Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|8950
Gene name
LocationContig_617:5676..6960
Strand-
Gene length (bp)1284
Transcript length (bp)771
Coding sequence length (bp)771
Protein length (aa) 257

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04117 Mpv17_PMP22 Mpv17 / PMP22 family 1.1E-20 190 250

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O14142|SYM1_SCHPO Protein sym1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sym1 PE=3 SV=1 37 256 4.0E-48
sp|Q08743|YO292_YEAST Vacuolar membrane protein YOR292C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR292C PE=1 SV=1 6 255 2.0E-35
sp|Q10244|YD1E_SCHPO Uncharacterized protein C4G9.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4G9.14 PE=3 SV=1 32 255 1.0E-34
sp|Q4WDZ0|SYM1_ASPFU Protein sym1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sym1 PE=3 SV=1 51 253 9.0E-28
sp|Q4IPX8|SYM1_GIBZE Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SYM1 PE=3 SV=1 45 255 1.0E-23
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Swissprot ID Swissprot Description Start End E-value
sp|O14142|SYM1_SCHPO Protein sym1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sym1 PE=3 SV=1 37 256 4.0E-48
sp|Q08743|YO292_YEAST Vacuolar membrane protein YOR292C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR292C PE=1 SV=1 6 255 2.0E-35
sp|Q10244|YD1E_SCHPO Uncharacterized protein C4G9.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4G9.14 PE=3 SV=1 32 255 1.0E-34
sp|Q4WDZ0|SYM1_ASPFU Protein sym1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sym1 PE=3 SV=1 51 253 9.0E-28
sp|Q4IPX8|SYM1_GIBZE Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SYM1 PE=3 SV=1 45 255 1.0E-23
sp|Q6BMY0|SYM1_DEBHA Protein SYM1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SYM1 PE=3 SV=1 106 250 4.0E-21
sp|Q6CIY7|SYM1_KLULA Protein SYM1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SYM1 PE=3 SV=1 76 254 6.0E-20
sp|Q754F0|SYM1_ASHGO Protein SYM1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SYM1 PE=3 SV=1 145 255 6.0E-20
sp|Q7SCY7|SYM1_NEUCR Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sym-1 PE=3 SV=2 52 255 8.0E-20
sp|P0CQ38|SYM1_CRYNJ Protein SYM1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SYM1 PE=3 SV=1 38 255 3.0E-19
sp|P0CQ39|SYM1_CRYNB Protein SYM1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SYM1 PE=3 SV=1 38 255 3.0E-19
sp|Q59Q43|SYM1_CANAL Protein SYM1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SYM1 PE=3 SV=1 44 250 7.0E-19
sp|Q66GV0|MPV17_XENLA Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2 125 250 3.0E-18
sp|Q6FXJ3|SYM1_CANGA Protein SYM1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SYM1 PE=3 SV=1 124 255 3.0E-18
sp|Q2TXA2|SYM1_ASPOR Protein sym1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sym1 PE=3 SV=1 51 256 1.0E-17
sp|Q06563|SYM1_YEAST Protein SYM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SYM1 PE=1 SV=1 113 254 2.0E-17
sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1 50 255 4.0E-17
