Protein ID | Hirsu2|8960 |
Gene name | |
Location | Contig_619:9876..10791 |
Strand | - |
Gene length (bp) | 915 |
Transcript length (bp) | 915 |
Coding sequence length (bp) | 915 |
Protein length (aa) | 305 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04478 | Mid2 | Mid2 like cell wall stress sensor | 2.4E-05 | 172 | 235 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide | 0.0908 | 0.1443 | 0.4528 | 0.5365 | 0.181 | 0.0039 | 0.0973 | 0.4013 | 0.2425 | 0.0336 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 22 | 0.999688 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 221 | 243 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 4356 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|8960 MFYPRFSRLFVLTLSLLWVAQAAWPNLDLGGLRSHFARQLDDLPGLSGTSASASSASSDSSAESESSSAPSSPSP TSQKAALSATTDTPSSAPSTPTPSSRRPPQNQSPSSEPTPSSAPSPVQTPSSTPTPSRSPESKSEESSTSESQPE SSSSTSSEAKDESSQPKPTPVVSTSIHTITLTNSDGSKVVATSTSRTTTTPGLNSDGATETSGMTTKTRNTVIGV VVGIGGAIALGALGLMAWRIWGRKKNSEENDGLIEYDMTNSHLEKPNQGSSVGPGPRSPFQSTLENYHQPSQVNA SSNF* |
Coding | >Hirsu2|8960 ATGTTTTACCCACGATTCTCGCGCCTCTTTGTGCTGACCCTATCGCTGCTATGGGTGGCCCAAGCCGCATGGCCG AACCTGGACTTGGGTGGCCTTCGGTCGCACTTTGCCAGGCAGCTTGACGATCTCCCCGGCCTCAGCGGCACATCT GCCTCGGCTTCCAGCGCCTCCAGCGACTCCAGCGCCGAAAGCGAATCCTCATCGGCTCCGTCTAGCCCCTCGCCG ACCAGCCAGAAAGCGGCCCTCTCCGCTACGACGGACACGCCCAGCTCGGCACCTTCTACGCCTACGCCCTCATCC AGGCGGCCGCCTCAAAATCAGAGTCCCAGCTCCGAGCCCACCCCCTCGTCTGCCCCGAGCCCCGTGCAGACACCT TCTTCGACACCGACGCCTTCGAGATCGCCCGAGAGCAAGTCCGAAGAAAGCTCGACTTCCGAGTCCCAGCCCGAG TCGTCCTCTTCTACTTCATCCGAAGCCAAGGACGAGTCATCTCAGCCAAAGCCGACGCCCGTCGTGTCCACGTCC ATTCACACCATCACCCTGACCAATAGCGATGGCTCAAAGGTGGTGGCAACTTCGACTTCGAGGACCACGACGACG CCCGGCCTCAACTCGGACGGGGCCACCGAGACGTCCGGTATGACCACTAAGACGCGCAATACCGTCATCGGCGTC GTCGTGGGCATCGGCGGTGCCATCGCCCTGGGAGCCCTGGGCCTGATGGCCTGGCGAATCTGGGGACGCAAGAAG AACTCGGAGGAGAACGACGGCCTCATAGAGTACGACATGACCAACTCGCACCTCGAGAAGCCTAACCAGGGGAGC TCCGTCGGTCCCGGCCCGCGAAGCCCTTTCCAGTCGACGCTGGAGAACTACCACCAGCCGTCGCAGGTGAACGCG TCGTCCAACTTTTAA |
