© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8822 |
| Gene name | |
| Location | Contig_60:29653..31057 |
| Strand | + |
| Gene length (bp) | 1404 |
| Transcript length (bp) | 1404 |
| Coding sequence length (bp) | 1404 |
| Protein length (aa) | 468 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1179 | 0.0875 | 0.9498 | 0.1242 | 0.0369 | 0.0189 | 0.2358 | 0.0875 | 0.2639 | 0.0042 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 28 | 0.999623 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 32 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 842 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8822 MARIPWAIKANVLFCAVLWFLTTSGVFATPIVRHRESPPRVLSDTHNRHGSIVKRALVKYNDFKDKRLYVALYLR SAEKPLGHEKYHWALLAAPNNARPDEKVWQAFDAANPDARKANDWELQVKPKVDPKKARSLITRIEVSALRDTIS DVDLQNTLREVPLPDSCKNPFDSCVTWALGGLKKLQDKGYIKKFDVDNFSQVAFDFANGQIDKLSQIDLDEGEAL LKQISHYDPQKGKIVPLGPKDKGPSRPNSGDDIPPDDPGSDEAEDKLRSQRARKNLREKTKSRPKKPEDSEGPPD DEGSNNDGTGSDDAGDEARVQRARNRLREKARNKPQEHNDGENPPDDEGSGNDGPGPDNDDDNDQASPQRARNRL RQKTKNKPKEQLDKQHDNDEPPKDLGPSDRNGDAERSDSASAQHARSWLRKKLYKPKTKPGRESHQSGDVPDKHR QKRPKTKSKGGKGGGRG* |
| Coding | >Hirsu2|8822 ATGGCCCGAATCCCGTGGGCCATCAAGGCCAACGTGCTATTTTGCGCCGTTCTATGGTTCCTGACAACATCTGGC GTTTTTGCTACGCCTATTGTCCGCCACCGAGAATCCCCGCCTCGTGTCCTCAGCGATACGCACAATAGACATGGC AGCATCGTGAAGCGCGCGCTCGTCAAGTACAACGACTTCAAGGACAAGAGGCTATACGTCGCTCTCTACCTCCGC TCGGCCGAAAAGCCATTAGGCCATGAGAAGTATCATTGGGCCCTCTTGGCTGCGCCGAACAATGCCAGACCGGAC GAAAAGGTTTGGCAAGCCTTTGATGCCGCGAACCCGGATGCAAGGAAAGCCAACGACTGGGAGCTTCAAGTGAAA CCGAAGGTAGACCCCAAGAAAGCGAGGTCGCTCATCACTCGGATCGAGGTCAGCGCGCTGCGCGACACCATCTCA GACGTCGACCTCCAAAACACATTGCGTGAGGTGCCGTTACCGGATTCATGCAAGAACCCGTTCGATAGTTGTGTT ACGTGGGCCCTGGGCGGGCTGAAGAAGCTACAAGACAAGGGCTACATCAAGAAATTTGACGTCGACAATTTCAGC CAGGTTGCTTTCGACTTCGCCAACGGGCAAATTGACAAATTAAGCCAAATCGACCTCGACGAAGGGGAAGCTCTC CTGAAGCAAATCTCGCACTACGACCCCCAGAAAGGGAAGATCGTGCCGTTGGGCCCCAAGGACAAAGGGCCATCT CGTCCCAATAGCGGCGACGACATCCCCCCCGACGACCCAGGTTCCGACGAGGCCGAGGACAAGCTCAGAAGCCAG CGGGCGCGGAAGAATCTGCGAGAAAAAACCAAGTCCAGACCCAAGAAGCCAGAAGATAGCGAGGGCCCTCCGGAC GATGAAGGGTCTAACAACGACGGTACAGGATCCGACGACGCCGGCGACGAGGCGAGAGTGCAACGCGCTCGGAAT CGTCTGCGCGAGAAAGCCAGGAACAAGCCCCAGGAGCATAATGATGGCGAGAATCCCCCGGATGATGAAGGATCC GGCAATGACGGGCCAGGACCTGACAATGACGATGACAACGACCAGGCGAGTCCGCAGCGGGCTCGGAACCGTCTA CGCCAGAAAACCAAGAACAAGCCCAAGGAGCAGCTAGACAAGCAGCACGACAACGACGAGCCTCCCAAGGACCTT GGGCCCTCGGACAGAAACGGCGACGCAGAACGCAGCGATAGCGCAAGCGCCCAGCACGCGAGAAGCTGGTTGCGA AAGAAGCTATACAAGCCCAAGACGAAGCCGGGCCGCGAAAGCCACCAGAGCGGCGACGTCCCCGACAAGCATCGC CAGAAACGCCCCAAGACAAAGTCCAAGGGCGGGAAGGGCGGTGGCAGGGGCTGA |
