© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8836 |
| Gene name | |
| Location | Contig_600:14438..15584 |
| Strand | + |
| Gene length (bp) | 1146 |
| Transcript length (bp) | 963 |
| Coding sequence length (bp) | 963 |
| Protein length (aa) | 321 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05368 | NmrA | NmrA-like family | 6.2E-09 | 36 | 151 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.6479 | 0.3771 | 0.2477 | 0.0361 | 0.2867 | 0.0332 | 0.0327 | 0.1144 | 0.1242 | 0.0872 |
| Orthofinder run ID | 4 |
| Orthogroup | 5707 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8836 MMRIVVAGGGGLGCLLATQLSQAANAYSVVVLSRFARNEFNQLDVQLQVVDYNDLGRLAFALQGVDLVISTISGR EQINLIHASVRGRVRVFVPSEFEGSLSRRPTHNDPLDRGSSQAIDLLQQYARQGRIKYTVFSCGIFMERFLPYGL GHLNIGHGSGIVHPGEYLVDIVRATAEFVDRDSKGRTVRICMSSVYDVVRFLVAAIDLGPERWPTEFTMRGDRMS LSELVETCSQFRNVVFRRQTLSHAEVQALLNYHIQMGQTDRVAYYQRLLATANGRYDFSRATLNEAIERSDLVDV RAMTLVQWLMTMWQPMWQPM* |
| Coding | >Hirsu2|8836 ATGATGCGAATCGTCGTCGCGGGCGGAGGTGGCCTCGGGTGCCTGCTGGCGACACAGCTATCGCAGGCGGCAAAC GCCTACAGCGTCGTCGTGCTCTCGAGATTTGCTCGAAATGAATTCAACCAGCTCGACGTGCAGCTCCAGGTGGTC GACTACAACGACCTCGGTCGCCTGGCGTTTGCGCTGCAGGGCGTCGATCTCGTCATCTCGACGATATCGGGCCGG GAGCAGATCAACCTCATCCACGCCTCGGTGCGTGGGCGCGTGCGAGTCTTCGTGCCGTCCGAGTTCGAGGGCAGT CTGAGCCGGCGGCCGACACACAACGACCCCCTGGACCGCGGGTCCTCCCAGGCGATCGACCTGCTGCAGCAGTAC GCGCGGCAGGGCCGCATCAAATACACTGTCTTTTCTTGCGGCATCTTCATGGAGAGATTCCTCCCGTACGGGCTT GGCCACCTCAACATCGGCCACGGGTCCGGCATCGTCCACCCAGGCGAATACCTCGTCGACATCGTGCGCGCGACG GCCGAGTTTGTCGACCGAGATTCAAAAGGGCGCACGGTGCGCATCTGTATGTCGTCCGTCTACGACGTTGTCCGA TTCCTCGTCGCGGCCATCGACCTGGGCCCTGAGAGGTGGCCGACCGAGTTCACGATGCGCGGAGACAGGATGTCC CTCTCGGAGCTGGTGGAAACGTGTAGTCAATTCCGCAACGTGGTCTTTCGGCGGCAGACGCTGTCGCACGCAGAA GTCCAGGCCCTCCTGAACTACCACATACAGATGGGCCAAACGGACCGGGTCGCCTACTATCAGCGGTTGCTGGCA ACTGCAAACGGGCGATATGACTTCAGTCGTGCGACGCTGAACGAGGCCATAGAGCGGAGCGATCTCGTGGACGTG CGGGCGATGACTCTGGTCCAGTGGCTGATGACGATGTGGCAGCCGATGTGGCAGCCGATGTGA |
