© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|8747 |
| Gene name | |
| Location | Contig_591:5434..7143 |
| Strand | - |
| Gene length (bp) | 1709 |
| Transcript length (bp) | 1575 |
| Coding sequence length (bp) | 1575 |
| Protein length (aa) | 525 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01169 | UPF0016 | Uncharacterized protein family UPF0016 | 5.0E-20 | 263 | 336 |
| PF01169 | UPF0016 | Uncharacterized protein family UPF0016 | 1.2E-19 | 441 | 514 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38301|GDT1_YEAST | GCR1-dependent translation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDT1 PE=1 SV=1 | 260 | 522 | 3.0E-60 |
| sp|Q9HC07|TM165_HUMAN | Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1 | 259 | 515 | 3.0E-52 |
| sp|Q10320|YD68_SCHPO | GDT1-like protein C17G8.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.08c PE=3 SV=1 | 260 | 522 | 3.0E-51 |
| sp|Q4V899|TM165_RAT | Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1 | 211 | 515 | 2.0E-49 |
| sp|P52875|TM165_MOUSE | Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=1 SV=2 | 211 | 515 | 2.0E-49 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38301|GDT1_YEAST | GCR1-dependent translation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDT1 PE=1 SV=1 | 260 | 522 | 3.0E-60 |
| sp|Q9HC07|TM165_HUMAN | Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1 | 259 | 515 | 3.0E-52 |
| sp|Q10320|YD68_SCHPO | GDT1-like protein C17G8.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.08c PE=3 SV=1 | 260 | 522 | 3.0E-51 |
| sp|Q4V899|TM165_RAT | Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1 | 211 | 515 | 2.0E-49 |
| sp|P52875|TM165_MOUSE | Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=1 SV=2 | 211 | 515 | 2.0E-49 |
| sp|Q9P7Q0|YLY5_SCHPO | GDT1-like protein C186.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC186.05c PE=3 SV=1 | 263 | 522 | 1.0E-38 |
| sp|Q2R4J1|GDT13_ORYSJ | GDT1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0472500 PE=2 SV=1 | 258 | 514 | 9.0E-37 |
| sp|A2ZE50|GDT13_ORYSI | GDT1-like protein 3 OS=Oryza sativa subsp. indica GN=OsI_36063 PE=3 SV=1 | 258 | 514 | 9.0E-37 |
| sp|B9G125|GDT15_ORYSJ | GDT1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os08g0433100 PE=2 SV=1 | 261 | 519 | 4.0E-32 |
| sp|Q9C6M1|GDT14_ARATH | GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1 | 259 | 524 | 1.0E-31 |
| sp|Q6ZIB9|GDT14_ORYSJ | GDT1-like protein 4 OS=Oryza sativa subsp. japonica GN=Os08g0528500 PE=2 SV=1 | 227 | 514 | 3.0E-31 |
