Protein ID | Hirsu2|8661 |
Gene name | |
Location | Contig_58:19684..21331 |
Strand | - |
Gene length (bp) | 1647 |
Transcript length (bp) | 1422 |
Coding sequence length (bp) | 1422 |
Protein length (aa) | 474 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11915 | DUF3433 | Protein of unknown function (DUF3433) | 3.1E-22 | 48 | 135 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide|Transmembrane domain | 0.0732 | 0.1391 | 0.4118 | 0.5838 | 0.0755 | 0.0228 | 0.1722 | 0.46 | 0.1407 | 0.0114 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 2 | 24 | 22 |
2 | 44 | 66 | 22 |
3 | 116 | 138 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 39 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|8661 MSALTLVSFAISSLLLAAYIESLAQRSKAEGGLALSADRDMPRLPFIAYKYVPVVIVTLYSSVWAWVDQDIKRMQ PWFEMSRPQGSRAKDSLLLTYPHDFVVIVPWKAAKKRHWNVFLSSTMMVIILFILTPLQPTIMGLGSVTHRETVN ITERPDMNWRLHGAQDADVLPHAYAISWLGRPYPPFTTSKYALLPFQLDQESLKTTKKANFTAKTTKIWSDAACW PAEATSKDLHESRIAGLNNTKRAIKAGPQYISANRTEYLNLKFPADLFEFDIFDGTSCSSHVVTLLSREWPYDLQ SEIGSHDGWRYGSFEPDCKADLTAAWIKLMPQNPTSLNASQATLQVTIALCQLNYYQQQVVATVSAGGFRVYEDS VQPISEPLPLDDKKFAPVYFHHAIDSGMQKSLQDLERHGIARPGQLAPRQFEIRPTLGDPIKSLRHAKREIKYAL AGQNISLPELSDPAKLEGFTTLW* |
Coding | >Hirsu2|8661 ATGAGTGCTCTAACCCTCGTCTCCTTTGCTATCTCGTCACTTCTCCTAGCCGCATATATCGAGAGCCTGGCACAA CGCAGCAAAGCCGAAGGGGGACTTGCGCTCTCCGCTGATCGTGATATGCCTCGGCTGCCATTTATTGCATACAAA TACGTGCCCGTCGTTATCGTCACGCTCTATAGCTCGGTATGGGCCTGGGTAGACCAAGACATTAAGCGCATGCAG CCGTGGTTCGAAATGTCAAGGCCTCAAGGATCAAGGGCCAAGGACTCGCTCTTGCTCACCTATCCTCACGACTTC GTGGTCATCGTGCCATGGAAGGCAGCAAAGAAACGGCATTGGAATGTGTTCCTATCAAGCACCATGATGGTGATC ATCCTTTTCATCCTCACTCCACTTCAGCCGACCATCATGGGCCTTGGCTCCGTGACCCATCGAGAGACTGTGAAT ATCACGGAGAGACCTGATATGAATTGGCGTCTTCACGGGGCGCAGGATGCCGATGTCTTGCCACATGCATATGCC ATTTCATGGTTGGGACGACCATATCCGCCTTTCACTACCTCTAAATATGCCCTCCTTCCCTTTCAATTAGACCAG GAAAGCTTGAAGACGACTAAGAAAGCAAACTTTACTGCGAAAACGACTAAGATATGGTCCGATGCAGCCTGCTGG