Protein ID | Hirsu2|8953 |
Gene name | |
Location | Contig_617:14101..15106 |
Strand | + |
Gene length (bp) | 1005 |
Transcript length (bp) | 933 |
Coding sequence length (bp) | 933 |
Protein length (aa) | 311 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01476 | LysM | LysM domain | 1.9E-08 | 233 | 276 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.155 | 0.0752 | 0.9418 | 0.1924 | 0.1446 | 0.0288 | 0.2687 | 0.3188 | 0.2808 | 0.0054 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 21 | 0.992143 |
Orthofinder run ID | 4 |
Orthogroup | 721 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|8953 MRHSGVRGVAAALLFSRAAFALSLWTSADAIPAGVPEACRKALARDIACGDSLVTAAQALSGRALGRGAAARYCT QACHDSLQAFRAEVEQHCGDAAHRMFPNSSLEQSGAVLASGLLWAYSLTCIRDSSGFCLEELYNGTREACSQCAL QYGTVMAGSPWGQGAVSRESFSSLLSSCGSDPTSYSIPPPQASSPHGSPSLSAPDAGMHEPADAAGGRAGTKAAS PACSGETYIVREGDTCVSIASAAGVATDRMIDLNRLDYDCSALAVGMKLCLQDACATHTVMANETCSSITKGREF SGIQLRSWNP* |
Coding | >Hirsu2|8953 ATGCGGCACTCTGGAGTCCGGGGCGTCGCCGCCGCCCTGCTCTTCTCCAGAGCCGCGTTCGCCCTCAGCCTCTGG ACATCCGCCGACGCCATCCCGGCCGGCGTCCCGGAAGCATGCCGCAAAGCGTTGGCGCGCGACATCGCCTGCGGC GACAGCCTCGTCACGGCCGCTCAGGCGCTGAGCGGGAGAGCCCTTGGTCGCGGTGCGGCGGCGCGGTATTGCACC CAGGCCTGTCACGACTCGCTCCAGGCGTTCCGGGCCGAGGTCGAGCAGCACTGTGGCGACGCGGCTCATCGCATG TTCCCCAATAGCAGCCTCGAGCAGTCTGGTGCTGTGCTGGCAAGCGGGCTGCTGTGGGCGTACAGCCTCACTTGC ATCCGCGACTCGTCCGGCTTCTGCCTGGAAGAGCTGTACAACGGCACCAGGGAGGCGTGCTCGCAGTGTGCTCTC CAGTACGGCACCGTCATGGCCGGCTCCCCCTGGGGACAGGGGGCCGTCAGTCGAGAGTCTTTCTCGTCCCTGCTG TCCTCGTGTGGCTCCGACCCGACGAGCTACTCGATCCCGCCGCCACAGGCGTCGTCACCACATGGAAGCCCCTCC CTGTCGGCCCCGGACGCGGGAATGCATGAGCCGGCCGACGCGGCCGGTGGAAGAGCAGGCACCAAAGCAGCGTCG CCGGCCTGCTCGGGCGAGACGTATATCGTCCGGGAGGGCGACACGTGCGTCTCCATCGCCAGCGCCGCGGGAGTG GCTACGGATCGGATGATCGACCTCAACCGCCTCGACTACGACTGCTCAGCCCTCGCGGTCGGCATGAAGCTGTGC CTGCAGGACGCATGCGCCACCCACACGGTCATGGCAAACGAGACTTGCTCCAGCATTACGAAGGGAAGGGAATTC TCCGGGATCCAGCTCCGGTCCTGGAATCCGTGA |
