxin-5 OS=Caenorhabditis elegans GN=syx-5 PE=3 SV=1 | 42 | 302 | 2.0E-39 |
| sp|O14662|STX16_HUMAN | Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3 | 62 | 299 | 8.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 298 | 317 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|899 MAVGSIQDRTAEFKSVLAQAQRQQNSSKAGSQRRALLNDAQKAAADGDARPRRSDFARKAAEIGRGISATMGKLE KLAQLAKRRTLFDDRPIEINELTFVIKQDLSSLNQQIGALQTLSKQQHPKADQEGEHNKNVVYLLQGKLTDVSVN FKDVLEARTKNIQASRSRTENFISTVTQHAQPSLQQSASPLYGTPNRASPAPGSDTLSLNPVGEQQLLMMEEAQP SNTYIQQRGEAIEAIEKTISELGSIFGQLATMVSEQSDMIQRIDANTEDVVDNVDGAQRELMKYWSRVSSNRWLI AKMFGVLMIFFLLWVLVSG* |
| Coding | >Hirsu2|899 ATGGCGGTCGGATCGATCCAAGACCGCACGGCCGAGTTCAAGTCGGTCCTAGCCCAGGCCCAGCGCCAGCAGAAC TCGAGCAAGGCCGGGTCGCAGAGGAGAGCGCTCCTGAACGATGCCCAGAAGGCGGCGGCGGATGGAGATGCGAGG CCTCGGCGGTCCGACTTCGCGCGCAAAGCTGCCGAGATCGGACGTGGCATCTCCGCCACCATGGGCAAGCTCGAG AAGCTGGCGCAGCTCGCCAAGCGCCGCACCCTGTTCGACGACCGGCCCATCGAGATCAACGAGCTCACCTTCGTC ATCAAGCAAGACCTGTCGTCGCTGAATCAACAAATCGGAGCGCTCCAGACGCTCTCGAAGCAGCAGCACCCCAAG GCCGACCAAGAAGGCGAACACAACAAGAACGTCGTATACCTGCTGCAAGGTAAGCTGACCGACGTCTCGGTCAAC TTCAAGGACGTGCTCGAGGCCCGGACCAAGAACATCCAGGCGTCGAGGTCGAGGACGGAAAACTTCATCTCGACC GTGACCCAGCATGCGCAGCCGTCGCTGCAGCAGTCGGCCTCGCCCCTCTACGGCACGCCCAACCGCGCCTCCCCG GCCCCGGGCTCCGACACGCTCTCGCTCAACCCGGTCGGCGAGCAGCAGCTGCTGATGATGGAGGAGGCCCAGCCA TCCAACACCTACATACAGCAGCGCGGAGAGGCCATCGAGGCCATCGAGAAGACCATCAGTGAGCTGGGCAGCATC TTCGGCCAACTGGCGACCATGGTCTCGGAGCAGAGCGACATGATCCAGCGCATCGACGCCAACACCGAGGACGTG GTCGACAACGTCGACGGCGCTCAGCGGGAGCTCATGAAATATTGGTCGCGCGTCTCGAGCAACCGGTGGCTGATA GCCAAGATGTTTGGCGTCTTGATGATATTCTTCCTACTCTGGGTTCTTGTCTCGGGCTGA |
