Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|8860
Gene name
LocationContig_604:8811..10508
Strand+
Gene length (bp)1697
Transcript length (bp)1359
Coding sequence length (bp)1359
Protein length (aa) 453

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08423 Rad51 Rad51 1.1E-11 56 283
PF00154 RecA recA bacterial DNA recombination protein 4.8E-05 59 123

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O14129|RAD55_SCHPO DNA repair protein rhp55 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp55 PE=1 SV=1 79 283 5.0E-09

GO

GO Term Description Terminal node
GO:0003697 single-stranded DNA binding Yes
GO:0005524 ATP binding Yes
GO:0006281 DNA repair Yes
GO:1901265 nucleoside phosphate binding No
GO:0097159 organic cyclic compound binding No
GO:0006950 response to stress No
GO:0006259 DNA metabolic process No
GO:0003676 nucleic acid binding No
GO:0071704 organic substance metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0005488 binding No
GO:0043170 macromolecule metabolic process No
GO:0050896 response to stimulus No
GO:0044238 primary metabolic process No
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0036094 small molecule binding No
GO:0044260 cellular macromolecule metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0008144 drug binding No
GO:0003674 molecular_function No
GO:0003677 DNA binding No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0009987 cellular process No
GO:1901363 heterocyclic compound binding No
GO:0000166 nucleotide binding No
GO:0043167 ion binding No
GO:0043168 anion binding No
GO:0097367 carbohydrate derivative binding No
GO:0051716 cellular response to stimulus No
GO:0090304 nucleic acid metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0032555 purine ribonucleotide binding No
GO:0032559 adenyl ribonucleotide binding No
GO:0006974 cellular response to DNA damage stimulus No
GO:0032553 ribonucleotide binding No
GO:0030554 adenyl nucleotide binding No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0033554 cellular response to stress No
GO:0044237 cellular metabolic process No
GO:0017076 purine nucleotide binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 26 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|8860
MASLAPSPSSPTPSAQTMDYHAVHGHDLSSFDAPGTHRLPTVAASQALDDLEHELALPLSTGLDSLDRALVGADA
GRRGGIERGQVTEIWGPPGTGKTALAIQTAAHAVCDGHDVVWVDCLQTLPRRRIVRVVEAVKAAQDAHVSGHDGA
GIIDWAKFTHFSCLTLPHLMALTSRPAPSLIGQAVSLVVVSCPSALLNEALPRSQDGAASSKAGQGLSAAAKRSQ
