© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8950 |
| Gene name | |
| Location | Contig_617:5676..6960 |
| Strand | - |
| Gene length (bp) | 1284 |
| Transcript length (bp) | 771 |
| Coding sequence length (bp) | 771 |
| Protein length (aa) | 257 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04117 | Mpv17_PMP22 | Mpv17 / PMP22 family | 4.8E-21 | 190 | 250 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14142|SYM1_SCHPO | Protein sym1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sym1 PE=3 SV=1 | 37 | 256 | 4.0E-48 |
| sp|Q08743|YO292_YEAST | Vacuolar membrane protein YOR292C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR292C PE=1 SV=1 | 6 | 255 | 2.0E-35 |
| sp|Q10244|YD1E_SCHPO | Uncharacterized protein C4G9.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4G9.14 PE=3 SV=1 | 32 | 255 | 1.0E-34 |
| sp|Q4WDZ0|SYM1_ASPFU | Protein sym1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sym1 PE=3 SV=1 | 51 | 253 | 9.0E-28 |
| sp|Q4IPX8|SYM1_GIBZE | Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SYM1 PE=3 SV=1 | 45 | 255 | 1.0E-23 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14142|SYM1_SCHPO | Protein sym1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sym1 PE=3 SV=1 | 37 | 256 | 4.0E-48 |
| sp|Q08743|YO292_YEAST | Vacuolar membrane protein YOR292C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR292C PE=1 SV=1 | 6 | 255 | 2.0E-35 |
| sp|Q10244|YD1E_SCHPO | Uncharacterized protein C4G9.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4G9.14 PE=3 SV=1 | 32 | 255 | 1.0E-34 |
| sp|Q4WDZ0|SYM1_ASPFU | Protein sym1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sym1 PE=3 SV=1 | 51 | 253 | 9.0E-28 |
| sp|Q4IPX8|SYM1_GIBZE | Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SYM1 PE=3 SV=1 | 45 | 255 | 1.0E-23 |
| sp|Q6BMY0|SYM1_DEBHA | Protein SYM1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SYM1 PE=3 SV=1 | 106 | 250 | 4.0E-21 |
| sp|Q6CIY7|SYM1_KLULA | Protein SYM1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SYM1 PE=3 SV=1 | 76 | 254 | 6.0E-20 |
| sp|Q754F0|SYM1_ASHGO | Protein SYM1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SYM1 PE=3 SV=1 | 145 | 255 | 6.0E-20 |
| sp|Q7SCY7|SYM1_NEUCR | Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sym-1 PE=3 SV=2 | 52 | 255 | 8.0E-20 |
| sp|P0CQ38|SYM1_CRYNJ | Protein SYM1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SYM1 PE=3 SV=1 | 38 | 255 | 3.0E-19 |
| sp|P0CQ39|SYM1_CRYNB | Protein SYM1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SYM1 PE=3 SV=1 | 38 | 255 | 3.0E-19 |
| sp|Q59Q43|SYM1_CANAL | Protein SYM1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SYM1 PE=3 SV=1 | 44 | 250 | 7.0E-19 |
| sp|Q66GV0|MPV17_XENLA | Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2 | 125 | 250 | 3.0E-18 |
| sp|Q6FXJ3|SYM1_CANGA | Protein SYM1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SYM1 PE=3 SV=1 | 124 | 255 | 3.0E-18 |
| sp|Q2TXA2|SYM1_ASPOR | Protein sym1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sym1 PE=3 SV=1 | 51 | 256 | 1.0E-17 |
| sp|Q06563|SYM1_YEAST | Protein SYM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SYM1 PE=1 SV=1 | 113 | 254 | 2.0E-17 |