CCGGCAGAAGCGACGTCCAAGGATCTACATGAATCGCGGATCGCCGGGCTTAACAACACGAAGAGGGCGATAAAG GCCGGCCCTCAATATATCTCTGCAAATCGCACCGAATATTTGAATTTAAAGTTCCCCGCGGACCTTTTTGAATTT GACATCTTCGACGGCACGAGCTGCTCCTCTCACGTCGTTACTTTACTCAGCCGCGAATGGCCCTACGACTTGCAG TCGGAAATCGGAAGCCATGACGGATGGCGTTACGGCAGTTTTGAACCAGATTGTAAAGCTGACCTTACCGCGGCG TGGATCAAGCTTATGCCTCAAAATCCAACGTCGCTGAACGCTTCGCAAGCGACTCTTCAAGTCACGATCGCGCTC TGCCAACTCAATTATTATCAACAGCAGGTAGTGGCGACTGTCAGTGCCGGAGGCTTCAGGGTGTACGAAGATTCC GTTCAACCTATCTCCGAGCCTCTGCCATTAGACGATAAAAAGTTTGCACCGGTTTATTTCCATCATGCTATTGAT TCAGGAATGCAGAAGTCCCTCCAAGATCTTGAAAGGCATGGAATAGCGCGGCCCGGACAACTGGCCCCTCGTCAG TTCGAAATAAGGCCGACCCTTGGCGATCCTATCAAGTCCTTACGGCATGCAAAACGCGAGATCAAGTACGCTCTC GCTGGACAAAACATTTCTTTGCCCGAGTTATCCGATCCTGCAAAACTCGAAGGGTTCACTACTCTCTGGTAA |
Transcript | >Hirsu2|8661 ATGAGTGCTCTAACCCTCGTCTCCTTTGCTATCTCGTCACTTCTCCTAGCCGCATATATCGAGAGCCTGGCACAA CGCAGCAAAGCCGAAGGGGGACTTGCGCTCTCCGCTGATCGTGATATGCCTCGGCTGCCATTTATTGCATACAAA TACGTGCCCGTCGTTATCGTCACGCTCTATAGCTCGGTATGGGCCTGGGTAGACCAAGACATTAAGCGCATGCAG CCGTGGTTCGAAATGTCAAGGCCTCAAGGATCAAGGGCCAAGGACTCGCTCTTGCTCACCTATCCTCACGACTTC GTGGTCATCGTGCCATGGAAGGCAGCAAAGAAACGGCATTGGAATGTGTTCCTATCAAGCACCATGATGGTGATC ATCCTTTTCATCCTCACTCCACTTCAGCCGACCATCATGGGCCTTGGCTCCGTGACCCATCGAGAGACTGTGAAT ATCACGGAGAGACCTGATATGAATTGGCGTCTTCACGGGGCGCAGGATGCCGATGTCTTGCCACATGCATATGCC ATTTCATGGTTGGGACGACCATATCCGCCTTTCACTACCTCTAAATATGCCCTCCTTCCCTTTCAATTAGACCAG GAAAGCTTGAAGACGACTAAGAAAGCAAACTTTACTGCGAAAACGACTAAGATATGGTCCGATGCAGCCTGCTGG CCGGCAGAAGCGACGTCCAAGGATCTACATGAATCGCGGATCGCCGGGCTTAACAACACGAAGAGGGCGATAAAG GCCGGCCCTCAATATATCTCTGCAAATCGCACCGAATATTTGAATTTAAAGTTCCCCGCGGACCTTTTTGAATTT GACATCTTCGACGGCACGAGCTGCTCCTCTCACGTCGTTACTTTACTCAGCCGCGAATGGCCCTACGACTTGCAG TCGGAAATCGGAAGCCATGACGGATGGCGTTACGGCAGTTTTGAACCAGATTGTAAAGCTGACCTTACCGCGGCG TGGATCAAGCTTATGCCTCAAAATCCAACGTCGCTGAACGCTTCGCAAGCGACTCTTCAAGTCACGATCGCGCTC TGCCAACTCAATTATTATCAACAGCAGGTAGTGGCGACTGTCAGTGCCGGAGGCTTCAGGGTGTACGAAGATTCC GTTCAACCTATCTCCGAGCCTCTGCCATTAGACGATAAAAAGTTTGCACCGGTTTATTTCCATCATGCTATTGAT TCAGGAATGCAGAAGTCCCTCCAAGATCTTGAAAGGCATGGAATAGCGCGGCCCGGACAACTGGCCCCTCGTCAG TTCGAAATAAGGCCGACCCTTGGCGATCCTATCAAGTCCTTACGGCATGCAAAACGCGAGATCAAGTACGCTCTC GCTGGACAAAACATTTCTTTGCCCGAGTTATCCGATCCTGCAAAACTCGAAGGGTTCACTACTCTCTGGTAA |
