Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|890
Gene name
LocationContig_1187:6421..7956
Strand+
Gene length (bp)1535
Transcript length (bp)1386
Coding sequence length (bp)1386
Protein length (aa) 462

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05786 Cnd2 Condensin complex subunit 2 1.4E-175 21 453

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9Y7R3|CND2_SCHPO Condensin complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cnd2 PE=1 SV=1 26 389 1.0E-84
sp|P38170|CND2_YEAST Condensin complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRN1 PE=1 SV=3 106 287 8.0E-53
sp|Q564K3|CND2_ARATH Condensin complex subunit 2 OS=Arabidopsis thaliana GN=CAPH PE=1 SV=1 109 306 1.0E-36
sp|O13067|CND2_XENLA Condensin complex subunit 2 OS=Xenopus laevis GN=ncaph PE=1 SV=1 58 298 3.0E-18
sp|Q8C156|CND2_MOUSE Condensin complex subunit 2 OS=Mus musculus GN=Ncaph PE=1 SV=1 26 286 3.0E-14
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Swissprot ID Swissprot Description Start End E-value
sp|Q9Y7R3|CND2_SCHPO Condensin complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cnd2 PE=1 SV=1 26 389 1.0E-84
sp|P38170|CND2_YEAST Condensin complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRN1 PE=1 SV=3 106 287 8.0E-53
sp|Q564K3|CND2_ARATH Condensin complex subunit 2 OS=Arabidopsis thaliana GN=CAPH PE=1 SV=1 109 306 1.0E-36
sp|O13067|CND2_XENLA Condensin complex subunit 2 OS=Xenopus laevis GN=ncaph PE=1 SV=1 58 298 3.0E-18
sp|Q8C156|CND2_MOUSE Condensin complex subunit 2 OS=Mus musculus GN=Ncaph PE=1 SV=1 26 286 3.0E-14
sp|Q15003|CND2_HUMAN Condensin complex subunit 2 OS=Homo sapiens GN=NCAPH PE=1 SV=3 24 286 1.0E-13
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GO

GO Term Description Terminal node
GO:0000796 condensin complex Yes
GO:0007076 mitotic chromosome condensation Yes
GO:0005575 cellular_component No
GO:0044446 intracellular organelle part No
GO:0044422 organelle part No
GO:0044815 DNA packaging complex No
GO:0008150 biological_process No
GO:0051276 chromosome organization No
GO:0006323 DNA packaging No
GO:0030261 chromosome condensation No
GO:1903047 mitotic cell cycle process No
GO:0071103 DNA conformation change No
GO:0022402 cell cycle process No
GO:0044464 cell part No
GO:0006996 organelle organization No
GO:0044427 chromosomal part No
GO:0071840 cellular component organization or biogenesis No
GO:0016043 cellular component organization No
GO:0044424 intracellular part No
GO:0032991 protein-containing complex No
