Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|8745
Gene name
LocationContig_591:437..1323
Strand-
Gene length (bp)886
Transcript length (bp)657
Coding sequence length (bp)657
Protein length (aa) 219

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PFAM Domains

(None)

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|E4UPP6|LCPS_ARTGP Bifunctional lycopene cyclase/phytoene synthase OS=Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) GN=MGYG_02096 PE=3 SV=1 1 218 2.0E-69
sp|D4D802|LCPS_TRIVH Bifunctional lycopene cyclase/phytoene synthase OS=Trichophyton verrucosum (strain HKI 0517) GN=TRV_03236 PE=3 SV=1 1 218 4.0E-64
sp|Q2U4X9|LCPS_ASPOR Bifunctional lycopene cyclase/phytoene synthase OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=AO090020000159 PE=3 SV=1 1 218 1.0E-63
sp|B2WAQ3|LCPS_PYRTR Bifunctional lycopene cyclase/phytoene synthase OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=PTRG_07366 PE=3 SV=1 1 218 1.0E-62
sp|Q0V6M5|LCPS_PHANO Bifunctional lycopene cyclase/phytoene synthase OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SNOG_00339 PE=3 SV=1 1 218 1.0E-60
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Swissprot ID Swissprot Description Start End E-value
sp|E4UPP6|LCPS_ARTGP Bifunctional lycopene cyclase/phytoene synthase OS=Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) GN=MGYG_02096 PE=3 SV=1 1 218 2.0E-69
sp|D4D802|LCPS_TRIVH Bifunctional lycopene cyclase/phytoene synthase OS=Trichophyton verrucosum (strain HKI 0517) GN=TRV_03236 PE=3 SV=1 1 218 4.0E-64
sp|Q2U4X9|LCPS_ASPOR Bifunctional lycopene cyclase/phytoene synthase OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=AO090020000159 PE=3 SV=1 1 218 1.0E-63
sp|B2WAQ3|LCPS_PYRTR Bifunctional lycopene cyclase/phytoene synthase OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=PTRG_07366 PE=3 SV=1 1 218 1.0E-62
sp|Q0V6M5|LCPS_PHANO Bifunctional lycopene cyclase/phytoene synthase OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SNOG_00339 PE=3 SV=1 1 218 1.0E-60
sp|E4ZUB5|LCPS_LEPMJ Bifunctional lycopene cyclase/phytoene synthase OS=Leptosphaeria maculans (strain JN3 / isolate v23.1.3 / race Av1-4-5-6-7-8) GN=Lema_P114090.1 PE=3 SV=1 1 218 6.0E-59
sp|B2ATB0|LCPS_PODAN Bifunctional lycopene cyclase/phytoene synthase OS=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) GN=PODANS_1_15240 PE=3 SV=1 1 218 1.0E-58
sp|E3Q717|LCPS_COLGM Bifunctional lycopene cyclase/phytoene synthase OS=Colletotrichum graminicola (strain M1.001 / M2 / FGSC 10212) GN=GLRG_02475 PE=3 SV=1 1 218 1.0E-55
sp|D1Z4K7|LCPS_SORMK Bifunctional lycopene cyclase/phytoene synthase OS=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) GN=putative al2 PE=3 SV=1 4 218 2.0E-52
sp|P37295|LCPS_NEUCR Bifunctional lycopene cyclase/phytoene synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=al-2 PE=1 SV=1 4 218 9.0E-52
sp|A2QM49|LCPS_ASPNC Bifunctional lycopene cyclase/phytoene synthase OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An07g00800 PE=3 SV=1 9 214 2.0E-50
sp|Q8X0Z1|LCPS_GIBFU Bifunctional lycopene cyclase/phytoene synthase OS=Gibberella fujikuroi GN=carRA PE=2 SV=1 1 218 3.0E-49
sp|Q4P0S6|LCPS_USTMA Bifunctional lycopene cyclase/phytoene synthase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=UMAG_06287 PE=3 SV=1 3 209 5.0E-18
sp|E6ZZ11|LCPS_SPORE Bifunctional lycopene cyclase/phytoene synthase OS=Sporisorium reilianum (strain SRZ2) GN=sr13176 PE=3 SV=1 3 209 6.0E-18
sp|Q7Z859|LCPS_PHARH Bifunctional lycopene cyclase/phytoene synthase OS=Phaffia rhodozyma GN=crtYB PE=2 SV=1 2 218 1.0E-16
sp|Q9P854|LCPS_PHYB8 Bifunctional lycopene cyclase/phytoene synthase OS=Phycomyces blakesleeanus (strain ATCC 8743b / FGSC 10004 / NBRC 33097 / NRRL 1555) GN=carRA PE=1 SV=1 3 218 5.0E-15
sp|Q9HNE5|CRTY_HALSA Lycopene beta-cyclase OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=crtY PE=3 SV=2 30 199 3.0E-11
sp|B0R753|CRTY_HALS3 Lycopene beta-cyclase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=crtY PE=1 SV=1 30 199 3.0E-11
sp|Q9UUQ6|LCPS_MUCCL Bifunctional lycopene cyclase/phytoene synthase OS=Mucor circinelloides f. lusitanicus GN=CARRP PE=2 SV=1 1 206 3.0E-10
sp|Q67GH9|LCPS_BLATR Bifunctional lycopene cyclase/phytoene synthase OS=Blakeslea trispora GN=carRA PE=1 SV=1 3 201 1.0E-07
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.5

