© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8883 |
| Gene name | |
| Location | Contig_608:5789..7458 |
| Strand | + |
| Gene length (bp) | 1669 |
| Transcript length (bp) | 1542 |
| Coding sequence length (bp) | 1542 |
| Protein length (aa) | 514 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 8.7E-36 | 67 | 435 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6J0|YHDC_SCHPO | Uncharacterized transporter C1683.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.12 PE=3 SV=1 | 52 | 488 | 9.0E-48 |
| sp|Q44470|TUB4_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 48 | 444 | 3.0E-46 |
| sp|P70786|TUB3_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 51 | 363 | 1.0E-43 |
| sp|Q9US44|YIZG_SCHPO | Uncharacterized transporter C1002.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1002.16c PE=3 SV=1 | 1 | 423 | 1.0E-40 |
| sp|Q10097|YAOI_SCHPO | Uncharacterized transporter C11D3.18C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.18c PE=3 SV=1 | 21 | 497 | 2.0E-40 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6J0|YHDC_SCHPO | Uncharacterized transporter C1683.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.12 PE=3 SV=1 | 52 | 488 | 9.0E-48 |
| sp|Q44470|TUB4_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 48 | 444 | 3.0E-46 |
| sp|P70786|TUB3_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 51 | 363 | 1.0E-43 |
| sp|Q9US44|YIZG_SCHPO | Uncharacterized transporter C1002.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1002.16c PE=3 SV=1 | 1 | 423 | 1.0E-40 |
| sp|Q10097|YAOI_SCHPO | Uncharacterized transporter C11D3.18C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.18c PE=3 SV=1 | 21 | 497 | 2.0E-40 |
| sp|Q9US37|YFZ4_SCHPO | Uncharacterized transporter C1039.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.04 PE=3 SV=1 | 52 | 503 | 2.0E-34 |
| sp|O43000|LIZ1_SCHPO | Pantothenate transporter liz1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=liz1 PE=2 SV=2 | 50 | 433 | 3.0E-32 |
| sp|P25621|FEN2_YEAST | Pantothenate transporter FEN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FEN2 PE=1 SV=1 | 35 | 428 | 2.0E-31 |
| sp|P53322|TNA1_YEAST | High-affinity nicotinic acid transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TNA1 PE=1 SV=1 | 45 | 512 | 3.0E-30 |