sp|Q6CAW5|SYM1_YARLI Protein SYM1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SYM1 PE=3 SV=1 108 255 5.0E-17
sp|A5D787|M17L2_BOVIN Mpv17-like protein 2 OS=Bos taurus GN=MPV17L2 PE=2 SV=1 124 250 8.0E-17
sp|Q567V2|M17L2_HUMAN Mpv17-like protein 2 OS=Homo sapiens GN=MPV17L2 PE=1 SV=2 124 250 4.0E-16
sp|Q4P9K6|SYM1_USTMA Protein SYM1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SYM1 PE=3 SV=1 125 255 1.0E-15
sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1 125 251 5.0E-15
sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3 131 250 8.0E-15
sp|Q6DIY8|M17L2_XENTR Mpv17-like protein 2 OS=Xenopus tropicalis GN=mpv17l2 PE=2 SV=1 125 250 1.0E-14
sp|Q5BK62|MPV17_RAT Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1 133 250 1.0E-14
sp|Q6DGV7|M17L2_DANRE Mpv17-like protein 2 OS=Danio rerio GN=mpv17l2 PE=2 SV=1 95 256 2.0E-14
sp|P19258|MPV17_MOUSE Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=1 SV=1 133 250 3.0E-14
sp|Q8VIK2|M17L2_MOUSE Mpv17-like protein 2 OS=Mus musculus GN=Mpv17l2 PE=1 SV=1 124 250 3.0E-14
sp|Q68F62|MP17L_XENLA Mpv17-like protein OS=Xenopus laevis GN=mpv17l PE=2 SV=1 117 256 6.0E-14
sp|Q2KIN6|MPV17_BOVIN Protein Mpv17 OS=Bos taurus GN=MPV17 PE=2 SV=1 133 250 8.0E-14
sp|P39210|MPV17_HUMAN Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1 133 250 1.0E-13
sp|Q9V492|MPV17_DROME Mpv17-like protein OS=Drosophila melanogaster GN=CG11077 PE=2 SV=1 116 251 1.0E-13
sp|P42925|PXMP2_MOUSE Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=1 SV=2 116 250 3.0E-13
sp|Q07066|PXMP2_RAT Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2 36 250 3.0E-13
sp|Q5TZ51|MPV17_DANRE Protein Mpv17 OS=Danio rerio GN=mpv17 PE=2 SV=1 128 250 1.0E-12
sp|Q54XX9|PX24B_DICDI PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1 124 250 3.0E-12
sp|Q60SZ2|MPV17_CAEBR Mpv17-like protein (Fragment) OS=Caenorhabditis briggsae GN=CBG20693 PE=3 SV=2 124 251 6.0E-12
sp|Q2QL34|MP17L_HUMAN Mpv17-like protein OS=Homo sapiens GN=MPV17L PE=1 SV=1 140 255 4.0E-11
sp|Q9NR77|PXMP2_HUMAN Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3 36 250 2.0E-09
sp|Q99MS3|MP17L_MOUSE Mpv17-like protein OS=Mus musculus GN=Mpv17l PE=1 SV=2 143 255 2.0E-09
sp|Q2KIK2|MP17L_BOVIN Mpv17-like protein OS=Bos taurus GN=MPV17L PE=2 SV=1 140 253 6.0E-09
sp|Q7YWV6|MPV17_CAEEL Mpv17-like protein OS=Caenorhabditis elegans GN=T18D3.9 PE=3 SV=1 112 250 2.0E-07
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0044425 membrane part No
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 29 0.5

Transmembrane Domains

Domain # Start End Length
1 19 41 22
2 56 78 22
3 174 191 17
4 206 228 22
5 235 252 17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|8950
MPWELSRRRVARAINSKYIFGRIPVVHAVIFLIEMALVARLTAKFNTYYEERPLMTMMVTNAILGGIADTVAQGI
TAIRERAVRKAGGVTKDDDFAIEIHEIGRKGTFLDRDLIPDSKALPPPFDFERLTRFMAYGFCVAPLQFKWFRFL
ERAFPMTKTSAFGPAMKRVVFDQFVYAPFGVGLFFVVMTVAEGGGRRAVSNKLRDMYVPTLKANYVVWPAVQIVN
FRLMPVQFQLPFVSTIGIAWTAYLSLTNASD*
Coding >Hirsu2|8950
ATGCCTTGGGAACTGTCGAGGCGCCGGGTCGCGCGCGCAATCAACAGCAAATACATCTTCGGCCGCATTCCGGTG