| Transcript | >Hirsu2|899 ATGGCGGTCGGATCGATCCAAGACCGCACGGCCGAGTTCAAGTCGGTCCTAGCCCAGGCCCAGCGCCAGCAGAAC TCGAGCAAGGCCGGGTCGCAGAGGAGAGCGCTCCTGAACGATGCCCAGAAGGCGGCGGCGGATGGAGATGCGAGG CCTCGGCGGTCCGACTTCGCGCGCAAAGCTGCCGAGATCGGACGTGGCATCTCCGCCACCATGGGCAAGCTCGAG AAGCTGGCGCAGCTCGCCAAGCGCCGCACCCTGTTCGACGACCGGCCCATCGAGATCAACGAGCTCACCTTCGTC ATCAAGCAAGACCTGTCGTCGCTGAATCAACAAATCGGAGCGCTCCAGACGCTCTCGAAGCAGCAGCACCCCAAG GCCGACCAAGAAGGCGAACACAACAAGAACGTCGTATACCTGCTGCAAGGTAAGCTGACCGACGTCTCGGTCAAC TTCAAGGACGTGCTCGAGGCCCGGACCAAGAACATCCAGGCGTCGAGGTCGAGGACGGAAAACTTCATCTCGACC GTGACCCAGCATGCGCAGCCGTCGCTGCAGCAGTCGGCCTCGCCCCTCTACGGCACGCCCAACCGCGCCTCCCCG GCCCCGGGCTCCGACACGCTCTCGCTCAACCCGGTCGGCGAGCAGCAGCTGCTGATGATGGAGGAGGCCCAGCCA TCCAACACCTACATACAGCAGCGCGGAGAGGCCATCGAGGCCATCGAGAAGACCATCAGTGAGCTGGGCAGCATC TTCGGCCAACTGGCGACCATGGTCTCGGAGCAGAGCGACATGATCCAGCGCATCGACGCCAACACCGAGGACGTG GTCGACAACGTCGACGGCGCTCAGCGGGAGCTCATGAAATATTGGTCGCGCGTCTCGAGCAACCGGTGGCTGATA GCCAAGATGTTTGGCGTCTTGATGATATTCTTCCTACTCTGGGTTCTTGTCTCGGGCTGA |
| Gene | >Hirsu2|899 ATGGCGGTCGGATCGATCCAAGACCGCACGGCCGAGTTCAAGTCGGTCCTAGCCCAGGCCCAGCGCCAGCAGAAC TCGAGCAAGGCCGGGTCGCAGAGGAGAGCGCTCCTGAACGATGCCCAGAAGGCGGCGGCGGATGGAGATGCGAGG CCTCGGCGGTCCGACTTCGCGCGCAAAGCTGCCGAGATCGGACGTGGCATCTCCGCCACCATGGGCAAGCTCGAG AAGCTGGCGCAGCGTGAGTCGGGTCACACGGCGCGTCCTGTTGACTCGTCGCCTACTGACATGACGAGCCCACAG TCGCCAAGCGCCGCACCCTGTTCGACGACCGGCCCATCGAGATCAACGAGCTCACCTTCGTCATCAAGCAAGACC TGTCGTCGCTGAATCAACAAATCGGAGCGCTCCAGACGCTCTCGAAGCAGCAGCACCCCAAGGCCGACCAAGAAG GCGAACACAACAAGAACGTCGTATACCTGCTGCAAGGTAAGCTGACCGACGTCTCGGTCAACTTCAAGGACGTGC TCGAGGCCCGGACCAAGAACATCCAGGCGTCGAGGTCGAGGACGGAAAACTTCATCTCGACCGTGACCCAGCATG CGCAGCCGTCGCTGCAGCAGTCGGCCTCGCCCCTCTACGGCACGCCCAACCGCGCCTCCCCGGCCCCGGGCTCCG ACACGCTCTCGCTCAACCCGGTCGGCGAGCAGCAGCTGCTGATGATGGAGGAGGCCCAGCCATCCAACACCTACA TACAGCAGCGCGGAGAGGCCATCGAGGCCATCGAGAAGACCATCAGTGAGCTGGGCAGCATCTTCGGCCAACTGG CGACCATGGTCTCGGAGCAGAGCGACATGATCCAGCGCATCGACGCCAACACCGAGGACGTGGTCGACAACGTCG ACGGCGCTCAGCGGGAGCTCATGAAATATTGGTCGCGCGTCTCGAGCAACCGGTGGCTGATAGCCAAGATGTTTG GCGTCTTGATGATATTCTTCCTGTCGGTGGCGCCCGTCCCGTGCGCGCGCGCGCGATGCCACGCTAACCTGTCGT TTCTGCCAGACTCTGGGTTCTTGTCTCGGGCTGA |