© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8735 |
| Gene name | |
| Location | Contig_59:39965..40949 |
| Strand | + |
| Gene length (bp) | 984 |
| Transcript length (bp) | 984 |
| Coding sequence length (bp) | 984 |
| Protein length (aa) | 328 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.2186 | 0.1263 | 0.7636 | 0.1919 | 0.1468 | 0.1301 | 0.5049 | 0.2365 | 0.2915 | 0.0047 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 16 | 0.99508 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 3 | 21 | 18 |
| Orthofinder run ID | 4 |
| Orthogroup | 10709 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|8735 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8735 MRVLVVLAALVPGILAAAALLDFLDLPLTNAEGELHGGVNPSLPYDQATLQEGLSAARSVGVPPKRYRALLRQYW LVRASDEAGISLRDWDPQRKPAQNRAVIFAVYDFYARLYLAHPELRWTAFANLAGSVFAAAMLDLGSLPFGGWYP SMLMSMQKHIFMDIGTMHVAYVSGGRAAIKEMREATLIDAETAAAWSDPASAVMRFSYREQNLVIAEQFDRFRAH VPWGRAITYGMAALGPMPVPGAKTPTEYRPALCGMLPDFNYADRDARWDYLSKEVVPAYLRLNASTVRQIVTKPL VERVAGYRGAHRLPEMIAQLENAGCGL* |
| Coding | >Hirsu2|8735 ATGCGCGTACTGGTCGTGTTGGCGGCGCTCGTGCCCGGCATCCTGGCTGCGGCGGCACTGCTGGATTTCCTCGAC CTGCCGTTGACCAACGCCGAGGGCGAGCTGCACGGCGGCGTCAACCCGTCGCTGCCGTACGACCAGGCCACTCTC CAGGAGGGGCTCTCCGCGGCCAGATCGGTAGGGGTGCCGCCGAAGCGATACCGGGCGCTGCTGCGGCAGTACTGG CTGGTGCGGGCGAGCGACGAGGCCGGCATCTCGTTGCGTGACTGGGATCCGCAACGCAAGCCGGCGCAGAACCGC GCCGTCATCTTCGCCGTCTACGACTTCTACGCGAGGCTCTACCTCGCCCATCCGGAGCTGCGCTGGACGGCCTTC GCCAACCTTGCGGGCTCGGTATTCGCCGCCGCCATGCTCGACCTCGGCTCCCTGCCGTTTGGCGGCTGGTACCCG TCGATGTTGATGTCGATGCAGAAGCACATCTTCATGGACATAGGCACGATGCACGTGGCCTATGTCAGCGGCGGC AGGGCGGCCATCAAGGAGATGCGCGAGGCGACCTTGATCGACGCCGAAACGGCGGCGGCGTGGTCCGATCCGGCG AGCGCAGTGATGCGCTTCTCGTACCGCGAGCAGAACCTGGTCATCGCCGAGCAGTTCGACCGCTTCCGCGCACAC GTGCCATGGGGGAGGGCCATCACGTACGGTATGGCAGCCTTGGGGCCGATGCCGGTGCCGGGCGCCAAGACGCCG ACCGAGTATAGGCCGGCGCTTTGCGGCATGCTGCCCGACTTCAACTACGCCGACCGAGATGCGCGCTGGGACTAT CTCAGCAAGGAGGTCGTGCCCGCTTACCTGCGCCTCAATGCGTCGACGGTGCGCCAGATTGTGACCAAGCCCTTG GTCGAGCGTGTCGCCGGGTACCGCGGCGCCCATCGCCTGCCGGAAATGATCGCTCAACTGGAGAATGCCGGTTGC GGGCTCTGA |
