© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|8717 |
| Gene name | |
| Location | Contig_588:12712..13423 |
| Strand | + |
| Gene length (bp) | 711 |
| Transcript length (bp) | 351 |
| Coding sequence length (bp) | 351 |
| Protein length (aa) | 117 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03669 | ASTER | PAT complex subunit Asterix | 1.8E-06 | 5 | 91 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12160|YP063_YEAST | Uncharacterized protein YPR063C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPR063C PE=1 SV=1 | 5 | 107 | 6.0E-11 |
| sp|Q09714|YA38_SCHPO | Uncharacterized protein C18B11.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18B11.08c PE=4 SV=2 | 1 | 95 | 2.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0045048 | protein insertion into ER membrane | Yes |
| GO:0044183 | protein folding chaperone | Yes |
| GO:0030176 | integral component of endoplasmic reticulum membrane | Yes |
| GO:0009987 | cellular process | No |
| GO:0051179 | localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0051668 | localization within membrane | No |
| GO:0031300 | intrinsic component of organelle membrane | No |
| GO:0051641 | cellular localization | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0090150 | establishment of protein localization to membrane | No |
| GO:0031227 | intrinsic component of endoplasmic reticulum membrane | No |
| GO:0031301 | integral component of organelle membrane | No |
| GO:0008104 | protein localization | No |
| GO:0033036 | macromolecule localization | No |
| GO:0016021 | integral component of membrane | No |
| GO:0072657 | protein localization to membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051205 | protein insertion into membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 63 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 76 | 95 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8717 MAPGKDMRRPDLIVPYQEPAGSGDKADFSSTLASTMPMAAMFTRNKFVGWAAVVVSIQNWLGESDEARKSSSTPG YFSILMSLMALGVTYMPMFLPPRAVPAGSGTEAAPPPVPPQ* |
| Coding | >Hirsu2|8717 ATGGCGCCCGGCAAGGACATGCGACGGCCCGACCTGATCGTCCCGTACCAGGAACCGGCCGGGTCGGGCGACAAG GCCGACTTCTCCTCCACGCTTGCGTCGACGATGCCCATGGCTGCCATGTTCACGCGTAACAAGTTTGTCGGGTGG GCCGCCGTCGTCGTTTCCATCCAGAACTGGCTCGGCGAGAGCGACGAGGCGAGGAAGAGCTCGAGCACGCCGGGC TACTTCTCCATTCTCATGTCACTCATGGCTCTGGGCGTCACCTACATGCCCATGTTCCTGCCGCCAAGGGCGGTC CCCGCTGGCTCAGGCACCGAGGCGGCGCCGCCGCCGGTTCCCCCGCAGTGA |
| Transcript | >Hirsu2|8717 ATGGCGCCCGGCAAGGACATGCGACGGCCCGACCTGATCGTCCCGTACCAGGAACCGGCCGGGTCGGGCGACAAG GCCGACTTCTCCTCCACGCTTGCGTCGACGATGCCCATGGCTGCCATGTTCACGCGTAACAAGTTTGTCGGGTGG GCCGCCGTCGTCGTTTCCATCCAGAACTGGCTCGGCGAGAGCGACGAGGCGAGGAAGAGCTCGAGCACGCCGGGC TACTTCTCCATTCTCATGTCACTCATGGCTCTGGGCGTCACCTACATGCCCATGTTCCTGCCGCCAAGGGCGGTC CCCGCTGGCTCAGGCACCGAGGCGGCGCCGCCGCCGGTTCCCCCGCAGTGA |
| Gene | >Hirsu2|8717 ATGGCGCCCGGCAAGGACATGCGACGGCCCGACCTGAGTGAGTCCCCTCTCCGCCCGCCCCCACCTTTCCGGTCT CTCGCGCGGCTGGCCGTGGCGCAAGGGGGGGGGAACAGAGCTTGACGAAGATGGAGAAGATGCGGCGACGGGGAG TCAATGCCATAAGAGGCCGAGCCATCTGTCCATCCATGCTGACGGTTGTCATGCGACTCTTCCCCGCACAGTCGT CCCGTACCAGGAACCGGCCGGGTCGGGCGACAAGGCCGACTTCTCCTCCACGCTTGCGTCGACGATGCCCATGGC TGCCATGTTCACGCGTAACAAGTTTGTCGGGTGGTAGGCGTGTTTCCTCCTCTCCCTCTCACGGATGGCGGGGGA CGATACGGGGGAGATGAGAGAGAGACAGATGAATGCCGGGGCTTGGGCTGACCACACGCGCGCCGGGACCCAGGG CCGCCGTCGTCGTTTCCATCCAGAACTGGCTCGGCGAGAGCGACGAGGCGAGGAAGAGCTCGAGCACGCCGGGCT ACTTCTCCATTCTCATGTCACGTACGGCTTCCTGACGGCTCCGGGCTCGGACGGTCTGCGGATTCGCTGATGGCG GTTGCAGTCATGGCTCTGGGCGTCACCTACATGCCCATGTTCCTGCCGCCAAGGGCGGTCCCCGCTGGCTCAGGC ACCGAGGCGGCGCCGCCGCCGGTTCCCCCGCAGTGA |