| sp|A2YXC7|GDT14_ORYSI | GDT1-like protein 4 OS=Oryza sativa subsp. indica GN=OsI_29993 PE=3 SV=1 | 227 | 514 | 3.0E-31 |
| sp|Q9SX28|GDT15_ARATH | GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=1 SV=1 | 259 | 513 | 8.0E-30 |
| sp|Q9T0H9|GDT12_ARATH | GDT1-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=At4g13590 PE=1 SV=2 | 261 | 514 | 1.0E-23 |
| sp|P52876|Y615_SYNY3 | GDT1-like protein sll0615 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0615 PE=3 SV=1 | 440 | 516 | 4.0E-19 |
| sp|Q93Y38|GDT13_ARATH | GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1 | 430 | 514 | 4.0E-17 |
| sp|Q93Y38|GDT13_ARATH | GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1 | 248 | 340 | 2.0E-15 |
| sp|Q5NAY7|GDT11_ORYSJ | GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0221700 PE=3 SV=2 | 230 | 524 | 2.0E-15 |
| sp|B8AAM2|GDT11_ORYSI | GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_00941 PE=3 SV=2 | 230 | 524 | 5.0E-15 |
| sp|Q94AX5|GDT11_ARATH | GDT1-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64150 PE=2 SV=2 | 261 | 514 | 1.0E-14 |
| sp|P52876|Y615_SYNY3 | GDT1-like protein sll0615 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0615 PE=3 SV=1 | 260 | 376 | 9.0E-14 |
| sp|Q2R2Z4|GDT12_ORYSJ | GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0544500 PE=2 SV=1 | 441 | 518 | 2.0E-12 |
| sp|Q2R2Z4|GDT12_ORYSJ | GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0544500 PE=2 SV=1 | 261 | 368 | 2.0E-09 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1217 | 0.0736 | 0.271 | 0.3271 | 0.3862 | 0.0377 | 0.5258 | 0.5012 | 0.4331 | 0.0619 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.852844 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 291 | 313 | 22 |
| 2 | 323 | 340 | 17 |
| 3 | 426 | 448 | 22 |
| 4 | 468 | 490 | 22 |
| 5 | 497 | 519 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4280 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8747 MKLRARRSALPLLLLLPSLAATVAPDKVDDAVASASGNVKARHDRPTEAAPVDGKDGKPHSGPFVETKRSAADSN RPGLPRLKDRPEDPTVVDGKKIPEWNDSVMFDKNRERPQEGTTGTEGGVTEKAKARKAMEGETGEKVLTQPKSPK EQPPLPHSEEQKLQTDDGKDKDGKVKSKQLSEKDKIRLKAWSDKDEDNTDYTGLDKPGDLPEAPHDKTNPLPKSA VKDHLQTSKSAPGSSQTGSKDGLDNDDGIIRPFHSFVLSLTMILVSEVGDKTFLVAALMAMKHDRLVVFSAAFGA LLVMTVLSAVLGHAVPTLIPKRLTSFLAAGLFLVFGIKLLREGMKMDPEEGVSAEMHEVEQELAEKEKEQGHLGR GSISAQSLEMGLKGRASRSKGRFPSPARSPSRSPSRSPSRGSRSADNFIHGISNLCSLLLSPAWVQTFAMTFLGE WGDRSQIATIAMAAGQDYWWVTLGAMCGHAVCTGVAVVGGRAIAGRVSLKVVTVGGAIAFLLFAFIYFVEALHA* |