Transcript | >Hirsu2|8953 ATGCGGCACTCTGGAGTCCGGGGCGTCGCCGCCGCCCTGCTCTTCTCCAGAGCCGCGTTCGCCCTCAGCCTCTGG ACATCCGCCGACGCCATCCCGGCCGGCGTCCCGGAAGCATGCCGCAAAGCGTTGGCGCGCGACATCGCCTGCGGC GACAGCCTCGTCACGGCCGCTCAGGCGCTGAGCGGGAGAGCCCTTGGTCGCGGTGCGGCGGCGCGGTATTGCACC CAGGCCTGTCACGACTCGCTCCAGGCGTTCCGGGCCGAGGTCGAGCAGCACTGTGGCGACGCGGCTCATCGCATG TTCCCCAATAGCAGCCTCGAGCAGTCTGGTGCTGTGCTGGCAAGCGGGCTGCTGTGGGCGTACAGCCTCACTTGC ATCCGCGACTCGTCCGGCTTCTGCCTGGAAGAGCTGTACAACGGCACCAGGGAGGCGTGCTCGCAGTGTGCTCTC CAGTACGGCACCGTCATGGCCGGCTCCCCCTGGGGACAGGGGGCCGTCAGTCGAGAGTCTTTCTCGTCCCTGCTG TCCTCGTGTGGCTCCGACCCGACGAGCTACTCGATCCCGCCGCCACAGGCGTCGTCACCACATGGAAGCCCCTCC CTGTCGGCCCCGGACGCGGGAATGCATGAGCCGGCCGACGCGGCCGGTGGAAGAGCAGGCACCAAAGCAGCGTCG CCGGCCTGCTCGGGCGAGACGTATATCGTCCGGGAGGGCGACACGTGCGTCTCCATCGCCAGCGCCGCGGGAGTG GCTACGGATCGGATGATCGACCTCAACCGCCTCGACTACGACTGCTCAGCCCTCGCGGTCGGCATGAAGCTGTGC CTGCAGGACGCATGCGCCACCCACACGGTCATGGCAAACGAGACTTGCTCCAGCATTACGAAGGGAAGGGAATTC TCCGGGATCCAGCTCCGGTCCTGGAATCCGTGA |
Gene | >Hirsu2|8953 ATGCGGCACTCTGGAGTCCGGGGCGTCGCCGCCGCCCTGCTCTTCTCCAGAGCCGCGTTCGCCCTCAGCCTCTGG ACATCCGCCGACGCCATCCCGGCCGGCGTCCCGGAAGCATGCCGCAAAGCGTTGGCGCGCGACATCGCCTGCGGC GACAGCCTCGTCACGGCCGCTCAGGCGCTGAGCGGGAGAGCCCTTGGTCGCGGTGCGGCGGCGCGGTATTGCACC CAGGCCTGTCACGACTCGCTCCAGGCGTTCCGGGCCGAGGTCGAGCAGCACTGTGGCGACGCGGCTCATCGCATG TTCCCCAATAGCAGCCTCGAGCAGTCTGGTGCTGTGCTGGCAAGCGGGCTGCTGTGGGCGTACAGCCTCACTTGC ATCCGCGACTCGTGAGACGTCATCCCGGCCGCAACCGCCATCCCAACCCGCCCGGTAACTGAAGACTAACACGGT CGGCCTAGGTCCGGCTTCTGCCTGGAAGAGCTGTACAACGGCACCAGGGAGGCGTGCTCGCAGTGTGCTCTCCAG TACGGCACCGTCATGGCCGGCTCCCCCTGGGGACAGGGGGCCGTCAGTCGAGAGTCTTTCTCGTCCCTGCTGTCC TCGTGTGGCTCCGACCCGACGAGCTACTCGATCCCGCCGCCACAGGCGTCGTCACCACATGGAAGCCCCTCCCTG TCGGCCCCGGACGCGGGAATGCATGAGCCGGCCGACGCGGCCGGTGGAAGAGCAGGCACCAAAGCAGCGTCGCCG GCCTGCTCGGGCGAGACGTATATCGTCCGGGAGGGCGACACGTGCGTCTCCATCGCCAGCGCCGCGGGAGTGGCT ACGGATCGGATGATCGACCTCAACCGCCTCGACTACGACTGCTCAGCCCTCGCGGTCGGCATGAAGCTGTGCCTG CAGGACGCATGCGCCACCCACACGGTCATGGCAAACGAGACTTGCTCCAGCATTACGAAGGGAAGGGAATTCTCC GGGATCCAGCTCCGGTCCTGGAATCCGTGA |