© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|882 |
| Gene name | |
| Location | Contig_1185:21..411 |
| Strand | + |
| Gene length (bp) | 390 |
| Transcript length (bp) | 333 |
| Coding sequence length (bp) | 333 |
| Protein length (aa) | 111 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05686 | Glyco_transf_90 | Glycosyl transferase family 90 | 1.0E-11 | 4 | 87 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5K8R6|CXT1_CRYNJ | Beta-1,2-xylosyltransferase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CXT1 PE=1 SV=1 | 1 | 91 | 6.0E-13 |
| sp|Q6UW63|KDEL1_HUMAN | KDEL motif-containing protein 1 OS=Homo sapiens GN=KDELC1 PE=1 SV=1 | 5 | 86 | 1.0E-07 |
| sp|Q29AU6|RUMI_DROPS | O-glucosyltransferase rumi OS=Drosophila pseudoobscura pseudoobscura GN=rumi PE=3 SV=1 | 1 | 87 | 2.0E-07 |
| sp|Q9JHP7|KDEL1_MOUSE | KDEL motif-containing protein 1 OS=Mus musculus GN=Kdelc1 PE=1 SV=1 | 5 | 86 | 2.0E-06 |
| sp|Q566E5|KDEL2_RAT | KDEL motif-containing protein 2 OS=Rattus norvegicus GN=Kdelc2 PE=2 SV=1 | 1 | 84 | 3.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|882 MRSRSLALKQTLFREWHLDRLRPWVHYVPLSQEADELVEAVRFLDGDGRAEAERMAAQGRDWAARALRREDMEAW FFRLLLEYARVVDDRRASLGFDMDAAETEHGPEQQ* |
| Coding | >Hirsu2|882 ATGCGCAGCCGCAGCCTGGCGCTCAAGCAGACGCTGTTCCGCGAGTGGCACCTGGACCGGCTGCGGCCGTGGGTC CACTACGTGCCGCTGAGCCAGGAGGCCGACGAGCTGGTCGAGGCCGTGCGCTTCCTCGACGGCGACGGCCGCGCC GAGGCCGAGCGCATGGCCGCCCAGGGCCGCGACTGGGCCGCCCGCGCGCTGCGCCGCGAGGACATGGAGGCCTGG TTCTTCCGCCTGCTTCTCGAGTACGCGCGCGTCGTCGACGATCGGAGGGCGAGCCTCGGCTTCGACATGGACGCG GCCGAGACCGAGCACGGGCCCGAACAGCAGTGA |
| Transcript | >Hirsu2|882 ATGCGCAGCCGCAGCCTGGCGCTCAAGCAGACGCTGTTCCGCGAGTGGCACCTGGACCGGCTGCGGCCGTGGGTC CACTACGTGCCGCTGAGCCAGGAGGCCGACGAGCTGGTCGAGGCCGTGCGCTTCCTCGACGGCGACGGCCGCGCC GAGGCCGAGCGCATGGCCGCCCAGGGCCGCGACTGGGCCGCCCGCGCGCTGCGCCGCGAGGACATGGAGGCCTGG TTCTTCCGCCTGCTTCTCGAGTACGCGCGCGTCGTCGACGATCGGAGGGCGAGCCTCGGCTTCGACATGGACGCG GCCGAGACCGAGCACGGGCCCGAACAGCAGTGA |
| Gene | >Hirsu2|882 ATGCGCAGCCGCAGCCTGGCGCTCAAGCAGACGCTGTTCCGCGAGTGGCACCTGGACCGGCTGCGGCCGTGGGTC CACTACGTGCCGCTGAGCCAGGAGGCCGACGAGCTGGTCGAGGCCGTGCGCTTCCTCGACGGCGACGGCCGCGCC GAGGCCGAGCGCATGGCCGCCCAGGGCCGCGACTGGGCCGCCCGCGCGCTGCGCCGCGAGGACATGGAGGCCTGG TTCTTCCGCCTGCTTCTCGAGTGAGTCCCCGGCTCCTTTTTGACCCCGCGCCGTCCCGGCCGTTGACCGGCCGAC AGGTACGCGCGCGTCGTCGACGATCGGAGGGCGAGCCTCGGCTTCGACATGGACGCGGCCGAGACCGAGCACGGG CCCGAACAGCAGTGA |