| Coding | >Hirsu2|8747 ATGAAGCTTCGCGCTCGGCGCTCAGCTCTCCCGCTGCTGCTCCTTCTGCCTTCGCTCGCCGCCACTGTCGCACCT GACAAGGTCGACGACGCCGTTGCCAGCGCTTCTGGGAACGTCAAAGCCCGGCATGACCGGCCCACCGAGGCCGCA CCCGTGGATGGAAAGGACGGCAAGCCTCACAGTGGCCCCTTCGTCGAGACCAAGCGCAGCGCGGCCGACTCGAAC CGCCCGGGGCTGCCTCGCCTCAAAGACCGGCCCGAGGACCCAACTGTGGTGGACGGCAAGAAGATACCGGAATGG AACGACAGCGTCATGTTCGACAAGAACCGCGAACGACCGCAAGAGGGCACCACCGGTACCGAGGGCGGTGTGACG GAGAAAGCCAAGGCTCGCAAGGCCATGGAGGGCGAGACGGGTGAAAAAGTTCTTACCCAACCTAAGTCGCCCAAG GAGCAGCCTCCTCTACCGCACAGCGAAGAGCAGAAGCTACAGACGGACGACGGCAAGGACAAGGACGGCAAGGTC AAGTCAAAACAGTTGTCGGAAAAGGACAAGATTCGGTTGAAAGCATGGTCCGACAAGGATGAAGACAACACCGAT TACACGGGGCTTGATAAACCAGGCGATCTGCCAGAGGCCCCGCACGACAAGACCAACCCTCTCCCCAAATCGGCG GTCAAGGACCACCTCCAGACGTCCAAGTCTGCACCGGGTTCTTCGCAGACGGGGAGCAAGGACGGCCTCGACAAC GACGACGGCATCATCCGACCCTTCCACTCGTTCGTTCTCTCCTTGACCATGATTCTGGTGTCGGAAGTGGGCGAT AAGACCTTCCTCGTGGCGGCTCTCATGGCGATGAAGCACGATCGGCTGGTTGTCTTCTCGGCAGCCTTCGGGGCG CTCCTCGTCATGACTGTCCTATCTGCCGTGCTCGGGCACGCCGTGCCGACCCTGATACCGAAGCGTCTGACAAGC TTCCTGGCCGCCGGCCTGTTCCTCGTCTTCGGAATCAAGCTCCTGCGCGAGGGCATGAAGATGGATCCGGAAGAA GGAGTGTCGGCCGAGATGCACGAGGTCGAGCAGGAACTGGCGGAGAAGGAAAAGGAGCAGGGCCATCTCGGCCGC GGCTCCATCTCGGCACAGTCGCTGGAGATGGGGCTCAAGGGCAGGGCCTCGCGGTCCAAGGGCCGATTCCCATCA CCGGCTCGATCGCCGTCGCGATCTCCGTCCCGGAGCCCGTCGCGTGGATCCAGGTCGGCCGACAACTTCATACAC GGCATCAGCAACCTCTGCTCGTTGCTCCTGAGCCCGGCTTGGGTGCAGACGTTTGCCATGACGTTTCTGGGGGAA TGGGGCGACCGCAGCCAGATCGCGACGATTGCCATGGCTGCCGGTCAAGACTACTGGTGGGTGACTCTGGGAGCC ATGTGCGGCCACGCCGTGTGCACAGGCGTCGCCGTCGTCGGCGGCCGGGCCATTGCCGGGCGTGTCAGCCTCAAA GTCGTCACGGTCGGCGGTGCGATTGCGTTCCTGCTGTTCGCCTTCATCTACTTTGTCGAGGCTCTGCATGCGTAG |
| Transcript | >Hirsu2|8747 ATGAAGCTTCGCGCTCGGCGCTCAGCTCTCCCGCTGCTGCTCCTTCTGCCTTCGCTCGCCGCCACTGTCGCACCT GACAAGGTCGACGACGCCGTTGCCAGCGCTTCTGGGAACGTCAAAGCCCGGCATGACCGGCCCACCGAGGCCGCA CCCGTGGATGGAAAGGACGGCAAGCCTCACAGTGGCCCCTTCGTCGAGACCAAGCGCAGCGCGGCCGACTCGAAC CGCCCGGGGCTGCCTCGCCTCAAAGACCGGCCCGAGGACCCAACTGTGGTGGACGGCAAGAAGATACCGGAATGG AACGACAGCGTCATGTTCGACAAGAACCGCGAACGACCGCAAGAGGGCACCACCGGTACCGAGGGCGGTGTGACG GAGAAAGCCAAGGCTCGCAAGGCCATGGAGGGCGAGACGGGTGAAAAAGTTCTTACCCAACCTAAGTCGCCCAAG GAGCAGCCTCCTCTACCGCACAGCGAAGAGCAGAAGCTACAGACGGACGACGGCAAGGACAAGGACGGCAAGGTC AAGTCAAAACAGTTGTCGGAAAAGGACAAGATTCGGTTGAAAGCATGGTCCGACAAGGATGAAGACAACACCGAT TACACGGGGCTTGATAAACCAGGCGATCTGCCAGAGGCCCCGCACGACAAGACCAACCCTCTCCCCAAATCGGCG GTCAAGGACCACCTCCAGACGTCCAAGTCTGCACCGGGTTCTTCGCAGACGGGGAGCAAGGACGGCCTCGACAAC GACGACGGCATCATCCGACCCTTCCACTCGTTCGTTCTCTCCTTGACCATGATTCTGGTGTCGGAAGTGGGCGAT