Transmembrane Domains

Domain # Start End Length
1 10 29 19
2 36 55 19
3 75 97 22
4 117 136 19
5 140 162 22
6 175 194 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|8745
MGLDYLFVHVFWTMPPALLMTAAYWPFLTRLEACKIAALIVIAVAASVPWDAHLVRRRIWSYPAGAVVGPTLFGI
PLEEVFFFVVQTYGTSLLYVILTKRLVLPAYLPTARRRRAWLPALWMLAAAAGLGLGLLALRAGGRWTYTGLILT
WACPVVLLELSVNGRFLQALPRTEIALAIGLPTLYLWLVDGLALRRGTWAIEHGTKLDLQIWGVLDVE*
Coding >Hirsu2|8745
ATGGGACTCGACTATCTCTTTGTCCATGTGTTCTGGACCATGCCGCCCGCCCTGCTGATGACGGCCGCCTACTGG
CCCTTTCTCACCAGGCTCGAGGCCTGCAAGATAGCGGCGCTGATCGTGATTGCCGTCGCCGCCTCGGTGCCGTGG
GACGCGCACCTCGTCCGCCGCCGCATCTGGTCCTACCCGGCCGGCGCCGTCGTCGGCCCCACGCTCTTCGGCATC
CCCCTCGAGGAGGTCTTCTTCTTCGTCGTCCAGACCTACGGCACCTCGCTCCTCTACGTCATCCTGACCAAGCGC
CTCGTCCTGCCGGCCTACTTGCCCACCGCCCGCCGCCGCCGCGCCTGGCTGCCGGCCCTGTGGATGCTGGCCGCC
GCCGCGGGGCTCGGCCTCGGCCTGCTGGCCCTCCGGGCCGGCGGCCGGTGGACCTACACGGGCCTGATCCTGACC
TGGGCCTGTCCGGTCGTGCTGCTTGAGCTGTCCGTGAACGGCCGCTTTCTCCAGGCCTTGCCGCGCACGGAAATC
GCGCTCGCCATCGGCCTGCCCACCCTCTACCTGTGGCTGGTGGACGGCCTCGCGCTGCGGCGCGGCACCTGGGCC
ATCGAGCACGGCACCAAGCTGGATCTCCAGATCTGGGGCGTCCTGGACGTCGAGTAA
Transcript >Hirsu2|8745
ATGGGACTCGACTATCTCTTTGTCCATGTGTTCTGGACCATGCCGCCCGCCCTGCTGATGACGGCCGCCTACTGG
CCCTTTCTCACCAGGCTCGAGGCCTGCAAGATAGCGGCGCTGATCGTGATTGCCGTCGCCGCCTCGGTGCCGTGG
GACGCGCACCTCGTCCGCCGCCGCATCTGGTCCTACCCGGCCGGCGCCGTCGTCGGCCCCACGCTCTTCGGCATC
CCCCTCGAGGAGGTCTTCTTCTTCGTCGTCCAGACCTACGGCACCTCGCTCCTCTACGTCATCCTGACCAAGCGC
CTCGTCCTGCCGGCCTACTTGCCCACCGCCCGCCGCCGCCGCGCCTGGCTGCCGGCCCTGTGGATGCTGGCCGCC
GCCGCGGGGCTCGGCCTCGGCCTGCTGGCCCTCCGGGCCGGCGGCCGGTGGACCTACACGGGCCTGATCCTGACC
TGGGCCTGTCCGGTCGTGCTGCTTGAGCTGTCCGTGAACGGCCGCTTTCTCCAGGCCTTGCCGCGCACGGAAATC
GCGCTCGCCATCGGCCTGCCCACCCTCTACCTGTGGCTGGTGGACGGCCTCGCGCTGCGGCGCGGCACCTGGGCC
ATCGAGCACGGCACCAAGCTGGATCTCCAGATCTGGGGCGTCCTGGACGTCGAGTAA
Gene >Hirsu2|8745
ATGGGACTCGACTATCTCTTTGTGTGGGTTGAGGCCCCTCGTGAAAGGCGTGCGGTCGAGGCGGAGTTGAGGGGA
ACAAGTCGAAGGGTGATGAGTGCTGAGACGTCATCTACAGCCATGTGTTCTGGACCATGCCGCCCGCCCTGCTGA
TGACGGCCGCCTACTGGCCCTTTCTCACCAGGCTCGAGGCCTGCAAGATAGCGGCGCTGATCGTGGTATGTCGAG
CCGATACCCAGGCTCGGCCGTCGCCGAGGGACTGAACAGCCGGCAACGCCAACAGATTGCCGTCGCCGCCTCGGT
GCCGTGGGACGCGCACCTCGTCCGCCGCCGCATCTGGTCCTACCCGGCCGGCGCCGTCGTCGGCCCCACGCTCTT
CGGCATCCCCCTCGAGGAGGTCTTCTTCTTCGTCGTCCAGACCTACGGCACCTCGCTCCTCTACGTCATCCTGAC
CAAGCGCCTCGTCCTGCCGGCCTACTTGCCCACCGCCCGCCGCCGCCGCGCCTGGCTGCCGGCCCTGTGGATGCT
GGCCGCCGCCGCGGGGCTCGGCCTCGGCCTGCTGGCCCTCCGGGCCGGCGGCCGGTGGACCTACACGGGCCTGAT
CCTGACCTGGGCCTGTCCGGTCGTGCTGCTTGAGCTGTGAGAGGAAGACGGAGCTCCCGTCCATATCCCCGCTGC
CCTTTCTCCTGGCTGACCATGGCCAACGACAAGGTCCGTGAACGGCCGCTTTCTCCAGGCCTTGCCGCGCACGGA
AATCGCGCTCGCCATCGGCCTGCCCACCCTCTACCTGTGGCTGGTGGACGGCCTCGCGCTGCGGCGCGGCACCTG
GGCCATCGAGCACGGCACCAAGCTGGATCTCCAGATCTGGGGCGTCCTGGACGTCGAGTAA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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