| sp|Q88FY6|NICT_PSEPK | Putative metabolite transport protein NicT OS=Pseudomonas putida (strain KT2440) GN=nicT PE=2 SV=1 | 40 | 371 | 2.0E-27 |
| sp|P76470|RHMT_ECOLI | Inner membrane transport protein RhmT OS=Escherichia coli (strain K12) GN=rhmT PE=1 SV=2 | 57 | 482 | 1.0E-26 |
| sp|O94491|YC7A_SCHPO | Uncharacterized transporter C417.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC417.10 PE=3 SV=1 | 42 | 336 | 7.0E-25 |
| sp|P40445|YIQ6_YEAST | Uncharacterized transporter YIL166C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL166C PE=1 SV=1 | 52 | 458 | 2.0E-23 |
| sp|P15365|DAL5_YEAST | Allantoate permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DAL5 PE=1 SV=1 | 18 | 511 | 3.0E-23 |
| sp|P39709|SEO1_YEAST | Probable transporter SEO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEO1 PE=1 SV=1 | 52 | 429 | 9.0E-22 |
| sp|Q9C0V8|YHJ1_SCHPO | Uncharacterized transporter PB10D8.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPB10D8.01 PE=3 SV=1 | 52 | 509 | 2.0E-21 |
| sp|Q05181|PHT1_PSEPU | Phthalate transporter OS=Pseudomonas putida GN=pht1 PE=3 SV=1 | 53 | 372 | 7.0E-21 |
| sp|O94572|YGDF_SCHPO | Uncharacterized transporter C1773.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1773.15 PE=3 SV=1 | 42 | 503 | 4.0E-20 |
| sp|P53241|VHT1_YEAST | Vitamin H transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VHT1 PE=1 SV=1 | 48 | 280 | 3.0E-19 |
| sp|O74923|YJ7D_SCHPO | Uncharacterized transporter C757.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC757.13 PE=3 SV=1 | 44 | 336 | 5.0E-19 |
| sp|Q9C0U9|YQD3_SCHPO | Uncharacterized transporter PB1C11.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCPB1C11.03 PE=1 SV=1 | 44 | 501 | 4.0E-18 |
| sp|O13880|VHT1_SCHPO | Vitamin H transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vht1 PE=2 SV=1 | 53 | 502 | 4.0E-17 |
| sp|B5BP49|YP55_SCHPO | Uncharacterized transporter C460.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC460.05 PE=3 SV=1 | 21 | 341 | 5.0E-15 |
| sp|Q07904|THI73_YEAST | Thiamine pathway transporter THI73 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THI73 PE=1 SV=1 | 40 | 512 | 9.0E-15 |
| sp|Q12235|YCT1_YEAST | High affinity cysteine transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCT1 PE=1 SV=1 | 39 | 284 | 2.0E-13 |
| sp|P39398|LGOT_ECOLI | Probable L-galactonate transporter OS=Escherichia coli (strain K12) GN=lgoT PE=1 SV=2 | 36 | 240 | 4.0E-13 |