| Transcript | >Hirsu2|8836 ATGATGCGAATCGTCGTCGCGGGCGGAGGTGGCCTCGGGTGCCTGCTGGCGACACAGCTATCGCAGGCGGCAAAC GCCTACAGCGTCGTCGTGCTCTCGAGATTTGCTCGAAATGAATTCAACCAGCTCGACGTGCAGCTCCAGGTGGTC GACTACAACGACCTCGGTCGCCTGGCGTTTGCGCTGCAGGGCGTCGATCTCGTCATCTCGACGATATCGGGCCGG GAGCAGATCAACCTCATCCACGCCTCGGTGCGTGGGCGCGTGCGAGTCTTCGTGCCGTCCGAGTTCGAGGGCAGT CTGAGCCGGCGGCCGACACACAACGACCCCCTGGACCGCGGGTCCTCCCAGGCGATCGACCTGCTGCAGCAGTAC GCGCGGCAGGGCCGCATCAAATACACTGTCTTTTCTTGCGGCATCTTCATGGAGAGATTCCTCCCGTACGGGCTT GGCCACCTCAACATCGGCCACGGGTCCGGCATCGTCCACCCAGGCGAATACCTCGTCGACATCGTGCGCGCGACG GCCGAGTTTGTCGACCGAGATTCAAAAGGGCGCACGGTGCGCATCTGTATGTCGTCCGTCTACGACGTTGTCCGA TTCCTCGTCGCGGCCATCGACCTGGGCCCTGAGAGGTGGCCGACCGAGTTCACGATGCGCGGAGACAGGATGTCC CTCTCGGAGCTGGTGGAAACGTGTAGTCAATTCCGCAACGTGGTCTTTCGGCGGCAGACGCTGTCGCACGCAGAA GTCCAGGCCCTCCTGAACTACCACATACAGATGGGCCAAACGGACCGGGTCGCCTACTATCAGCGGTTGCTGGCA ACTGCAAACGGGCGATATGACTTCAGTCGTGCGACGCTGAACGAGGCCATAGAGCGGAGCGATCTCGTGGACGTG CGGGCGATGACTCTGGTCCAGTGGCTGATGACGATGTGGCAGCCGATGTGGCAGCCGATGTGA |
| Gene | >Hirsu2|8836 ATGATGCGAATCGTCGTCGCGGGCGGAGGTGGCCTCGGGTGCCTGCTGGCGACACAGCTATCGCAGGCGGCAAAC GCCTACAGCGTCGTCGTGCTCTCGAGATTTGTCAGGTCTCTCCGCGAGCTTCATCGACGTACGGCGGCCGTCGAC GTGTTAACTCGTGCTCGCAGGCTCGAAATGAATTCAACCAGCTCGACGTGCAGCTCCAGGTGGTCGACTACAACG ACCTCGGTCGCCTGGCGTTTGCGCTGCAGGGCGTCGATCTCGTCATCTCGACGATATCGGGCCGGGAGCAGATCA ACCTCATCCACGCCTCGGTGCGTGGGCGCGTGCGAGTCTTCGTGCCGTCCGAGTTCGAGGGCAGTCTGAGCCGGC GGCCGACACACAACGACCCCCTGGACCGCGGGTCCTCCCAGGCGATCGACCTGCTGCAGCAGTACGCGCGGCAGG GCCGCATCAAATACACTGTCTTTTCTTGCGGCATCTTCATGGAGAGATTCCTCCCGTACGGGCTTGGCCACCTCA ACATCGGCCACGGGTCCGGCATCGTCCACCCAGGCGAATACCTCGTCGACATCGTGCGCGCGACGGCCGAGTTTG TCGACCGAGATTCAAAAGGGCGCACGGTGCGCATCTGTATGTCGTCCGTCTACGACGTTGTCCGATTCCTCGTCG CGGCCATCGACCTGGGCCCTGAGAGGTGGCCGACCGAGTTCACGATGCGCGGAGACAGGATGTCCCTCTCGGAGC TGGTGGAAACGTGTAGTCAATTCCGCAACGGTGCGAAGGCCCTCTCCTCGTCCCTCCCTATTCCGCCGTGCCTCG CTCCATGCTCCGCTCGACGGTCCGAGTGCGCGCAACGCATGAAGAGCTGCCGGACAGCTAACAGCCTCGTCAGTG GTCTTTCGGCGGCAGACGCTGTCGCACGCAGAAGTCCAGGCCCTCCTGAACTACCACATACAGATGGGCCAAACG GACCGGGTCGCCTACTATCAGCGGTTGCTGGCAACTGCAAACGGGCGATATGACTTCAGTCGTGCGACGCTGAAC GAGGCCATAGAGCGGAGCGATCTCGTGGACGTGCGGGCGATGACTCTGGTCCAGTGGCTGATGACGATGTGGCAG CCGATGTGGCAGCCGATGTGA |