GLHFVMDALQKLAATRNCAVLVLTQCATRMQSEVGATLVAAVNASVWEQGVTTRLVLFRDWAWTGTESGSVFVAG
LQKVDGKRTNGVVEGVSAFSVEPGGVASVDYDADAAGSLSGGPADLGRRKRKLGQTELEVPDSEDEGDEGEDDDY
GWAGEDEEALPAPPPQWQGSEDILLGQEVGRGGGGGGGGGDGDGEGSGDEGASDSDGGSRDGATSDEGRLEAGEA
PR*
Coding >Hirsu2|8860
ATGGCCAGCCTCGCGCCGAGCCCATCGTCGCCGACGCCCTCGGCCCAGACCATGGACTACCACGCTGTGCACGGC
CACGACCTCTCGAGCTTTGACGCGCCCGGAACCCACCGCCTCCCGACTGTCGCCGCCTCCCAGGCCCTCGACGAC
CTCGAGCATGAGCTCGCCCTGCCGCTATCGACGGGGCTCGACAGCCTCGACCGCGCCCTCGTCGGGGCCGACGCC
GGCCGACGCGGCGGCATCGAGCGCGGCCAGGTGACGGAGATCTGGGGGCCGCCCGGCACGGGCAAGACGGCTCTG
GCCATCCAAACCGCCGCCCATGCCGTCTGCGATGGCCATGACGTGGTCTGGGTAGACTGCCTGCAGACCCTGCCC
AGACGGCGCATCGTCCGCGTCGTCGAGGCGGTAAAGGCAGCCCAGGACGCGCACGTCTCTGGCCATGATGGCGCC
GGCATCATCGACTGGGCCAAGTTTACGCACTTTTCATGCCTGACCCTGCCTCATCTGATGGCCCTCACCTCGCGG
CCGGCGCCCAGTCTGATAGGGCAAGCAGTCTCCCTCGTCGTCGTCAGCTGCCCGTCGGCCCTGCTGAACGAGGCT
CTGCCCAGGTCGCAGGACGGAGCGGCGAGCTCCAAGGCCGGCCAAGGCCTCAGTGCAGCGGCCAAGCGGTCGCAG
GGACTGCACTTCGTCATGGACGCGCTGCAGAAGCTGGCGGCGACGCGCAACTGCGCCGTCTTGGTGCTGACGCAG
TGCGCCACGAGGATGCAGTCCGAGGTGGGCGCGACGCTGGTCGCGGCCGTCAACGCCTCCGTGTGGGAACAGGGC
GTGACAACCCGGCTCGTGCTGTTCAGGGATTGGGCCTGGACGGGCACGGAATCTGGCAGCGTCTTCGTGGCCGGC
CTGCAGAAGGTGGACGGCAAGAGGACCAATGGGGTGGTCGAGGGCGTGTCGGCCTTCAGCGTCGAGCCCGGTGGT
GTGGCGAGCGTCGACTACGATGCTGACGCCGCCGGCAGTCTCTCGGGCGGTCCCGCCGATCTGGGACGGCGGAAG
AGGAAGCTGGGGCAGACGGAGCTGGAGGTGCCCGACAGCGAAGACGAGGGCGACGAGGGCGAGGACGACGACTAC
GGCTGGGCGGGCGAGGACGAGGAGGCCCTGCCGGCCCCACCGCCCCAGTGGCAGGGCAGCGAAGACATTCTGCTT
GGCCAAGAAGTTGGCCGCGGGGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGACGGCGAGGGCTCCGGCGACGAG
GGCGCCAGCGACAGCGACGGGGGCTCCAGGGACGGGGCCACGAGCGACGAGGGCCGGCTAGAGGCCGGCGAAGCG
CCGAGATGA
Transcript >Hirsu2|8860
ATGGCCAGCCTCGCGCCGAGCCCATCGTCGCCGACGCCCTCGGCCCAGACCATGGACTACCACGCTGTGCACGGC
CACGACCTCTCGAGCTTTGACGCGCCCGGAACCCACCGCCTCCCGACTGTCGCCGCCTCCCAGGCCCTCGACGAC
CTCGAGCATGAGCTCGCCCTGCCGCTATCGACGGGGCTCGACAGCCTCGACCGCGCCCTCGTCGGGGCCGACGCC
GGCCGACGCGGCGGCATCGAGCGCGGCCAGGTGACGGAGATCTGGGGGCCGCCCGGCACGGGCAAGACGGCTCTG
GCCATCCAAACCGCCGCCCATGCCGTCTGCGATGGCCATGACGTGGTCTGGGTAGACTGCCTGCAGACCCTGCCC
AGACGGCGCATCGTCCGCGTCGTCGAGGCGGTAAAGGCAGCCCAGGACGCGCACGTCTCTGGCCATGATGGCGCC
GGCATCATCGACTGGGCCAAGTTTACGCACTTTTCATGCCTGACCCTGCCTCATCTGATGGCCCTCACCTCGCGG
CCGGCGCCCAGTCTGATAGGGCAAGCAGTCTCCCTCGTCGTCGTCAGCTGCCCGTCGGCCCTGCTGAACGAGGCT
CTGCCCAGGTCGCAGGACGGAGCGGCGAGCTCCAAGGCCGGCCAAGGCCTCAGTGCAGCGGCCAAGCGGTCGCAG
GGACTGCACTTCGTCATGGACGCGCTGCAGAAGCTGGCGGCGACGCGCAACTGCGCCGTCTTGGTGCTGACGCAG