| sp|P37489|YYBO_BACSU | Uncharacterized transporter YybO OS=Bacillus subtilis (strain 168) GN=yybO PE=3 SV=1 | 52 | 358 | 2.0E-11 |
| sp|P0CF20|YO163_YEAST | Putative uncharacterized transporter YOL163W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL163W PE=5 SV=1 | 135 | 296 | 3.0E-11 |
| sp|Q0K843|SAUU_CUPNH | Probable sulfoacetate transporter SauU OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sauU PE=2 SV=1 | 55 | 358 | 9.0E-10 |
| sp|P0AA80|GARP_ECOLI | Probable galactarate transporter OS=Escherichia coli (strain K12) GN=garP PE=1 SV=1 | 56 | 285 | 1.0E-09 |
| sp|P0AA81|GARP_ECO57 | Probable galactarate transporter OS=Escherichia coli O157:H7 GN=garP PE=3 SV=1 | 56 | 285 | 1.0E-09 |
| sp|P42205|GUDP_PSEPU | Probable glucarate transporter OS=Pseudomonas putida GN=gudP PE=3 SV=1 | 68 | 192 | 5.0E-09 |
| sp|Q46916|GUDP_ECOLI | Probable glucarate transporter OS=Escherichia coli (strain K12) GN=gudP PE=1 SV=1 | 49 | 259 | 1.0E-07 |
| sp|P42237|GUDP_BACSU | Probable glucarate transporter OS=Bacillus subtilis (strain 168) GN=gudP PE=3 SV=2 | 57 | 239 | 1.0E-06 |
| sp|Q6NMN6|SPNS1_ARATH | Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1 | 44 | 280 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 55 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 63 | 80 | 17 |
| 2 | 100 | 122 | 22 |
| 3 | 129 | 151 | 22 |
| 4 | 155 | 177 | 22 |
| 5 | 190 | 212 | 22 |
| 6 | 222 | 244 | 22 |
| 7 | 296 | 318 | 22 |
| 8 | 328 | 350 | 22 |
| 9 | 362 | 384 | 22 |
| 10 | 388 | 410 | 22 |
| 11 | 417 | 439 | 22 |
| 12 | 449 | 467 | 18 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8883 MSSDDIARAQGGAFDGPPDGEKHFVQKLEHADLPSSPAQNHEMDPARRASVERRMKRKLDARCAIFVLIYIMNYL DRQTISAARLKGLQDDLKLDNTQYATCLSILYVGYILMQVPSNMVINRIQRPSLYIAGAMTLWGLISTLSGIAQD FASMVVIRFFLGFVEAAFLPGALLLLSKWYTRRELTTRNAILFCGNLISNAFSALVGAGVLSNMQGVLGHAAWRW LFFIEGAATMAIAIGAAFILPDLPHNTRGFSEEERFVAQLRMTEDVGEADTDSAEQGAFAGLMMALRDVKIYVLM LTFTAYVVGLSFNAFFPTLTGTLGFDYVPTLLLSSPPWVFSCIISVLVSWHSDRTQEKFWHIIGPLILGIVGFVI SMSTLNVAARYVALFLQAGSYAGYIVFYSWISSSFPRPPAKRAVAIAMINAFSQLGNVAGSYVWDLKDNGYRKSY GIVLAMFCVAAVGSWVFKTMLGRLNEKLEENERRDGSDQSAEAEFIESSDEALRMRKGFRYLT* |