GO:0009987 cellular process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|890
MPRVAQVPRAGGVRSTSGSIAASPFKSPVKIPLNDDAQEKGRRMNSRKALHEKQINQIKAAATPRKTSSRLDDLE
NASPGSAPGTPRGGDNGDEPITVGGVTPMKRVPILANFEEWMKMATDNKINATNSWNFALIDYFHDMSLLKEGDG
VNFQKASCTLDGCVKIYTNRVDSVATETGKLLSGLADSNSAKKKDRDGDEAEGADSEEEVDEDGNVRKKAKKKTQ
RSSEATLAPSFSSLQLKKFELEFAVDPLFKKASADFDEGGAKGLLLNHLMIDSQGRIVFDSSDDSGDVSTADKPK
DGETRDEVEETADSSAVRADAEKGAEEEEGRGGEGDEATISIDLASLSQRFFPDLARLDELDVCPSLKSFDLGDP
SGSMDIPFLKAADDWKADQDKDKSGSAPGDKSGMFIDEEAPAGFDDEELGLGSFDVGEDVAFGEGGEAWAREAAV
GPQMRAAATTT*
Coding >Hirsu2|890
ATGCCGCGCGTCGCTCAAGTTCCACGCGCCGGAGGCGTCAGGTCGACGTCCGGTTCAATCGCGGCATCGCCCTTC
AAGTCCCCCGTCAAGATCCCGTTGAACGACGATGCGCAGGAGAAGGGCCGGCGGATGAACTCGCGAAAGGCCCTG
CACGAAAAGCAAATCAACCAGATCAAGGCCGCGGCCACGCCGCGCAAAACAAGCAGCAGGCTGGACGACCTGGAG
AATGCCTCGCCGGGCTCCGCCCCGGGCACCCCCCGCGGCGGCGACAATGGCGACGAGCCCATCACGGTGGGCGGC
GTGACGCCCATGAAGCGCGTCCCCATCCTCGCCAACTTCGAGGAGTGGATGAAGATGGCGACGGACAACAAGATC
AACGCGACCAACTCGTGGAACTTTGCCCTCATCGACTACTTCCACGACATGTCCCTGCTCAAGGAGGGCGACGGC
GTCAACTTCCAAAAGGCCAGCTGCACCCTCGACGGCTGCGTCAAGATCTACACCAACAGGGTCGACAGCGTCGCG
ACCGAGACGGGGAAGCTGCTGAGCGGCCTCGCCGACAGCAACAGCGCCAAGAAGAAGGACCGCGACGGCGACGAG
GCCGAGGGCGCCGACAGCGAAGAAGAGGTCGATGAGGACGGTAACGTGCGGAAGAAGGCCAAGAAGAAGACGCAG
CGCTCATCGGAAGCGACCCTCGCCCCGTCCTTCAGCTCGCTTCAGCTCAAGAAGTTCGAGCTCGAGTTTGCCGTC
GATCCGCTCTTCAAAAAGGCCTCGGCCGACTTTGACGAAGGCGGCGCCAAGGGCCTGCTTCTCAACCATCTCATG
ATCGACTCCCAGGGGCGCATCGTGTTCGACAGCAGCGACGACTCGGGAGACGTGTCGACGGCCGACAAGCCGAAA
GACGGCGAGACCCGCGACGAGGTCGAGGAGACTGCGGACTCGTCCGCGGTGCGCGCCGATGCCGAGAAGGGAGCG
GAGGAGGAGGAGGGCCGGGGCGGTGAAGGGGACGAGGCGACCATATCCATTGATCTGGCCTCTCTCAGTCAGAGA
TTTTTCCCCGACCTTGCCCGGCTGGACGAACTGGACGTGTGTCCGTCGCTGAAGAGCTTCGACCTCGGCGACCCC
TCGGGCTCCATGGACATACCCTTCCTGAAGGCCGCGGACGACTGGAAGGCGGACCAGGACAAGGACAAGTCCGGG
AGCGCCCCCGGCGACAAGTCGGGCATGTTCATCGACGAGGAGGCCCCGGCCGGCTTCGACGACGAAGAGCTCGGC
CTCGGCAGCTTCGACGTGGGCGAAGACGTCGCCTTCGGCGAGGGCGGCGAGGCTTGGGCGCGCGAGGCGGCCGTG
GGCCCGCAGATGCGCGCGGCGGCGACGACTACGTGA
Transcript >Hirsu2|890
ATGCCGCGCGTCGCTCAAGTTCCACGCGCCGGAGGCGTCAGGTCGACGTCCGGTTCAATCGCGGCATCGCCCTTC
AAGTCCCCCGTCAAGATCCCGTTGAACGACGATGCGCAGGAGAAGGGCCGGCGGATGAACTCGCGAAAGGCCCTG
CACGAAAAGCAAATCAACCAGATCAAGGCCGCGGCCACGCCGCGCAAAACAAGCAGCAGGCTGGACGACCTGGAG
AATGCCTCGCCGGGCTCCGCCCCGGGCACCCCCCGCGGCGGCGACAATGGCGACGAGCCCATCACGGTGGGCGGC
GTGACGCCCATGAAGCGCGTCCCCATCCTCGCCAACTTCGAGGAGTGGATGAAGATGGCGACGGACAACAAGATC
AACGCGACCAACTCGTGGAACTTTGCCCTCATCGACTACTTCCACGACATGTCCCTGCTCAAGGAGGGCGACGGC
GTCAACTTCCAAAAGGCCAGCTGCACCCTCGACGGCTGCGTCAAGATCTACACCAACAGGGTCGACAGCGTCGCG