Gene | >Hirsu2|8661 ATGAGTGCTCTAACCCTCGTCTCCTTTGCTATCTCGTCACTTCTCCTAGCCGCATATATCGAGAGCCTGGCACAA CGCAGCAAAGCCGAAGGGGGACTTGCGCTCTCCGCTGATCGTGATATGCCTCGGCTGCCATTTATTGCATACAAA TACGTGCCCGTCGTTATCGTCACGCTCTATAGCTCGGTATGGGCCTGGGTAGACCAAGACATTAAGCGCATGCAG CCGTGGTTCGAAATGTCAAGGCCTCAAGGATCAAGGGCCAAGGACTCGCTCTTGCTCACCTATCCTCACGACTTC GTGGTCATCGTGCCATGGAAGGCAGCAAAGAAACGGTATGCTCACACTTTGGGTTTTCTTCTCGCATTCGTTGCA TTTGTGTGTCGTGAACTCCGTGTTGCTTTGCGCGTTGTTGCGAGCTTAATGCTGGGCGCTTGGCCTCATACTCCG GACTCTTGATTTCTTTAAGCAACAGACTTGAGTATTATGTTAGCCAAATTCCGGCTAACTCTAGAAACAGGCATT GGAATGTGTTCCTATCAAGCACCATGATGGTGATCATCCTTTTCATCCTCACTCCACTTCAGCCGACCATCATGG GCCTTGGCTCCGTGACCCATCGAGAGACTGTGAATATCACGGAGAGACCTGATATGAATTGGCGTCTTCACGGGG CGCAGGATGCCGATGTCTTGCCACATGCATATGCCATTTCATGGTTGGGACGACCATATCCGCCTTTCACTACCT CTAAATATGCCCTCCTTCCCTTTCAATTAGACCAGGAAAGCTTGAAGACGACTAAGAAAGCAAACTTTACTGCGA AAACGACTAAGATATGGTCCGATGCAGCCTGCTGGCCGGCAGAAGCGACGTCCAAGGATCTACATGAATCGCGGA TCGCCGGGCTTAACAACACGAAGAGGGCGATAAAGGCCGGCCCTCAATATATCTCTGCAAATCGCACCGAATATT TGAATTTAAAGTTCCCCGCGGACCTTTTTGAATTTGACATCTTCGACGGCACGAGCTGCTCCTCTCACGTCGTTA CTTTACTCAGCCGCGAATGGCCCTACGACTTGCAGTCGGAAATCGGAAGCCATGACGGATGGCGTTACGGCAGTT TTGAACCAGATTGTAAAGCTGACCTTACCGCGGCGTGGATCAAGCTTATGCCTCAAAATCCAACGTCGCTGAACG CTTCGCAAGCGACTCTTCAAGTCACGATCGCGCTCTGCCAACTCAATTATTATCAACAGCAGGTAGTGGCGACTG TCAGTGCCGGAGGCTTCAGGGTGTACGAAGATTCCGTTCAACCTATCTCCGAGCCTCTGCCATTAGACGATAAAA AGTTTGCACCGGTTTATTTCCATCATGCTATTGATTCAGGAATGCAGAAGTCCCTCCAAGATCTTGAAAGGCATG GAATAGCGCGGCCCGGACAACTGGCCCCTCGTCAGTTCGAAATAAGGCCGACCCTTGGCGATCCTATCAAGTCCT TACGGCATGCAAAACGCGAGATCAAGTACGCTCTCGCTGGACAAAACATTTCTTTGCCCGAGTTATCCGATCCTG CAAAACTCGAAGGTGAAATAGATCGAATCTATAAACATCTATTCTCTATCAGGGTTCACTACTCTCTGGTAA |