| Coding | >Hirsu2|8883 ATGTCCAGCGACGACATCGCCCGGGCGCAGGGCGGCGCTTTCGACGGGCCTCCAGACGGCGAGAAGCACTTCGTC CAGAAGCTCGAACACGCCGACCTCCCCTCGTCGCCAGCCCAGAATCACGAGATGGATCCGGCGCGGCGAGCCAGC GTCGAGCGGCGCATGAAGCGCAAGCTCGATGCTCGCTGTGCCATCTTCGTCCTCATCTACATCATGAACTACCTC GACCGCCAGACCATCTCGGCCGCGAGACTCAAGGGCCTGCAGGACGACCTGAAGCTCGACAACACCCAGTACGCG ACGTGTCTCAGCATCCTCTACGTCGGCTACATCCTCATGCAGGTGCCGTCCAACATGGTCATCAACCGCATCCAG CGACCGTCGCTCTACATCGCCGGCGCCATGACGCTCTGGGGCCTCATCAGCACGCTGAGCGGCATTGCACAGGAC TTCGCCTCCATGGTCGTCATCCGCTTCTTCTTGGGCTTCGTCGAGGCAGCCTTCCTGCCCGGAGCCCTGCTGCTT CTCTCCAAATGGTACACGCGCCGTGAGCTGACGACCCGAAACGCCATCCTCTTCTGCGGCAACCTCATCTCCAAC GCCTTCTCCGCCCTTGTTGGCGCCGGGGTGCTCTCCAACATGCAGGGCGTTCTGGGCCATGCCGCGTGGAGATGG CTTTTCTTCATCGAAGGCGCCGCAACCATGGCCATTGCGATTGGGGCCGCCTTTATTCTCCCGGACCTGCCGCAT AACACCCGCGGCTTCTCCGAGGAGGAGAGATTTGTTGCTCAGCTGCGCATGACCGAAGACGTGGGCGAGGCTGAT ACAGACTCCGCCGAGCAAGGCGCCTTTGCCGGCTTGATGATGGCTTTGCGAGACGTCAAGATCTACGTCCTGATG CTCACCTTTACCGCCTATGTCGTTGGCCTCTCCTTCAACGCCTTTTTCCCGACCCTTACCGGCACCCTGGGCTTC GACTACGTTCCCACCTTGCTGCTGAGCTCTCCTCCTTGGGTTTTCTCCTGCATTATATCCGTCCTGGTCTCCTGG CACTCGGACCGGACTCAGGAAAAGTTCTGGCATATCATCGGCCCCCTCATCCTGGGCATTGTGGGTTTTGTCATC AGCATGTCGACACTCAACGTCGCCGCCCGCTACGTAGCCCTCTTTCTGCAGGCAGGCTCCTACGCCGGCTACATC GTCTTCTACTCGTGGATCAGCTCCTCGTTCCCGCGCCCTCCGGCCAAGCGAGCCGTTGCCATTGCCATGATCAAC GCCTTCAGCCAGCTGGGCAATGTGGCCGGGTCCTACGTTTGGGATCTCAAGGACAACGGCTATCGGAAGAGCTAC GGCATTGTGCTCGCCATGTTCTGCGTGGCAGCGGTCGGAAGCTGGGTCTTCAAGACTATGCTGGGCAGGCTGAAC GAGAAGCTGGAAGAAAACGAAAGGCGCGACGGAAGCGATCAGTCTGCTGAGGCCGAGTTCATCGAGAGCAGCGAC GAGGCTCTGCGTATGAGGAAAGGATTCAGGTATTTGACGTAA |
| Transcript | >Hirsu2|8883 ATGTCCAGCGACGACATCGCCCGGGCGCAGGGCGGCGCTTTCGACGGGCCTCCAGACGGCGAGAAGCACTTCGTC CAGAAGCTCGAACACGCCGACCTCCCCTCGTCGCCAGCCCAGAATCACGAGATGGATCCGGCGCGGCGAGCCAGC GTCGAGCGGCGCATGAAGCGCAAGCTCGATGCTCGCTGTGCCATCTTCGTCCTCATCTACATCATGAACTACCTC GACCGCCAGACCATCTCGGCCGCGAGACTCAAGGGCCTGCAGGACGACCTGAAGCTCGACAACACCCAGTACGCG ACGTGTCTCAGCATCCTCTACGTCGGCTACATCCTCATGCAGGTGCCGTCCAACATGGTCATCAACCGCATCCAG CGACCGTCGCTCTACATCGCCGGCGCCATGACGCTCTGGGGCCTCATCAGCACGCTGAGCGGCATTGCACAGGAC TTCGCCTCCATGGTCGTCATCCGCTTCTTCTTGGGCTTCGTCGAGGCAGCCTTCCTGCCCGGAGCCCTGCTGCTT CTCTCCAAATGGTACACGCGCCGTGAGCTGACGACCCGAAACGCCATCCTCTTCTGCGGCAACCTCATCTCCAAC GCCTTCTCCGCCCTTGTTGGCGCCGGGGTGCTCTCCAACATGCAGGGCGTTCTGGGCCATGCCGCGTGGAGATGG CTTTTCTTCATCGAAGGCGCCGCAACCATGGCCATTGCGATTGGGGCCGCCTTTATTCTCCCGGACCTGCCGCAT AACACCCGCGGCTTCTCCGAGGAGGAGAGATTTGTTGCTCAGCTGCGCATGACCGAAGACGTGGGCGAGGCTGAT ACAGACTCCGCCGAGCAAGGCGCCTTTGCCGGCTTGATGATGGCTTTGCGAGACGTCAAGATCTACGTCCTGATG