TGCGCCACGAGGATGCAGTCCGAGGTGGGCGCGACGCTGGTCGCGGCCGTCAACGCCTCCGTGTGGGAACAGGGC
GTGACAACCCGGCTCGTGCTGTTCAGGGATTGGGCCTGGACGGGCACGGAATCTGGCAGCGTCTTCGTGGCCGGC
CTGCAGAAGGTGGACGGCAAGAGGACCAATGGGGTGGTCGAGGGCGTGTCGGCCTTCAGCGTCGAGCCCGGTGGT
GTGGCGAGCGTCGACTACGATGCTGACGCCGCCGGCAGTCTCTCGGGCGGTCCCGCCGATCTGGGACGGCGGAAG
AGGAAGCTGGGGCAGACGGAGCTGGAGGTGCCCGACAGCGAAGACGAGGGCGACGAGGGCGAGGACGACGACTAC
GGCTGGGCGGGCGAGGACGAGGAGGCCCTGCCGGCCCCACCGCCCCAGTGGCAGGGCAGCGAAGACATTCTGCTT
GGCCAAGAAGTTGGCCGCGGGGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGACGGCGAGGGCTCCGGCGACGAG
GGCGCCAGCGACAGCGACGGGGGCTCCAGGGACGGGGCCACGAGCGACGAGGGCCGGCTAGAGGCCGGCGAAGCG
CCGAGATGA
Gene >Hirsu2|8860
ATGGCCAGCCTCGCGCCGAGCCCATCGTCGCCGACGCCCTCGGCCCAGACCATGGACTACCACGCTGTGCACGGC
CACGACCTCTCGAGCTTTGACGCGCCCGGAACCCGTAAGCCGAGCCCTCCCTGTCCCCCCTCGTCTTCCCCGTGG
GTGCTGAAGCCAGAGGGCAGACCGCCTCCCGACTGTCGCCGCCTCCCAGGCCCTCGACGACCTCGAGCATGAGCT
CGCCCTGCCGCTATCGACGGGGCTCGACAGCCTCGACCGCGCCCTCGTCGGGGCCGACGCCGGCCGACGCGGCGG
CATCGAGCGCGGCCAGGTGACGGAGATCTGGGGGCCGCCCGGCACGGGCAAGACGGCTCTGGCGTACAACGACCT
CTTTTTTTTTTCGACTGTTTCCTCCGCCCGCTGACACGTGGCTTGCAGCATCCAAACCGCCGCCCATGCCGTCTG
CGATGGCCATGACGTGGTCTGGGTAGGTCTGTCCTTTTTCCCCTTCTCCCGCTTCGGCTCCCGGCGCACAGGTTC
CAGTCGAGCTAAGTGCAAGCCGGGCATGCAGACTGCCTGCAGACCCTGCCCAGACGGCGCATCGTCCGCGTCGTC
GAGGCGGTAAAGGCAGCCCAGGACGCGCACGTCTCTGGCCATGATGGCGCCGGCATCATCGACTGGGCCAAGTTT
ACGCACTTTTCATGCCTGACCCTGCCTCATCTGATGGCCCTCACCTCGCGGCCGGCGCCCAGTCTGATAGGGCAA
GCAGTCTCCCTCGTCGTCGTCAGCTGCCCGTCGGCCCTGCTGAACGAGGCTCTGCCCAGGTCGCAGGACGGAGCG
GCGAGCTCCAAGGCCGGCCAAGGTACTCTCGGTCCCCTGTCCCCTACACTAGATACGTCGCAGCTCACGCTCATG
CCGCTTCAGGCCTCAGTGCAGCGGCCAAGCGGTCGCAGGGACTGCACTTCGTCATGGACGCGCTGCAGAAGCTGG
CGGCGACGCGCAACTGCGCCGTCTTGGTGCTGACGCAGTGCGCCACGAGGATGCAGTCCGAGGTGGGCGCGACGC
TGGTCGCGGCCGTCAACGCCTCCGTGTGGGAACAGGGCGTGACAACCCGGCTCGTGCTGTTCAGGGATTGGGCCT
GGACGGGCACGGAATCTGGCAGCGTCTTCGTGGCCGGCCTGCAGAAGGTGGACGGCAAGAGGACCAATGGGGTGG
TCGAGGGCGTGTCGGCCTTCAGCGTCGAGCCCGTACGTCGCACGCCCCCCGGTCCCCCCCCGGCCCAGCCAATCG
TCGATTTGCTAACGTTGCGCGCGGGGCCGCAGGGTGGTGTGGCGAGCGTCGACTACGATGCTGACGCCGCCGGCA
GTCTCTCGGGCGGTCCCGCCGATCTGGGACGGCGGAAGAGGAAGCTGGGGCAGACGGAGCTGGAGGTGCCCGACA
GCGAAGACGAGGGCGACGAGGGCGAGGACGACGACTACGGCTGGGCGGGCGAGGACGAGGAGGCCCTGCCGGCCC
CACCGCCCCAGTGGCAGGGCAGCGAAGACATTCTGCTTGGCCAAGAAGTTGGCCGCGGGGGCGGCGGCGGCGGCG
GCGGCGGCGACGGCGACGGCGAGGGCTCCGGCGACGAGGGCGCCAGCGACAGCGACGGGGGCTCCAGGGACGGGG
CCACGAGCGACGAGGGCCGGCTAGAGGCCGGCGAAGCGCCGAGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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