GTCCACGCCGTCATCTTCCTCATCGAGATGGCCCTCGTCGCACGCCTGACGGCCAAGTTCAATACCTACTATGAA
GAACGACCGCTCATGACCATGATGGTGACAAACGCCATCCTCGGTGGCATCGCCGACACCGTCGCCCAGGGCATC
ACGGCGATCCGCGAGCGCGCGGTGCGCAAGGCCGGAGGCGTGACCAAGGACGACGATTTTGCCATCGAGATACAC
GAGATCGGGCGCAAGGGCACTTTTCTCGACCGGGACCTGATACCCGACTCCAAGGCGCTGCCGCCGCCCTTCGAC
TTTGAGCGCTTGACGCGCTTCATGGCCTACGGTTTCTGCGTCGCGCCGCTGCAATTCAAGTGGTTCCGCTTCCTC
GAGCGGGCCTTCCCCATGACCAAGACGAGCGCCTTCGGCCCGGCCATGAAGCGCGTCGTCTTCGACCAGTTCGTC
TACGCTCCCTTCGGCGTCGGCCTGTTCTTCGTCGTCATGACTGTGGCCGAGGGCGGCGGCCGACGCGCCGTCAGC
AACAAGCTGCGCGACATGTACGTGCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTCCAGATTGTCAAC
TTCCGGCTCATGCCGGTTCAGTTCCAGCTGCCCTTCGTCTCGACCATCGGTATCGCCTGGACGGCCTACCTATCA
CTGACGAACGCTTCGGACTGA
Transcript >Hirsu2|8950
ATGCCTTGGGAACTGTCGAGGCGCCGGGTCGCGCGCGCAATCAACAGCAAATACATCTTCGGCCGCATTCCGGTG
GTCCACGCCGTCATCTTCCTCATCGAGATGGCCCTCGTCGCACGCCTGACGGCCAAGTTCAATACCTACTATGAA
GAACGACCGCTCATGACCATGATGGTGACAAACGCCATCCTCGGTGGCATCGCCGACACCGTCGCCCAGGGCATC
ACGGCGATCCGCGAGCGCGCGGTGCGCAAGGCCGGAGGCGTGACCAAGGACGACGATTTTGCCATCGAGATACAC
GAGATCGGGCGCAAGGGCACTTTTCTCGACCGGGACCTGATACCCGACTCCAAGGCGCTGCCGCCGCCCTTCGAC
TTTGAGCGCTTGACGCGCTTCATGGCCTACGGTTTCTGCGTCGCGCCGCTGCAATTCAAGTGGTTCCGCTTCCTC
GAGCGGGCCTTCCCCATGACCAAGACGAGCGCCTTCGGCCCGGCCATGAAGCGCGTCGTCTTCGACCAGTTCGTC
TACGCTCCCTTCGGCGTCGGCCTGTTCTTCGTCGTCATGACTGTGGCCGAGGGCGGCGGCCGACGCGCCGTCAGC
AACAAGCTGCGCGACATGTACGTGCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTCCAGATTGTCAAC
TTCCGGCTCATGCCGGTTCAGTTCCAGCTGCCCTTCGTCTCGACCATCGGTATCGCCTGGACGGCCTACCTATCA
CTGACGAACGCTTCGGACTGA
Gene >Hirsu2|8950
ATGCCTTGGGAACTGTCGAGGCGCCGGGTCGCGCGCGCAATCAACAGCAAATACATCTTCGGCCGCATTGTACGT
TTCTTTCCTTGTCTCTCCCGGCCTCTCCTCGGTGCCGGCGCCGGCGATGCTCGGTGGCTCTCGTGGCCCCGAAAT
CGACGATGCCGCAAATCGTCGCCGTGCTCCACTGCGTCCCTCTTTATTGCCTCGCCCTGTCCTTCTCTCGCCTTC
TCCTCCTTTCGCTTTGTCGCTCTTGTCTCGTGTCACCCACAGATCCGGATACAACCCCCCCTTTGTGCACAACGT
TTGCCCCGTCGTCGCCGACGGCTAACAGCTCTACCAAACGTGACAGCCGGTGGTCCACGCCGTCATCTTCCTCAT
CGAGATGGCCCTCGTCGCACGCCTGACGGCCAAGTTCAATACCTACTATGAAGAACGACCGCGTACGTACCGCTG
CCTCGAGCCAATCTTCGCCCTCCCCCTCGGCAGTCACACAAGCGGAAGAAAGACAAAGACATGGGGGGTCACAAG
AGGGGTCGTGTTACTCGAAAATGCCGGTGGCGACGCAGTGACATGGCGCTGACCAGCTGACCTGGCCGCAGTCAT
GACCATGATGGTGACAAACGCCATCCTCGGTGGCATCGCCGACACCGTCGCCCAGGGCATCACGGCGATCCGCGA
GCGCGCGGTGCGCAAGGCCGGAGGCGTGACCAAGGACGACGATTTTGCCATCGAGATACACGAGATCGGGCGCAA
GGGCACTTTTCTCGACCGGGACCTGATACCCGACTCCAAGGCGCTGCCGCCGCCCTTCGACTTTGAGCGCTTGAC
GCGCTTCATGGCCTACGGTTTCTGCGTCGCGCCGCTGCAATTCAAGTGGTTCCGCTTCCTCGAGCGGGCCTTCCC
CATGACCAAGACGAGCGCCTTCGGCCCGGCCATGAAGCGCGTCGTCTTCGACCAGTTCGTCTACGCTCCCTTCGG
CGTCGGCCTGTTCTTCGTCGTCATGACTGTGGCCGAGGGCGGCGGCCGACGCGCCGTCAGCAACAAGCTGCGCGA
CATGTACGTGCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTCCAGATTGTCAACTTCCGGCTCATGCC
GGTTCAGTTCCAGCTGGTAGGTCCCCCCCGGGACGCCGCATCGATTTTCCCATTTCATCGAGAAAGAGCATGCTG
ACGGTCAACTTTTGACAGCCCTTCGTCTCGACCATCGGTATCGCCTGGACGGCCTACCTATCACTGACGAACGCT
TCGGACTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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