CTCACCTTTACCGCCTATGTCGTTGGCCTCTCCTTCAACGCCTTTTTCCCGACCCTTACCGGCACCCTGGGCTTC GACTACGTTCCCACCTTGCTGCTGAGCTCTCCTCCTTGGGTTTTCTCCTGCATTATATCCGTCCTGGTCTCCTGG CACTCGGACCGGACTCAGGAAAAGTTCTGGCATATCATCGGCCCCCTCATCCTGGGCATTGTGGGTTTTGTCATC AGCATGTCGACACTCAACGTCGCCGCCCGCTACGTAGCCCTCTTTCTGCAGGCAGGCTCCTACGCCGGCTACATC GTCTTCTACTCGTGGATCAGCTCCTCGTTCCCGCGCCCTCCGGCCAAGCGAGCCGTTGCCATTGCCATGATCAAC GCCTTCAGCCAGCTGGGCAATGTGGCCGGGTCCTACGTTTGGGATCTCAAGGACAACGGCTATCGGAAGAGCTAC GGCATTGTGCTCGCCATGTTCTGCGTGGCAGCGGTCGGAAGCTGGGTCTTCAAGACTATGCTGGGCAGGCTGAAC GAGAAGCTGGAAGAAAACGAAAGGCGCGACGGAAGCGATCAGTCTGCTGAGGCCGAGTTCATCGAGAGCAGCGAC GAGGCTCTGCGTATGAGGAAAGGATTCAGGTATTTGACGTAA |
| Gene | >Hirsu2|8883 ATGTCCAGCGACGACATCGCCCGGGCGCAGGGCGGCGCTTTCGACGGGCCTCCAGACGGCGAGAAGCACTTCGTC CAGAAGCTCGAACACGCCGACCTCCCCTCGTCGCCAGCCCAGAATCACGAGATGGATCCGGCGCGGCGAGCCAGC GTCGAGCGGCGCATGAAGCGCAAGCTCGATGCTCGCTGTGCCATCTTCGTCCTCATCTACATCATGAACTACCTC GACCGCCAGACCATCTCGGCCGCGAGACTCAAGGGCCTGCAGGACGACCTGAAGCTCGACAACACCCAGTACGCG ACGTGTCTCAGCATCCTCTACGTCGGCTACATCCTCATGCAGGTGCCGTCCAACATGGTCATCAACCGCATCCAG CGACCGTCGCTCTACATCGCCGGCGCCATGACGCTCTGGGGCCTCATCAGCACGCTGAGCGGCATTGCACAGGAC TTCGCCTCCATGGTCGTCATCCGCTTCTTCTTGGGCTTCGTCGAGGCAGCCTTCCTGCCCGGAGCCCTGCTGCTT CTCTCCAAATGGTACACGCGCCGTGAGCTGACGACCCGAAACGCCATCCTCTTCTGCGGCAACCTCATCTCCAAC GCCTTCTCCGCCCTTGTTGGCGCCGGGGTGCTCTCCAACATGCAGGGCGTTCTGGGCCATGCCGCGTGGAGATGG CTTTTCTTCATCGAAGGCGCCGCAACCATGGCCATTGCGATTGGGGCCGCCTTTATTCTCCCGGACCTGCCGCAT AACACCCGCGGCTTCTCCGAGGAGGAGAGATTTGTTGCTCAGCTGCGCATGACCGAAGACGTGGGCGAGGCTGAT ACAGACTCCGCCGAGCAAGGCGCCTTTGCCGGCTTGATGATGGCTTTGCGAGACGTCAAGATCTACGTCCTGATG CTCACCTTTACCGCCTATGTCGTTGGCCTCTCCTTCAACGCCTTTTTCGTAAGTCGTGCCGCCACGCCGTCCGGT CTCGGCTGGGAACATCTCGAGACGTACGCTGACGCGATTCAAGCCGACCCTTACCGGCACCCTGGGCTTCGACTA CGTTCCCACCTTGCTGCTGAGCTCTCCTCCTTGGGTTTTCTCCTGCATTATATCCGTCCTGGTCTCCTGGCACTC GGACCGGACTCAGGAAAAGGTGAGTTTTGGTTTGACAAATCTTGACGCGCCAACAGTCTAACCACGATTCATTCA GTTCTGGCATATCATCGGCCCCCTCATCCTGGGCATTGTGGGTTTTGTCATCAGCATGTCGACACTCAACGTCGC CGCCCGCTACGTAGCCCTCTTTCTGCAGGCAGGCTCCTACGCCGGCTACATCGTCTTCTACTCGTGGATCAGCTC CTCGTTCCCGCGCCCTCCGGCCAAGCGAGCCGTTGCCATTGCCATGATCAACGCCTTCAGCCAGCTGGGCAATGT GGCCGGGTCCTACGTTTGGGATCTCAAGGACAACGGCTATCGGAAGAGCTACGGCATTGTGCTCGCCATGTTCTG CGTGGCAGCGGTCGGAAGCTGGGTCTTCAAGACTATGCTGGGCAGGCTGAACGAGAAGCTGGAAGAAAACGAAAG GCGCGACGGAAGCGATCAGTCTGCTGAGGCCGAGTTCATCGAGAGCAGCGACGAGGCTCTGCGTATGAGGAAAGG ATTCAGGTATTTGACGTAA |