ACCGAGACGGGGAAGCTGCTGAGCGGCCTCGCCGACAGCAACAGCGCCAAGAAGAAGGACCGCGACGGCGACGAG
GCCGAGGGCGCCGACAGCGAAGAAGAGGTCGATGAGGACGGTAACGTGCGGAAGAAGGCCAAGAAGAAGACGCAG
CGCTCATCGGAAGCGACCCTCGCCCCGTCCTTCAGCTCGCTTCAGCTCAAGAAGTTCGAGCTCGAGTTTGCCGTC
GATCCGCTCTTCAAAAAGGCCTCGGCCGACTTTGACGAAGGCGGCGCCAAGGGCCTGCTTCTCAACCATCTCATG
ATCGACTCCCAGGGGCGCATCGTGTTCGACAGCAGCGACGACTCGGGAGACGTGTCGACGGCCGACAAGCCGAAA
GACGGCGAGACCCGCGACGAGGTCGAGGAGACTGCGGACTCGTCCGCGGTGCGCGCCGATGCCGAGAAGGGAGCG
GAGGAGGAGGAGGGCCGGGGCGGTGAAGGGGACGAGGCGACCATATCCATTGATCTGGCCTCTCTCAGTCAGAGA
TTTTTCCCCGACCTTGCCCGGCTGGACGAACTGGACGTGTGTCCGTCGCTGAAGAGCTTCGACCTCGGCGACCCC
TCGGGCTCCATGGACATACCCTTCCTGAAGGCCGCGGACGACTGGAAGGCGGACCAGGACAAGGACAAGTCCGGG
AGCGCCCCCGGCGACAAGTCGGGCATGTTCATCGACGAGGAGGCCCCGGCCGGCTTCGACGACGAAGAGCTCGGC
CTCGGCAGCTTCGACGTGGGCGAAGACGTCGCCTTCGGCGAGGGCGGCGAGGCTTGGGCGCGCGAGGCGGCCGTG
GGCCCGCAGATGCGCGCGGCGGCGACGACTACGTGA
Gene >Hirsu2|890
ATGCCGCGCGTCGCTCAAGTTCCACGCGCCGGAGGCGTCAGGTCGACGTCCGGTTCAATCGCGGCATCGCCCTTC
AAGTCCCCCGTCAAGTGAGTTTGCGCCTCGCCTCTCCCCCTCGGCCGCTTCTCACACGGCCTCGCTCGCCAGGAT
CCCGTTGAACGACGATGCGCAGGAGAAGGGCCGGCGGATGAACTCGCGAAAGGCCCTGCACGAAAAGCAAATCAA
CCAGATCAAGGCCGCGGCCACGCCGCGCAAAACAAGCAGCAGGCTGGACGACCTGGAGAATGCCTCGCCGGGCTC
CGCCCCGGGCACCCCCCGCGGCGGCGACAATGGCGACGAGCCCATCACGGTGGGCGGCGTGACGCCCATGAAGCG
CGTCCCCATCCTCGCCAACTTCGAGGAGTGGATGAAGATGGCGACGGACAACAAGATCAACGCGACCAACTCGTG
GAACTTTGCCCTCATCGACTACTTCCACGACATGTCCCTGCTCAAGGAGGGCGACGGCGTCAACTTCCAAAAGGC
CAGCTGCACCCTCGACGGCTGCGTCAAGATCTACACCAACAGGGTCGACAGCGTCGCGACCGAGACGGGGAAGCT
GCTGAGCGGCCTCGCCGACAGCAACAGCGCCAAGAAGAAGGACCGCGACGGCGACGAGGCCGAGGGCGCCGACAG
CGAAGAAGAGGTCGATGAGGACGGTAACGTGCGGAAGAAGGCCAAGAAGAAGGTGAGATCCGGCCGATGCGACCG
GGTGCGTCTTCGCTAACGGCCTCAACAGACGCAGCGCTCATCGGAAGCGACCCTCGCCCCGTCCTTCAGCTCGCT
TCAGCTCAAGAAGTTCGAGCTCGAGTTTGCCGTCGATCCGCTCTTCAAAAAGGCCTCGGCCGACTTTGACGAAGG
CGGCGCCAAGGGCCTGCTTCTCAACCATCTCATGATCGACTCCCAGGGGCGCATCGTGTTCGACAGCAGCGACGA
CTCGGGAGACGTGTCGACGGCCGACAAGCCGAAAGACGGCGAGACCCGCGACGAGGTCGAGGAGACTGCGGACTC
GTCCGCGGTGCGCGCCGATGCCGAGAAGGGAGCGGAGGAGGAGGAGGGCCGGGGCGGTGAAGGGGACGAGGCGAC
CATATCCATTGATCTGGCCTCTCTCAGTCAGAGATTTTTCCCCGACCTTGCCCGGCTGGACGAACTGGACGTGTG
TCCGTCGCTGAAGAGCTTCGACCTCGGCGACCCCTCGGGCTCCATGGACATACCCTTCCTGAAGGCCGCGGACGA
CTGGAAGGCGGACCAGGACAAGGACAAGTCCGGGAGCGCCCCCGGCGACAAGTCGGGCATGTTCATCGACGAGGA
GGCCCCGGCCGGCTTCGACGACGAAGAGCTCGGCCTCGGCAGCTTCGACGTGGGCGAAGACGTCGCCTTCGGCGA
GGGCGGCGAGGCTTGGGCGCGCGAGGCGGCCGTGGGCCCGCAGATGCGCGCGTTCGACGACGGCCTGGGCGACGG
CGGCGGCGACGGAGAGGGCGGCGACGACTACGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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