| sp|Q54FR4|PX24D_DICDI | PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1 | 50 | 255 | 4.0E-17 |
| sp|Q6CAW5|SYM1_YARLI | Protein SYM1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SYM1 PE=3 SV=1 | 108 | 255 | 5.0E-17 |
| sp|A5D787|M17L2_BOVIN | Mpv17-like protein 2 OS=Bos taurus GN=MPV17L2 PE=2 SV=1 | 124 | 250 | 8.0E-17 |
| sp|Q567V2|M17L2_HUMAN | Mpv17-like protein 2 OS=Homo sapiens GN=MPV17L2 PE=1 SV=2 | 124 | 250 | 4.0E-16 |
| sp|Q4P9K6|SYM1_USTMA | Protein SYM1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SYM1 PE=3 SV=1 | 125 | 255 | 1.0E-15 |
| sp|Q54GD8|PX24C_DICDI | PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1 | 125 | 251 | 5.0E-15 |
| sp|Q2KIY1|PXMP2_BOVIN | Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3 | 131 | 250 | 8.0E-15 |
| sp|Q6DIY8|M17L2_XENTR | Mpv17-like protein 2 OS=Xenopus tropicalis GN=mpv17l2 PE=2 SV=1 | 125 | 250 | 1.0E-14 |
| sp|Q5BK62|MPV17_RAT | Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1 | 133 | 250 | 1.0E-14 |
| sp|Q6DGV7|M17L2_DANRE | Mpv17-like protein 2 OS=Danio rerio GN=mpv17l2 PE=2 SV=1 | 95 | 256 | 2.0E-14 |
| sp|P19258|MPV17_MOUSE | Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=1 SV=1 | 133 | 250 | 3.0E-14 |
| sp|Q8VIK2|M17L2_MOUSE | Mpv17-like protein 2 OS=Mus musculus GN=Mpv17l2 PE=1 SV=1 | 124 | 250 | 3.0E-14 |
| sp|Q68F62|MP17L_XENLA | Mpv17-like protein OS=Xenopus laevis GN=mpv17l PE=2 SV=1 | 117 | 256 | 6.0E-14 |
| sp|Q2KIN6|MPV17_BOVIN | Protein Mpv17 OS=Bos taurus GN=MPV17 PE=2 SV=1 | 133 | 250 | 8.0E-14 |
| sp|P39210|MPV17_HUMAN | Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1 | 133 | 250 | 1.0E-13 |
| sp|Q9V492|MPV17_DROME | Mpv17-like protein OS=Drosophila melanogaster GN=CG11077 PE=2 SV=1 | 116 | 251 | 1.0E-13 |
| sp|P42925|PXMP2_MOUSE | Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=1 SV=2 | 116 | 250 | 3.0E-13 |
| sp|Q07066|PXMP2_RAT | Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2 | 36 | 250 | 3.0E-13 |
| sp|Q5TZ51|MPV17_DANRE | Protein Mpv17 OS=Danio rerio GN=mpv17 PE=2 SV=1 | 128 | 250 | 1.0E-12 |
| sp|Q54XX9|PX24B_DICDI | PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1 | 124 | 250 | 3.0E-12 |
| sp|Q60SZ2|MPV17_CAEBR | Mpv17-like protein (Fragment) OS=Caenorhabditis briggsae GN=CBG20693 PE=3 SV=2 | 124 | 251 | 6.0E-12 |
| sp|Q2QL34|MP17L_HUMAN | Mpv17-like protein OS=Homo sapiens GN=MPV17L PE=1 SV=1 | 140 | 255 | 4.0E-11 |
| sp|Q9NR77|PXMP2_HUMAN | Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3 | 36 | 250 | 2.0E-09 |
| sp|Q99MS3|MP17L_MOUSE | Mpv17-like protein OS=Mus musculus GN=Mpv17l PE=1 SV=2 | 143 | 255 | 2.0E-09 |
| sp|Q2KIK2|MP17L_BOVIN | Mpv17-like protein OS=Bos taurus GN=MPV17L PE=2 SV=1 | 140 | 253 | 6.0E-09 |
| sp|Q7YWV6|MPV17_CAEEL | Mpv17-like protein OS=Caenorhabditis elegans GN=T18D3.9 PE=3 SV=1 | 112 | 250 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 19 | 41 | 22 |
| 2 | 56 | 78 | 22 |
| 3 | 174 | 191 | 17 |
| 4 | 206 | 228 | 22 |
| 5 | 235 | 252 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8950 MPWELSRRRVARAINSKYIFGRIPVVHAVIFLIEMALVARLTAKFNTYYEERPLMTMMVTNAILGGIADTVAQGI TAIRERAVRKAGGVTKDDDFAIEIHEIGRKGTFLDRDLIPDSKALPPPFDFERLTRFMAYGFCVAPLQFKWFRFL ERAFPMTKTSAFGPAMKRVVFDQFVYAPFGVGLFFVVMTVAEGGGRRAVSNKLRDMYVPTLKANYVVWPAVQIVN FRLMPVQFQLPFVSTIGIAWTAYLSLTNASD* |