| Transcript | >Hirsu2|8822 ATGGCCCGAATCCCGTGGGCCATCAAGGCCAACGTGCTATTTTGCGCCGTTCTATGGTTCCTGACAACATCTGGC GTTTTTGCTACGCCTATTGTCCGCCACCGAGAATCCCCGCCTCGTGTCCTCAGCGATACGCACAATAGACATGGC AGCATCGTGAAGCGCGCGCTCGTCAAGTACAACGACTTCAAGGACAAGAGGCTATACGTCGCTCTCTACCTCCGC TCGGCCGAAAAGCCATTAGGCCATGAGAAGTATCATTGGGCCCTCTTGGCTGCGCCGAACAATGCCAGACCGGAC GAAAAGGTTTGGCAAGCCTTTGATGCCGCGAACCCGGATGCAAGGAAAGCCAACGACTGGGAGCTTCAAGTGAAA CCGAAGGTAGACCCCAAGAAAGCGAGGTCGCTCATCACTCGGATCGAGGTCAGCGCGCTGCGCGACACCATCTCA GACGTCGACCTCCAAAACACATTGCGTGAGGTGCCGTTACCGGATTCATGCAAGAACCCGTTCGATAGTTGTGTT ACGTGGGCCCTGGGCGGGCTGAAGAAGCTACAAGACAAGGGCTACATCAAGAAATTTGACGTCGACAATTTCAGC CAGGTTGCTTTCGACTTCGCCAACGGGCAAATTGACAAATTAAGCCAAATCGACCTCGACGAAGGGGAAGCTCTC CTGAAGCAAATCTCGCACTACGACCCCCAGAAAGGGAAGATCGTGCCGTTGGGCCCCAAGGACAAAGGGCCATCT CGTCCCAATAGCGGCGACGACATCCCCCCCGACGACCCAGGTTCCGACGAGGCCGAGGACAAGCTCAGAAGCCAG CGGGCGCGGAAGAATCTGCGAGAAAAAACCAAGTCCAGACCCAAGAAGCCAGAAGATAGCGAGGGCCCTCCGGAC GATGAAGGGTCTAACAACGACGGTACAGGATCCGACGACGCCGGCGACGAGGCGAGAGTGCAACGCGCTCGGAAT CGTCTGCGCGAGAAAGCCAGGAACAAGCCCCAGGAGCATAATGATGGCGAGAATCCCCCGGATGATGAAGGATCC GGCAATGACGGGCCAGGACCTGACAATGACGATGACAACGACCAGGCGAGTCCGCAGCGGGCTCGGAACCGTCTA CGCCAGAAAACCAAGAACAAGCCCAAGGAGCAGCTAGACAAGCAGCACGACAACGACGAGCCTCCCAAGGACCTT GGGCCCTCGGACAGAAACGGCGACGCAGAACGCAGCGATAGCGCAAGCGCCCAGCACGCGAGAAGCTGGTTGCGA AAGAAGCTATACAAGCCCAAGACGAAGCCGGGCCGCGAAAGCCACCAGAGCGGCGACGTCCCCGACAAGCATCGC CAGAAACGCCCCAAGACAAAGTCCAAGGGCGGGAAGGGCGGTGGCAGGGGCTGA |
| Gene | >Hirsu2|8822 ATGGCCCGAATCCCGTGGGCCATCAAGGCCAACGTGCTATTTTGCGCCGTTCTATGGTTCCTGACAACATCTGGC GTTTTTGCTACGCCTATTGTCCGCCACCGAGAATCCCCGCCTCGTGTCCTCAGCGATACGCACAATAGACATGGC AGCATCGTGAAGCGCGCGCTCGTCAAGTACAACGACTTCAAGGACAAGAGGCTATACGTCGCTCTCTACCTCCGC TCGGCCGAAAAGCCATTAGGCCATGAGAAGTATCATTGGGCCCTCTTGGCTGCGCCGAACAATGCCAGACCGGAC GAAAAGGTTTGGCAAGCCTTTGATGCCGCGAACCCGGATGCAAGGAAAGCCAACGACTGGGAGCTTCAAGTGAAA CCGAAGGTAGACCCCAAGAAAGCGAGGTCGCTCATCACTCGGATCGAGGTCAGCGCGCTGCGCGACACCATCTCA GACGTCGACCTCCAAAACACATTGCGTGAGGTGCCGTTACCGGATTCATGCAAGAACCCGTTCGATAGTTGTGTT ACGTGGGCCCTGGGCGGGCTGAAGAAGCTACAAGACAAGGGCTACATCAAGAAATTTGACGTCGACAATTTCAGC CAGGTTGCTTTCGACTTCGCCAACGGGCAAATTGACAAATTAAGCCAAATCGACCTCGACGAAGGGGAAGCTCTC CTGAAGCAAATCTCGCACTACGACCCCCAGAAAGGGAAGATCGTGCCGTTGGGCCCCAAGGACAAAGGGCCATCT CGTCCCAATAGCGGCGACGACATCCCCCCCGACGACCCAGGTTCCGACGAGGCCGAGGACAAGCTCAGAAGCCAG CGGGCGCGGAAGAATCTGCGAGAAAAAACCAAGTCCAGACCCAAGAAGCCAGAAGATAGCGAGGGCCCTCCGGAC GATGAAGGGTCTAACAACGACGGTACAGGATCCGACGACGCCGGCGACGAGGCGAGAGTGCAACGCGCTCGGAAT CGTCTGCGCGAGAAAGCCAGGAACAAGCCCCAGGAGCATAATGATGGCGAGAATCCCCCGGATGATGAAGGATCC GGCAATGACGGGCCAGGACCTGACAATGACGATGACAACGACCAGGCGAGTCCGCAGCGGGCTCGGAACCGTCTA CGCCAGAAAACCAAGAACAAGCCCAAGGAGCAGCTAGACAAGCAGCACGACAACGACGAGCCTCCCAAGGACCTT GGGCCCTCGGACAGAAACGGCGACGCAGAACGCAGCGATAGCGCAAGCGCCCAGCACGCGAGAAGCTGGTTGCGA AAGAAGCTATACAAGCCCAAGACGAAGCCGGGCCGCGAAAGCCACCAGAGCGGCGACGTCCCCGACAAGCATCGC CAGAAACGCCCCAAGACAAAGTCCAAGGGCGGGAAGGGCGGTGGCAGGGGCTGA |