AAGACCTTCCTCGTGGCGGCTCTCATGGCGATGAAGCACGATCGGCTGGTTGTCTTCTCGGCAGCCTTCGGGGCG CTCCTCGTCATGACTGTCCTATCTGCCGTGCTCGGGCACGCCGTGCCGACCCTGATACCGAAGCGTCTGACAAGC TTCCTGGCCGCCGGCCTGTTCCTCGTCTTCGGAATCAAGCTCCTGCGCGAGGGCATGAAGATGGATCCGGAAGAA GGAGTGTCGGCCGAGATGCACGAGGTCGAGCAGGAACTGGCGGAGAAGGAAAAGGAGCAGGGCCATCTCGGCCGC GGCTCCATCTCGGCACAGTCGCTGGAGATGGGGCTCAAGGGCAGGGCCTCGCGGTCCAAGGGCCGATTCCCATCA CCGGCTCGATCGCCGTCGCGATCTCCGTCCCGGAGCCCGTCGCGTGGATCCAGGTCGGCCGACAACTTCATACAC GGCATCAGCAACCTCTGCTCGTTGCTCCTGAGCCCGGCTTGGGTGCAGACGTTTGCCATGACGTTTCTGGGGGAA TGGGGCGACCGCAGCCAGATCGCGACGATTGCCATGGCTGCCGGTCAAGACTACTGGTGGGTGACTCTGGGAGCC ATGTGCGGCCACGCCGTGTGCACAGGCGTCGCCGTCGTCGGCGGCCGGGCCATTGCCGGGCGTGTCAGCCTCAAA GTCGTCACGGTCGGCGGTGCGATTGCGTTCCTGCTGTTCGCCTTCATCTACTTTGTCGAGGCTCTGCATGCGTAG |
| Gene | >Hirsu2|8747 ATGAAGCTTCGCGCTCGGCGCTCAGCTCTCCCGCTGCTGCTCCTTCTGCCTTCGCTCGCCGCCACTGTCGCACCT GACAAGGTCGACGACGCCGTTGCCAGCGCTTCTGGGAACGTCAAAGCCCGGCATGACCGGCCCACCGAGGCCGCA CCCGTGGATGGAAAGGACGGCAAGCCTCACAGTGGCCCCTTCGTCGAGACCAAGCGCAGCGCGGCCGACTCGAAC CGCCCGGGGCTGCCTCGCCTCAAAGACCGGCCCGAGGACCCAACTGTGGTGGACGGCAAGAAGATACCGGAATGG AACGACAGCGTCATGTTCGACAAGAACCGCGAACGACCGCAAGAGGGCACCACCGGTACCGAGGGCGGTGTGACG GAGAAAGCCAAGGCTCGCAAGGCCATGGAGGGCGAGACGGGTGAAAAAGTTCTTACCCAACCTAAGTCGCCCAAG GAGCAGCCTCCTCTACCGCACAGCGAAGAGCAGAAGCTACAGACGGACGACGGCAAGGACAAGGACGGCAAGGTC AAGTCAAAACAGTTGTCGGAAAAGGACAAGATTCGGTTGAAAGCATGGTCCGACAAGGATGAAGACAACACCGAT TACACGGGGCTTGATGTAAGACACCCTCACCCCATCTTGATGGCGTGGCGGCCCAGGCACTTGGGTACGACTGAC GGGACCTATTGTACAGAAACCAGGCGATCTGCCAGAGGCCCCGCACGACAAGACCAACCCTCTCCCCAAATCGGC GGTCAAGGACCACCTCCAGACGTCCAAGTCTGCACCGGGTTCTTCGCAGACGGGGAGCAAGGACGGCCTCGACAA CGACGACGGCATCATCCGACCCTTCCACTCGTTCGTTCTCTCCTTGACCATGATTCTGGTGTCGGAAGTGGGCGA TAAGACCTTCCTCGTGGCGGCTCTCATGGCGATGAAGCACGATCGGCTGGTTGTCTTCTCGGCAGCCTTCGGGGC GCTCCTCGTCATGACTGTCCTATCTGCCGTGCTCGGGCACGCCGTGCCGACCCTGATACCGAAGCGTCTGACAAG CTTCCTGGCCGCCGGCCTGTTCCTCGTCTTCGGAATCAAGCTCCTGCGCGAGGGCATGAAGATGGATCCGGAAGA AGGAGTGTCGGCCGAGATGCACGAGGTCGAGCAGGAACTGGCGGAGAAGGAAAAGGAGCAGGGCCATCTCGGCCG CGGCTCCATCTCGGCACAGTCGCTGGAGATGGGGCTCAAGGGCAGGGCCTCGCGGTCCAAGGGCCGATTCCCATC ACCGGCTCGATCGCCGTCGCGATCTCCGTCCCGGAGCCCGTCGCGTGGATCCAGGTCGGCCGACAACTTCATACA CGGCATCAGCAACCTCTGCTCGTTGCTCCTGAGCCCGGCTTGGGTGCAGACGTTTGCCATGACGTTTCTGGGGGA ATGGGGCGACCGCAGCCAGATCGCGACGATTGCCATGGCTGCCGGTCAAGACTACTGGTGGGTGACTCTGGGAGC CATGTGCGGCCACGCCGTGTGCACAGGCGTCGCCGTCGTCGGCGGCCGGGCCATTGCCGGGCGTGTCAGCCTCAA AGTCGGTGAGTGGAAGGACGGGCTTGTGTGTTGGGGATCACGGAAAGCTAACCGGATGCTCAGTCACGGTCGGCG GTGCGATTGCGTTCCTGCTGTTCGCCTTCATCTACTTTGTCGAGGCTCTGCATGCGTAG |