| Transcript | >Hirsu2|8735 ATGCGCGTACTGGTCGTGTTGGCGGCGCTCGTGCCCGGCATCCTGGCTGCGGCGGCACTGCTGGATTTCCTCGAC CTGCCGTTGACCAACGCCGAGGGCGAGCTGCACGGCGGCGTCAACCCGTCGCTGCCGTACGACCAGGCCACTCTC CAGGAGGGGCTCTCCGCGGCCAGATCGGTAGGGGTGCCGCCGAAGCGATACCGGGCGCTGCTGCGGCAGTACTGG CTGGTGCGGGCGAGCGACGAGGCCGGCATCTCGTTGCGTGACTGGGATCCGCAACGCAAGCCGGCGCAGAACCGC GCCGTCATCTTCGCCGTCTACGACTTCTACGCGAGGCTCTACCTCGCCCATCCGGAGCTGCGCTGGACGGCCTTC GCCAACCTTGCGGGCTCGGTATTCGCCGCCGCCATGCTCGACCTCGGCTCCCTGCCGTTTGGCGGCTGGTACCCG TCGATGTTGATGTCGATGCAGAAGCACATCTTCATGGACATAGGCACGATGCACGTGGCCTATGTCAGCGGCGGC AGGGCGGCCATCAAGGAGATGCGCGAGGCGACCTTGATCGACGCCGAAACGGCGGCGGCGTGGTCCGATCCGGCG AGCGCAGTGATGCGCTTCTCGTACCGCGAGCAGAACCTGGTCATCGCCGAGCAGTTCGACCGCTTCCGCGCACAC GTGCCATGGGGGAGGGCCATCACGTACGGTATGGCAGCCTTGGGGCCGATGCCGGTGCCGGGCGCCAAGACGCCG ACCGAGTATAGGCCGGCGCTTTGCGGCATGCTGCCCGACTTCAACTACGCCGACCGAGATGCGCGCTGGGACTAT CTCAGCAAGGAGGTCGTGCCCGCTTACCTGCGCCTCAATGCGTCGACGGTGCGCCAGATTGTGACCAAGCCCTTG GTCGAGCGTGTCGCCGGGTACCGCGGCGCCCATCGCCTGCCGGAAATGATCGCTCAACTGGAGAATGCCGGTTGC GGGCTCTGA |
| Gene | >Hirsu2|8735 ATGCGCGTACTGGTCGTGTTGGCGGCGCTCGTGCCCGGCATCCTGGCTGCGGCGGCACTGCTGGATTTCCTCGAC CTGCCGTTGACCAACGCCGAGGGCGAGCTGCACGGCGGCGTCAACCCGTCGCTGCCGTACGACCAGGCCACTCTC CAGGAGGGGCTCTCCGCGGCCAGATCGGTAGGGGTGCCGCCGAAGCGATACCGGGCGCTGCTGCGGCAGTACTGG CTGGTGCGGGCGAGCGACGAGGCCGGCATCTCGTTGCGTGACTGGGATCCGCAACGCAAGCCGGCGCAGAACCGC GCCGTCATCTTCGCCGTCTACGACTTCTACGCGAGGCTCTACCTCGCCCATCCGGAGCTGCGCTGGACGGCCTTC GCCAACCTTGCGGGCTCGGTATTCGCCGCCGCCATGCTCGACCTCGGCTCCCTGCCGTTTGGCGGCTGGTACCCG TCGATGTTGATGTCGATGCAGAAGCACATCTTCATGGACATAGGCACGATGCACGTGGCCTATGTCAGCGGCGGC AGGGCGGCCATCAAGGAGATGCGCGAGGCGACCTTGATCGACGCCGAAACGGCGGCGGCGTGGTCCGATCCGGCG AGCGCAGTGATGCGCTTCTCGTACCGCGAGCAGAACCTGGTCATCGCCGAGCAGTTCGACCGCTTCCGCGCACAC GTGCCATGGGGGAGGGCCATCACGTACGGTATGGCAGCCTTGGGGCCGATGCCGGTGCCGGGCGCCAAGACGCCG ACCGAGTATAGGCCGGCGCTTTGCGGCATGCTGCCCGACTTCAACTACGCCGACCGAGATGCGCGCTGGGACTAT CTCAGCAAGGAGGTCGTGCCCGCTTACCTGCGCCTCAATGCGTCGACGGTGCGCCAGATTGTGACCAAGCCCTTG GTCGAGCGTGTCGCCGGGTACCGCGGCGCCCATCGCCTGCCGGAAATGATCGCTCAACTGGAGAATGCCGGTTGC GGGCTCTGA |