| Coding | >Hirsu2|8950 ATGCCTTGGGAACTGTCGAGGCGCCGGGTCGCGCGCGCAATCAACAGCAAATACATCTTCGGCCGCATTCCGGTG GTCCACGCCGTCATCTTCCTCATCGAGATGGCCCTCGTCGCACGCCTGACGGCCAAGTTCAATACCTACTATGAA GAACGACCGCTCATGACCATGATGGTGACAAACGCCATCCTCGGTGGCATCGCCGACACCGTCGCCCAGGGCATC ACGGCGATCCGCGAGCGCGCGGTGCGCAAGGCCGGAGGCGTGACCAAGGACGACGATTTTGCCATCGAGATACAC GAGATCGGGCGCAAGGGCACTTTTCTCGACCGGGACCTGATACCCGACTCCAAGGCGCTGCCGCCGCCCTTCGAC TTTGAGCGCTTGACGCGCTTCATGGCCTACGGTTTCTGCGTCGCGCCGCTGCAATTCAAGTGGTTCCGCTTCCTC GAGCGGGCCTTCCCCATGACCAAGACGAGCGCCTTCGGCCCGGCCATGAAGCGCGTCGTCTTCGACCAGTTCGTC TACGCTCCCTTCGGCGTCGGCCTGTTCTTCGTCGTCATGACTGTGGCCGAGGGCGGCGGCCGACGCGCCGTCAGC AACAAGCTGCGCGACATGTACGTGCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTCCAGATTGTCAAC TTCCGGCTCATGCCGGTTCAGTTCCAGCTGCCCTTCGTCTCGACCATCGGTATCGCCTGGACGGCCTACCTATCA CTGACGAACGCTTCGGACTGA |
| Transcript | >Hirsu2|8950 ATGCCTTGGGAACTGTCGAGGCGCCGGGTCGCGCGCGCAATCAACAGCAAATACATCTTCGGCCGCATTCCGGTG GTCCACGCCGTCATCTTCCTCATCGAGATGGCCCTCGTCGCACGCCTGACGGCCAAGTTCAATACCTACTATGAA GAACGACCGCTCATGACCATGATGGTGACAAACGCCATCCTCGGTGGCATCGCCGACACCGTCGCCCAGGGCATC ACGGCGATCCGCGAGCGCGCGGTGCGCAAGGCCGGAGGCGTGACCAAGGACGACGATTTTGCCATCGAGATACAC GAGATCGGGCGCAAGGGCACTTTTCTCGACCGGGACCTGATACCCGACTCCAAGGCGCTGCCGCCGCCCTTCGAC TTTGAGCGCTTGACGCGCTTCATGGCCTACGGTTTCTGCGTCGCGCCGCTGCAATTCAAGTGGTTCCGCTTCCTC GAGCGGGCCTTCCCCATGACCAAGACGAGCGCCTTCGGCCCGGCCATGAAGCGCGTCGTCTTCGACCAGTTCGTC TACGCTCCCTTCGGCGTCGGCCTGTTCTTCGTCGTCATGACTGTGGCCGAGGGCGGCGGCCGACGCGCCGTCAGC AACAAGCTGCGCGACATGTACGTGCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTCCAGATTGTCAAC TTCCGGCTCATGCCGGTTCAGTTCCAGCTGCCCTTCGTCTCGACCATCGGTATCGCCTGGACGGCCTACCTATCA CTGACGAACGCTTCGGACTGA |
| Gene | >Hirsu2|8950 ATGCCTTGGGAACTGTCGAGGCGCCGGGTCGCGCGCGCAATCAACAGCAAATACATCTTCGGCCGCATTGTACGT TTCTTTCCTTGTCTCTCCCGGCCTCTCCTCGGTGCCGGCGCCGGCGATGCTCGGTGGCTCTCGTGGCCCCGAAAT CGACGATGCCGCAAATCGTCGCCGTGCTCCACTGCGTCCCTCTTTATTGCCTCGCCCTGTCCTTCTCTCGCCTTC TCCTCCTTTCGCTTTGTCGCTCTTGTCTCGTGTCACCCACAGATCCGGATACAACCCCCCCTTTGTGCACAACGT TTGCCCCGTCGTCGCCGACGGCTAACAGCTCTACCAAACGTGACAGCCGGTGGTCCACGCCGTCATCTTCCTCAT CGAGATGGCCCTCGTCGCACGCCTGACGGCCAAGTTCAATACCTACTATGAAGAACGACCGCGTACGTACCGCTG CCTCGAGCCAATCTTCGCCCTCCCCCTCGGCAGTCACACAAGCGGAAGAAAGACAAAGACATGGGGGGTCACAAG AGGGGTCGTGTTACTCGAAAATGCCGGTGGCGACGCAGTGACATGGCGCTGACCAGCTGACCTGGCCGCAGTCAT GACCATGATGGTGACAAACGCCATCCTCGGTGGCATCGCCGACACCGTCGCCCAGGGCATCACGGCGATCCGCGA GCGCGCGGTGCGCAAGGCCGGAGGCGTGACCAAGGACGACGATTTTGCCATCGAGATACACGAGATCGGGCGCAA GGGCACTTTTCTCGACCGGGACCTGATACCCGACTCCAAGGCGCTGCCGCCGCCCTTCGACTTTGAGCGCTTGAC GCGCTTCATGGCCTACGGTTTCTGCGTCGCGCCGCTGCAATTCAAGTGGTTCCGCTTCCTCGAGCGGGCCTTCCC CATGACCAAGACGAGCGCCTTCGGCCCGGCCATGAAGCGCGTCGTCTTCGACCAGTTCGTCTACGCTCCCTTCGG CGTCGGCCTGTTCTTCGTCGTCATGACTGTGGCCGAGGGCGGCGGCCGACGCGCCGTCAGCAACAAGCTGCGCGA CATGTACGTGCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTCCAGATTGTCAACTTCCGGCTCATGCC GGTTCAGTTCCAGCTGGTAGGTCCCCCCCGGGACGCCGCATCGATTTTCCCATTTCATCGAGAAAGAGCATGCTG ACGGTCAACTTTTGACAGCCCTTCGTCTCGACCATCGGTATCGCCTGGACGGCCTACCTATCACTGACGAACGCT TCGGACTGA |