Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|8625
Gene name
LocationContig_576:2891..3548
Strand+
Gene length (bp)657
Transcript length (bp)522
Coding sequence length (bp)522
Protein length (aa) 174

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03694 Erg28 Erg28 like protein 6.6E-45 13 154

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P40030|ERG28_YEAST Ergosterol biosynthetic protein 28 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG28 PE=1 SV=1 12 168 2.0E-21
sp|Q9ERY9|ERG28_MOUSE Probable ergosterol biosynthetic protein 28 OS=Mus musculus GN=ORF11 PE=2 SV=1 13 171 2.0E-13
sp|Q5R589|ERG28_PONAB Probable ergosterol biosynthetic protein 28 OS=Pongo abelii PE=2 SV=1 13 170 4.0E-13
sp|Q9UKR5|ERG28_HUMAN Probable ergosterol biosynthetic protein 28 OS=Homo sapiens GN=C14orf1 PE=1 SV=1 13 170 4.0E-13
sp|O74820|ERG28_SCHPO Ergosterol biosynthetic protein 28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg28 PE=3 SV=1 1 144 2.0E-10
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Swissprot ID Swissprot Description Start End E-value
sp|P40030|ERG28_YEAST Ergosterol biosynthetic protein 28 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG28 PE=1 SV=1 12 168 2.0E-21
sp|Q9ERY9|ERG28_MOUSE Probable ergosterol biosynthetic protein 28 OS=Mus musculus GN=ORF11 PE=2 SV=1 13 171 2.0E-13
sp|Q5R589|ERG28_PONAB Probable ergosterol biosynthetic protein 28 OS=Pongo abelii PE=2 SV=1 13 170 4.0E-13
sp|Q9UKR5|ERG28_HUMAN Probable ergosterol biosynthetic protein 28 OS=Homo sapiens GN=C14orf1 PE=1 SV=1 13 170 4.0E-13
sp|O74820|ERG28_SCHPO Ergosterol biosynthetic protein 28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg28 PE=3 SV=1 1 144 2.0E-10
sp|O80594|ERG28_ARATH Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana GN=At1g10030 PE=2 SV=2 49 163 5.0E-09
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0044425 membrane part No
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 31 0.5

Transmembrane Domains

Domain # Start End Length
1 15 37 22
2 92 114 22
3 119 138 19
4 145 164 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|8625
MDVIKSLLPPAKGVLPYYMLILSVLSIGNSLQAYATLHFSRRVYNGRFVRNPRLPPASAGFDPDDAVDRLVPAAR
PTDPGAADQVTPLAGRLFGTWTLITCVVRCYAAYHLHLAPMYDVAIWTYVVALGHFASELFVFRSMSLGLPQIFP
FTLAGCALIWMPLVRDHYVDGGR*
Coding >Hirsu2|8625
ATGGACGTGATCAAGTCGCTGCTCCCGCCGGCCAAGGGCGTGCTGCCCTACTACATGCTCATTCTCTCCGTCCTC
TCGATCGGCAACTCGCTGCAGGCGTACGCGACGCTGCACTTCTCGCGCCGCGTCTACAACGGCCGCTTCGTGCGC
AACCCGCGGCTGCCGCCCGCGTCGGCCGGCTTCGACCCGGACGACGCCGTCGACAGGCTCGTGCCGGCCGCGCGG
CCGACGGACCCCGGCGCGGCCGACCAGGTGACGCCCCTGGCCGGCCGCCTCTTCGGCACCTGGACCCTCATAACC
TGCGTCGTCCGCTGCTACGCCGCCTACCACCTGCACCTGGCGCCCATGTACGACGTCGCCATCTGGACCTACGTC
GTCGCGCTCGGCCACTTCGCCTCCGAGCTCTTCGTCTTCCGCAGCATGAGCTTGGGCCTGCCGCAGATCTTCCCC
TTCACCCTGGCCGGCTGCGCCCTGATCTGGATGCCGCTGGTGCGCGACCACTACGTCGACGGCGGCCGCTGA
Transcript >Hirsu2|8625
ATGGACGTGATCAAGTCGCTGCTCCCGCCGGCCAAGGGCGTGCTGCCCTACTACATGCTCATTCTCTCCGTCCTC
TCGATCGGCAACTCGCTGCAGGCGTACGCGACGCTGCACTTCTCGCGCCGCGTCTACAACGGCCGCTTCGTGCGC
AACCCGCGGCTGCCGCCCGCGTCGGCCGGCTTCGACCCGGACGACGCCGTCGACAGGCTCGTGCCGGCCGCGCGG
CCGACGGACCCCGGCGCGGCCGACCAGGTGACGCCCCTGGCCGGCCGCCTCTTCGGCACCTGGACCCTCATAACC
TGCGTCGTCCGCTGCTACGCCGCCTACCACCTGCACCTGGCGCCCATGTACGACGTCGCCATCTGGACCTACGTC
GTCGCGCTCGGCCACTTCGCCTCCGAGCTCTTCGTCTTCCGCAGCATGAGCTTGGGCCTGCCGCAGATCTTCCCC
TTCACCCTGGCCGGCTGCGCCCTGATCTGGATGCCGCTGGTGCGCGACCACTACGTCGACGGCGGCCGCTGA
Gene >Hirsu2|8625
ATGGACGTGATCAAGTCGCTGCTCCCGCCGGCCAAGGGCGTGCTGCCCTACTACATGCTCATTGTACGGTCCCGG
CCCAGCTCCCGCCCGTCGAGTCGTCAAATTTCTGCTTCATTCTTTTTCCTTCTCGTCGACGGAATGAAGAACTGA
ACGACTGACCGTCGCGTCTCTCTGCCTCCTCCCGCGCGGTGGCGGCAGCTCTCCGTCCTCTCGATCGGCAACTCG
CTGCAGGCGTACGCGACGCTGCACTTCTCGCGCCGCGTCTACAACGGCCGCTTCGTGCGCAACCCGCGGCTGCCG
CCCGCGTCGGCCGGCTTCGACCCGGACGACGCCGTCGACAGGCTCGTGCCGGCCGCGCGGCCGACGGACCCCGGC
GCGGCCGACCAGGTGACGCCCCTGGCCGGCCGCCTCTTCGGCACCTGGACCCTCATAACCTGCGTCGTCCGCTGC
TACGCCGCCTACCACCTGCACCTGGCGCCCATGTACGACGTCGCCATCTGGACCTACGTCGTCGCGCTCGGCCAC
TTCGCCTCCGAGCTCTTCGTCTTCCGCAGCATGAGCTTGGGCCTGCCGCAGATCTTCCCCTTCACCCTGGCCGGC
TGCGCCCTGATCTGGATGCCGCTGGTGCGCGACCACTACGTCGACGGCGGCCGCTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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