Transcript | >Hirsu2|8960 ATGTTTTACCCACGATTCTCGCGCCTCTTTGTGCTGACCCTATCGCTGCTATGGGTGGCCCAAGCCGCATGGCCG AACCTGGACTTGGGTGGCCTTCGGTCGCACTTTGCCAGGCAGCTTGACGATCTCCCCGGCCTCAGCGGCACATCT GCCTCGGCTTCCAGCGCCTCCAGCGACTCCAGCGCCGAAAGCGAATCCTCATCGGCTCCGTCTAGCCCCTCGCCG ACCAGCCAGAAAGCGGCCCTCTCCGCTACGACGGACACGCCCAGCTCGGCACCTTCTACGCCTACGCCCTCATCC AGGCGGCCGCCTCAAAATCAGAGTCCCAGCTCCGAGCCCACCCCCTCGTCTGCCCCGAGCCCCGTGCAGACACCT TCTTCGACACCGACGCCTTCGAGATCGCCCGAGAGCAAGTCCGAAGAAAGCTCGACTTCCGAGTCCCAGCCCGAG TCGTCCTCTTCTACTTCATCCGAAGCCAAGGACGAGTCATCTCAGCCAAAGCCGACGCCCGTCGTGTCCACGTCC ATTCACACCATCACCCTGACCAATAGCGATGGCTCAAAGGTGGTGGCAACTTCGACTTCGAGGACCACGACGACG CCCGGCCTCAACTCGGACGGGGCCACCGAGACGTCCGGTATGACCACTAAGACGCGCAATACCGTCATCGGCGTC GTCGTGGGCATCGGCGGTGCCATCGCCCTGGGAGCCCTGGGCCTGATGGCCTGGCGAATCTGGGGACGCAAGAAG AACTCGGAGGAGAACGACGGCCTCATAGAGTACGACATGACCAACTCGCACCTCGAGAAGCCTAACCAGGGGAGC TCCGTCGGTCCCGGCCCGCGAAGCCCTTTCCAGTCGACGCTGGAGAACTACCACCAGCCGTCGCAGGTGAACGCG TCGTCCAACTTTTAA |
Gene | >Hirsu2|8960 ATGTTTTACCCACGATTCTCGCGCCTCTTTGTGCTGACCCTATCGCTGCTATGGGTGGCCCAAGCCGCATGGCCG AACCTGGACTTGGGTGGCCTTCGGTCGCACTTTGCCAGGCAGCTTGACGATCTCCCCGGCCTCAGCGGCACATCT GCCTCGGCTTCCAGCGCCTCCAGCGACTCCAGCGCCGAAAGCGAATCCTCATCGGCTCCGTCTAGCCCCTCGCCG ACCAGCCAGAAAGCGGCCCTCTCCGCTACGACGGACACGCCCAGCTCGGCACCTTCTACGCCTACGCCCTCATCC AGGCGGCCGCCTCAAAATCAGAGTCCCAGCTCCGAGCCCACCCCCTCGTCTGCCCCGAGCCCCGTGCAGACACCT TCTTCGACACCGACGCCTTCGAGATCGCCCGAGAGCAAGTCCGAAGAAAGCTCGACTTCCGAGTCCCAGCCCGAG TCGTCCTCTTCTACTTCATCCGAAGCCAAGGACGAGTCATCTCAGCCAAAGCCGACGCCCGTCGTGTCCACGTCC ATTCACACCATCACCCTGACCAATAGCGATGGCTCAAAGGTGGTGGCAACTTCGACTTCGAGGACCACGACGACG CCCGGCCTCAACTCGGACGGGGCCACCGAGACGTCCGGTATGACCACTAAGACGCGCAATACCGTCATCGGCGTC GTCGTGGGCATCGGCGGTGCCATCGCCCTGGGAGCCCTGGGCCTGATGGCCTGGCGAATCTGGGGACGCAAGAAG AACTCGGAGGAGAACGACGGCCTCATAGAGTACGACATGACCAACTCGCACCTCGAGAAGCCTAACCAGGGGAGC TCCGTCGGTCCCGGCCCGCGAAGCCCTTTCCAGTCGACGCTGGAGAACTACCACCAGCCGTCGCAGGTGAACGCG TCGTCCAACTTTTAA |