© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|8686 |
| Gene name | |
| Location | Contig_582:15361..15781 |
| Strand | + |
| Gene length (bp) | 420 |
| Transcript length (bp) | 300 |
| Coding sequence length (bp) | 300 |
| Protein length (aa) | 100 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 9.0E-18 | 16 | 73 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38279|YPQ3_YEAST | Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1 | 9 | 78 | 6.0E-23 |
| sp|Q10482|STM1_SCHPO | Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1 | 15 | 80 | 2.0E-11 |
| sp|Q12010|YPQ1_YEAST | Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1 | 30 | 78 | 7.0E-11 |
| sp|Q95XZ6|LAAT1_CAEEL | Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2 | 11 | 73 | 2.0E-08 |
| sp|Q06328|YPQ2_YEAST | Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1 | 15 | 72 | 4.0E-08 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 31 | 19 |
| 2 | 46 | 68 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|8686 MAPPTAAPLLDAEAVSGIFGSISIACWVVVFSPQIIQQFRQGNADGLSIQFIIIWLLGDVFNIVGAVLQGVLPTM VRLPFLPARRARGLSARRTKKQNI* |
| Coding | >Hirsu2|8686 ATGGCGCCTCCGACGGCGGCGCCGCTGCTCGACGCCGAGGCCGTCTCCGGCATCTTCGGATCCATCTCCATCGCC TGCTGGGTCGTCGTCTTCTCGCCGCAGATCATCCAGCAGTTCCGGCAGGGCAACGCCGACGGGCTATCGATCCAG TTCATCATCATCTGGCTGCTGGGCGACGTATTCAACATCGTCGGCGCCGTCCTGCAGGGCGTGCTGCCCACCATG GTACGCCTCCCCTTTCTCCCGGCTCGACGGGCGCGCGGGCTGAGCGCGCGGCGCACAAAAAAACAAAACATCTAG |
| Transcript | >Hirsu2|8686 ATGGCGCCTCCGACGGCGGCGCCGCTGCTCGACGCCGAGGCCGTCTCCGGCATCTTCGGATCCATCTCCATCGCC TGCTGGGTCGTCGTCTTCTCGCCGCAGATCATCCAGCAGTTCCGGCAGGGCAACGCCGACGGGCTATCGATCCAG TTCATCATCATCTGGCTGCTGGGCGACGTATTCAACATCGTCGGCGCCGTCCTGCAGGGCGTGCTGCCCACCATG GTACGCCTCCCCTTTCTCCCGGCTCGACGGGCGCGCGGGCTGAGCGCGCGGCGCACAAAAAAACAAAACATCTAG |
| Gene | >Hirsu2|8686 ATGGCGCCTCCGACGGCGGCGCCGCTGCTCGACGCCGAGGCCGTCTCCGGCATCTTCGGGTAAGAGGACCGCGCC TTTCGGGGGGGGGGGACGCGACGACGTCGGGACCTGACACGTTTGCTAGATCCATCTCCATCGCCTGCTGGGGTC CGTGCCGCTCTCTGCCTCTCGCCTCCGCTTCCCCGTGCTGACGCGGCCCCAGTCGTCGTCTTCTCGCCGCAGATC ATCCAGCAGTTCCGGCAGGGCAACGCCGACGGGCTATCGATCCAGTTCATCATCATCTGGCTGCTGGGCGACGTA TTCAACATCGTCGGCGCCGTCCTGCAGGGCGTGCTGCCCACCATGGTACGCCTCCCCTTTCTCCCGGCTCGACGG GCGCGCGGGCTGAGCGCGCGGCGCACAAAAAAACAAAACATCTAG |